Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_23848_v3 Cicer arietinum L. HOM05D004961 ORTHO05D006258 0.0e+00 1238.4 642 100.0
Medtr8g036115 Medicago truncatula HOM05D004961 ORTHO05D006258 0.0e+00 1103.6 654 85.0
TPR.G21740 Trifolium pratense HOM05D004961 ORTHO05D006258 0.0e+00 1094.7 561 93.6
Psat4g195520 Pisum sativum HOM05D004961 ORTHO05D006258 1.2e-304 1049.3 535 95.0
Lj3g0023798 Lotus japonicus HOM05D004961 ORTHO05D006258 1.6e-291 1005.7 640 80.9
Lalb_Chr13g0291711 Lupinus albus HOM05D004961 ORTHO05D006258 1.7e-285 985.7 644 77.2
Haze_16810 Corylus avellana HOM05D004961 ORTHO05D006258 8.5e-282 973.4 598 79.4
Cfa001712 Carpinus fangiana HOM05D004961 ORTHO05D006258 1.1e-281 973.0 598 79.6
QL08p052244 Quercus lobata HOM05D004961 ORTHO05D006258 3.5e-275 951.4 603 79.3
Thecc.01G375500 Theobroma cacao HOM05D004961 ORTHO05D006258 1.1e-273 946.4 616 75.8
arahy.Tifrunner.gnm1.ann1.0VBM10 Arachis hypogaea HOM05D004961 ORTHO05D006258 3.4e-270 934.9 649 76.3
arahy.Tifrunner.gnm1.ann1.T4E2VP Arachis hypogaea HOM05D004961 ORTHO05D006258 9.8e-270 933.3 566 81.3
Prupe.2G146400 Prunus persica HOM05D004961 ORTHO05D006258 6.3e-269 930.6 560 79.5
CiPaw.02G167000 Carya illinoinensis HOM05D004961 ORTHO05D006258 9.2e-268 926.8 603 77.6
Glyma.01G143700 Glycine max HOM05D004961 ORTHO05D006258 5.9e-267 924.1 660 73.0
CANSAT56G2246 Cannabis sativa HOM05D004961 ORTHO05D006258 7.7e-267 923.7 657 70.6
Gohir.A11G081100 Gossypium hirsutum HOM05D004961 ORTHO05D006258 1.0e-266 923.3 615 74.5
COL.COLO4_12554 Corchorus olitorius HOM05D004961 ORTHO05D006258 1.7e-266 922.5 563 78.9
CSS0024555 Camellia sinensis var. sinensis HOM05D004961 ORTHO05D006258 5.0e-266 921.0 557 78.1
RcHm_v2.0_Chr1g0350691 Rosa chinensis HOM05D004961 ORTHO05D006258 1.9e-265 919.1 560 78.4
Gorai.007G091500 Gossypium raimondii HOM05D004961 ORTHO05D006258 2.5e-265 918.7 615 74.3
Phvul.010G084800 Phaseolus vulgaris HOM05D004961 ORTHO05D006258 4.3e-265 917.9 651 74.2
CiPaw.01G261500 Carya illinoinensis HOM05D004961 ORTHO05D006258 5.6e-265 917.5 612 74.2
Duzib133G1444 Durio zibethinus HOM05D004961 ORTHO05D006258 9.5e-265 916.8 620 73.2
Gohir.D11G085600 Gossypium hirsutum HOM05D004961 ORTHO05D006258 9.5e-265 916.8 615 74.1
Glyma.03G023401 Glycine max HOM05D004961 ORTHO05D006258 2.8e-264 915.2 658 72.8
VMungo0331G0268 Vigna mungo HOM05D004961 ORTHO05D006258 1.0e-263 913.3 654 74.0
MD02G1203100 Malus domestica HOM05D004961 ORTHO05D006258 4.0e-263 911.4 609 76.0
MD07G1123000 Malus domestica HOM05D004961 ORTHO05D006258 4.4e-262 907.9 599 74.8
FvH4_7g11970 Fragaria vesca HOM05D004961 ORTHO05D006258 1.7e-261 906.0 598 74.4
FAN10G1405 Fragaria x ananassa HOM05D004961 ORTHO05D006258 1.7e-261 906.0 598 74.4
Manes.05G044700 Manihot esculenta HOM05D004961 ORTHO05D006258 3.7e-261 904.8 604 73.8
FAN06G1099 Fragaria x ananassa HOM05D004961 ORTHO05D006258 4.9e-261 904.4 598 74.2
FAN06G1287 Fragaria x ananassa HOM05D004961 ORTHO05D006258 8.3e-261 903.7 598 74.2
MELO3C006184.2 Cucumis melo HOM05D004961 ORTHO05D006258 1.1e-260 903.3 653 68.5
CsaV3_3G009640 Cucumis sativus L. HOM05D004961 ORTHO05D006258 1.1e-260 903.3 653 68.5
FAN01G0106 Fragaria x ananassa HOM05D004961 ORTHO05D006258 1.1e-260 903.3 647 69.9
FAN03G2819 Fragaria x ananassa HOM05D004961 ORTHO05D006258 1.1e-260 903.3 598 74.2
PGR031G0429 Punica granatum HOM05D004961 ORTHO05D006258 1.4e-260 902.9 557 76.8
Gorai.004G041000 Gossypium raimondii HOM05D004961 ORTHO05D006258 7.0e-260 900.6 602 72.9
Gohir.A08G031300 Gossypium hirsutum HOM05D004961 ORTHO05D006258 1.2e-259 899.8 604 73.2
FAN10G1351 Fragaria x ananassa HOM05D004961 ORTHO05D006258 1.6e-259 899.4 598 74.1
Gohir.D08G042400 Gossypium hirsutum HOM05D004961 ORTHO05D006258 1.6e-259 899.4 602 72.9
Potri.014G070200 Populus trichocarpa HOM05D004961 ORTHO05D006258 1.3e-258 896.3 607 73.3
Sed0003746 Sechium edule HOM05D004961 ORTHO05D006258 3.0e-258 895.2 610 71.1
TWI14G0737 Tripterygium wilfordii HOM05D004961 ORTHO05D006258 8.6e-258 893.6 616 71.8
vmacro13395 Vaccinium macrocarpon HOM05D004961 ORTHO05D006258 4.3e-257 891.3 609 72.1
TWI59G0003 Tripterygium wilfordii HOM05D004961 ORTHO05D006258 1.2e-256 889.8 618 71.8
Sabra14G0049800 Salix brachista HOM05D004961 ORTHO05D006258 2.8e-256 888.6 607 71.8
Ciclev10019247m.g Citrus clementina HOM05D004961 ORTHO05D006258 3.6e-256 888.3 608 73.7
Rhsim07G0027200 Rhododendron simsii HOM05D004961 ORTHO05D006258 6.2e-256 887.5 615 70.6
Thhalv10005830m.g Eutrema salsugineum HOM05D004961 ORTHO05D006258 2.3e-255 885.6 617 71.0
TAR629G2710 Trochodendron aralioides HOM05D004961 ORTHO05D006258 2.6e-254 882.1 617 70.7
Lalb_Chr07g0189751 Lupinus albus HOM05D004961 ORTHO05D006258 9.8e-254 880.2 602 74.6
Sp5g02400 Schrenkiella parvula HOM05D004961 ORTHO05D006258 1.1e-252 876.7 664 68.8
Dinv43717 Davidia involucrata HOM05D004961 ORTHO05D006258 1.9e-252 875.9 541 77.1
Atru.chr5.317 Acer truncatum HOM05D004961 ORTHO05D006258 2.7e-251 872.1 559 76.6
Aa31LG10G15080 Aethionema arabicum HOM05D004961 ORTHO05D006258 2.7e-251 872.1 617 71.2
Lj9P570T30 Lonicera japonica HOM05D004961 ORTHO05D006258 6.0e-251 870.9 535 77.0
CSS0035955 Camellia sinensis var. sinensis HOM05D004961 ORTHO05D006258 1.3e-250 869.8 579 73.7
SalBow5G3969 Salvia bowleyana HOM05D004961 ORTHO05D006258 4.3e-249 864.8 611 69.2
SalBow5G5559 Salvia bowleyana HOM05D004961 ORTHO05D006258 4.3e-249 864.8 611 69.2
CARHR171240 Cardamine hirsuta HOM05D004961 ORTHO05D006258 1.2e-248 863.2 618 70.1
Hma1.2p1_0033F.1_g021010 Hydrangea macrophylla HOM05D004961 ORTHO05D006258 4.0e-247 858.2 558 72.8
Hma1.2p1_2294F.1_g319110 Hydrangea macrophylla HOM05D004961 ORTHO05D006258 6.8e-247 857.4 558 72.8
Cc02_g36640 Coffea canephora HOM05D004961 ORTHO05D006258 1.3e-245 853.2 557 72.9
THA.LOC104802441 Tarenaya hassleriana HOM05D004961 ORTHO05D006258 4.9e-245 851.3 614 69.1
Aqoxy7G00605 Aquilegia oxysepala HOM05D004961 ORTHO05D006258 1.9e-244 849.4 560 72.7
AL5G43170 Arabidopsis lyrata HOM05D004961 ORTHO05D006258 2.4e-244 849.0 616 69.5
Actinidia12261 Actinidia chinensis HOM05D004961 ORTHO05D006258 2.1e-243 845.9 535 76.3
Sed0025415 Sechium edule HOM05D004961 ORTHO05D006258 2.1e-243 845.9 568 72.2
TAR375G0417 Trochodendron aralioides HOM05D004961 ORTHO05D006258 1.0e-242 843.6 560 73.0
Nn4g26417 Nelumbo nucifera HOM05D004961 ORTHO05D006258 1.3e-242 843.2 560 72.7
Carub.0005s2761 Capsella rubella HOM05D004961 ORTHO05D006258 1.5e-241 839.7 628 67.4
AT3G60850 Arabidopsis thaliana HOM05D004961 ORTHO05D006258 1.8e-239 832.8 617 68.9
Nitab4.5_0000457g0390 Nicotiana tabacum HOM05D004961 ORTHO05D006258 4.9e-237 824.7 558 70.6
BcaC07g42645 Brassica carinata HOM05D004961 ORTHO05D006258 9.2e-236 820.5 622 68.2
Nitab4.5_0005372g0040 Nicotiana tabacum HOM05D004961 ORTHO05D006258 9.2e-236 820.5 558 70.4
MBI12_g27776_MAGBIO Magnolia biondii HOM05D004961 ORTHO05D006258 1.7e-234 816.2 613 66.7
BraA09t40736Z Brassica rapa HOM05D004961 ORTHO05D006258 2.3e-234 815.8 618 68.3
A09p53100 Brassica napus HOM05D004961 ORTHO05D006258 5.1e-234 814.7 618 68.1
Sopen01g037160 Solanum pennellii HOM05D004961 ORTHO05D006258 2.5e-233 812.4 556 70.3
Solyc01g091390.2 Solanum lycopersicum HOM05D004961 ORTHO05D006258 3.3e-233 812.0 556 70.5
CAN.G388.8 Capsicum annuum HOM05D004961 ORTHO05D006258 4.3e-233 811.6 556 69.6
PGSC0003DMG400012758 Solanum tuberosum HOM05D004961 ORTHO05D006258 2.1e-232 809.3 556 70.5
PSO478G4809 Papaver somniferum HOM05D004961 ORTHO05D006258 2.8e-232 808.9 568 68.5
BcaC07g40605 Brassica carinata HOM05D004961 ORTHO05D006258 8.1e-232 807.4 621 67.5
C08p35800 Brassica napus HOM05D004961 ORTHO05D006258 8.1e-232 807.4 621 67.5
BolC8t51170H Brassica oleracea HOM05D004961 ORTHO05D006258 8.1e-232 807.4 621 67.5
EL10Ac1g00903 Beta vulgaris HOM05D004961 ORTHO05D006258 1.4e-231 806.6 550 71.1
AUR62004223 Chenopodium quinoa HOM05D004961 ORTHO05D006258 1.8e-231 806.2 557 70.2
Migut.B01640 Erythranthe guttata HOM05D004961 ORTHO05D006258 2.0e-230 802.7 632 63.0
Ah.05g174990 Amaranthus hybridus HOM05D004961 ORTHO05D006258 2.1e-227 792.7 601 66.4
PSO782G4206 Papaver somniferum HOM05D004961 ORTHO05D006258 1.3e-226 790.0 568 67.4
Migut.N01639 Erythranthe guttata HOM05D004961 ORTHO05D006258 2.1e-224 782.7 563 67.5
SHI25769 Sapria himalayana HOM05D004961 ORTHO05D006258 8.1e-224 780.8 590 65.8
ECA236G4958 Erigeron canadensis HOM05D004961 ORTHO05D006258 3.1e-223 778.9 559 68.2
DCAR_025114 Daucus carota HOM05D004961 ORTHO05D006258 2.2e-221 772.7 599 65.1
AUR62013625 Chenopodium quinoa HOM05D004961 ORTHO05D006258 6.0e-219 764.6 530 70.4
Peaxi162Scf00021g01613 Petunia axillaris HOM05D004961 ORTHO05D006258 3.9e-218 761.9 504 73.4
BcaC08g45088 Brassica carinata HOM05D004961 ORTHO05D006258 1.6e-216 756.5 607 65.7
C06p26950 Brassica napus HOM05D004961 ORTHO05D006258 1.6e-216 756.5 607 65.7
BolC6t37869H Brassica oleracea HOM05D004961 ORTHO05D006258 1.6e-216 756.5 607 65.7
ATR0810G227 Amborella trichopoda HOM05D004961 ORTHO05D006258 1.4e-215 753.4 604 61.9
Nn4g26286 Nelumbo nucifera HOM05D004961 ORTHO05D006258 1.8e-215 753.1 531 70.4
Sc26g0001210 Simmondsia chinensis HOM05D004961 ORTHO05D006258 2.4e-215 752.7 554 66.4
SGA_v2.0_scaffold11G05589 Striga asiatica HOM05D004961 ORTHO05D006258 2.0e-214 749.6 683 58.0
A07p25240 Brassica napus HOM05D004961 ORTHO05D006258 5.1e-210 734.9 664 61.4
ECA234G3702 Erigeron canadensis HOM05D004961 ORTHO05D006258 8.7e-210 734.2 594 61.6
HanXRQChr09g0245711 Helianthus annuus HOM05D004961 ORTHO05D006258 1.9e-209 733.0 559 65.8
HanXRQChr03g0093851 Helianthus annuus HOM05D004961 ORTHO05D006258 6.2e-208 728.0 558 65.1
HanXRQChr06g0169541 Helianthus annuus HOM05D004961 ORTHO05D006258 1.5e-206 723.4 536 67.5
BraA07t30166Z Brassica rapa HOM05D004961 ORTHO05D006258 5.8e-206 721.5 611 64.3
Lsat_1_v5_gn_7_7241 Lactuca sativa HOM05D004961 ORTHO05D006258 3.2e-204 715.7 551 68.2
Oeu005782.1 Olea europaea HOM05D004961 ORTHO05D006258 3.5e-203 712.2 562 64.1
CDE02G2832 Ceratophyllum demersum HOM05D004961 ORTHO05D006258 6.9e-199 698.0 591 61.1
Oeu037913.2 Olea europaea HOM05D004961 ORTHO05D006258 1.9e-196 689.9 563 62.2
HPP92_025672 Vanilla planifolia HOM05D004961 ORTHO05D006258 2.7e-187 659.4 578 60.4
SEGI_19190 Sequoiadendron giganteum HOM05D004961 ORTHO05D006258 6.9e-183 644.8 587 56.9
HanXRQChr16g0519241 Helianthus annuus HOM05D004961 ORTHO05D006258 5.2e-178 628.6 558 58.8
unitig_8.g3388 Utricularia gibba HOM05D004961 ORTHO05D006258 7.7e-174 614.8 436 67.9
Os03g0247100 Oryza sativa ssp. japonica HOM05D004961 ORTHO05D006258 1.2e-171 607.4 590 55.3
Oeu003482.1 Olea europaea HOM05D004961 ORTHO05D006258 1.6e-171 607.1 563 54.7
CDE11G0257 Ceratophyllum demersum HOM05D004961 ORTHO05D006258 1.0e-165 587.8 484 62.0
GSVIVG01027619001 Vitis vinifera HOM05D004961 ORTHO05D006258 8.8e-162 574.7 415 70.4
Zm00001eb398630 Zea mays HOM05D004961 ORTHO05D006258 2.1e-155 553.5 560 54.1
Eucgr.D02450 Eucalyptus grandis HOM05D004961 ORTHO05D006258 3.3e-148 529.6 338 74.3
unitig_22.g6802 Utricularia gibba HOM05D004961 ORTHO05D006258 3.4e-145 519.6 320 76.9
ATR0582G166 Amborella trichopoda HOM05D004961 ORTHO05D006258 1.7e-144 517.3 569 48.3
SMO164G0066 Selaginella moellendorffii HOM05D004961 ORTHO05D006258 4.3e-124 449.5 391 56.5
SMO358G0144 Selaginella moellendorffii HOM05D004961 ORTHO05D006258 5.4e-119 432.6 391 56.3
Nn1g01213 Nelumbo nucifera HOM05D004961 ORTHO05D006258 1.1e-116 424.9 287 70.0
BcaB02g07397 Brassica carinata HOM05D004961 ORTHO05D006258 8.7e-93 345.5 352 56.0
SGA_v2.0_scaffold43G16471 Striga asiatica HOM05D004961 ORTHO05D006258 5.3e-82 309.7 584 35.1
Cpa.g.sc18.116 Carica papaya HOM05D004961 ORTHO05D006258 6.3e-75 286.2 610 32.5
BcaC07g40606 Brassica carinata HOM05D003135 ORTHO05D003715 5.1e-69 266.5 392 43.1
unitig_22.g6801 Utricularia gibba HOM05D004961 ORTHO05D006258 2.6e-65 254.2 219 58.0
BcaC07g40608 Brassica carinata HOM05D003135 ORTHO05D006258 5.7e-52 209.9 165 63.6
Zm00001eb010600 Zea mays HOM05D004961 ORTHO05D006258 1.2e-38 165.6 151 55.0
SMO115G0102 Selaginella moellendorffii HOM05D004961 ORTHO05D037335 5.0e-32 143.7 312 32.1
BcaNung07139 Brassica carinata HOM05D004961 ORTHO05D006258 2.5e-31 141.4 93 73.1
BcaNung07137 Brassica carinata HOM05D004961 ORTHO05D006258 9.2e-26 122.9 77 76.6
HanXRQChr16g0519231 Helianthus annuus HOM05D004961 ORTHO05D006258 7.3e-23 113.2 105 58.1
MELO3C015747.2 Cucumis melo HOM05D004961 ORTHO05D044953 3.2e-18 97.8 113 51.3
BcaNung07135 Brassica carinata HOM05D004961 ORTHO05D006258 4.1e-18 97.4 92 56.5
AagrBONN_evm.TU.Sc2ySwM_344.1101 Anthoceros agrestis HOM05D004961 ORTHO05D006258 2.1e-17 95.1 189 31.2
SMO334G0060 Selaginella moellendorffii HOM05D004961 ORTHO05D377666 6.2e-14 83.6 147 31.3
BcaC07g40607 Brassica carinata HOM05D003135 ORTHO05D023343 4.6e-09 67.4 38 76.3
HanXRQChr12g0366651 Helianthus annuus HOM05D001845 ORTHO05D001878 1.3e-08 65.9 58 58.6


User provided reference genes

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