Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_23844_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 0.0e+00 1475.7 746 100.0
Ca_30746_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 0.0e+00 1391.7 701 100.0
Ca_22549_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 2.5e-248 862.4 1184 48.4
Ca_14156_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 2.3e-246 855.9 1376 43.0
Ca_22528_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 5.1e-246 854.7 1107 49.1
Ca_25846_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 9.7e-229 797.3 878 54.6
Ca_14742_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 2.0e-213 746.5 777 57.3
Ca_05875_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 7.0e-211 738.0 1053 46.7
Ca_11659_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 2.6e-205 719.5 618 64.7
Ca_14697_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 5.9e-202 708.4 714 58.8
Ca_14763_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 8.3e-196 688.0 1200 41.2
Ca_30934_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 1.9e-192 676.8 796 52.0
Ca_19239_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 1.4e-190 670.6 1023 45.7
Ca_24116_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 2.8e-183 646.4 967 45.6
Ca_04090_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 1.8e-174 617.1 735 52.7
Ca_22741_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 2.4e-174 616.7 981 42.5
Ca_14332_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 1.7e-156 557.4 378 77.5
Ca_05672_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 2.2e-156 557.0 692 50.1
Ca_23895_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 1.2e-149 534.6 584 57.7
Ca_23845_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 9.7e-136 488.4 679 47.3
Ca_00995_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 4.5e-133 479.6 725 46.2
Ca_15184_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 1.8e-126 457.6 717 44.9
Ca_30800_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 4.4e-120 436.4 603 47.4
Ca_19341_v3 Cicer arietinum L. HOM05D005324 ORTHO05D000048 1.5e-115 421.4 468 54.3
Ca_03092_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 1.6e-101 374.8 548 47.3
Ca_11652_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 7.7e-101 372.5 902 36.5
Ca_14762_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 7.2e-99 365.9 295 65.8
Ca_19340_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 5.6e-91 339.7 244 77.5
Lj2g0007658 Lotus japonicus HOM05D005324 ORTHO05D001185 2.6e-88 330.9 693 33.6
Lj3g0022640 Lotus japonicus HOM05D005324 ORTHO05D001185 5.9e-85 319.7 467 40.5
Ca_30430_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 1.2e-82 312.0 257 62.3
Ca_13672_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 2.6e-80 304.3 252 61.5
Ca_25326_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 1.4e-78 298.5 224 70.1
Lj6g0006708 Lotus japonicus HOM05D005324 ORTHO05D001185 1.3e-76 292.0 464 39.7
Atru.chr7.181 Acer truncatum HOM05D005324 ORTHO05D001185 6.2e-74 283.1 433 36.3
Ca_21962_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 4.1e-70 270.4 276 56.5
Ca_02976_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 1.2e-69 268.9 585 36.6
Lj6g0011364 Lotus japonicus HOM05D005324 ORTHO05D001185 7.8e-69 266.2 904 29.2
Ca_24087_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 3.0e-68 264.2 463 40.0
Ca_03098_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 5.6e-67 260.0 131 90.8
Glyma.11G180400 Glycine max HOM05D005324 ORTHO05D001185 4.7e-66 256.9 706 31.7
Atru.chr4.1769 Acer truncatum HOM05D005324 ORTHO05D001185 6.2e-66 256.5 415 37.1
Ca_05166_v3 Cicer arietinum L. HOM05D005324 ORTHO05D000002 3.1e-65 254.2 454 42.7
Glyma.19G076000 Glycine max HOM05D005324 ORTHO05D001185 1.3e-63 248.8 628 34.7
Ca_05433_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 1.9e-62 245.0 340 44.1
Lj4g0014350 Lotus japonicus HOM05D005324 ORTHO05D001185 1.3e-60 238.8 1062 25.9
Ca_07874_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 9.6e-59 232.6 309 48.9
Ca_20262_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 1.4e-57 228.8 172 72.7
Ca_07873_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 2.4e-57 228.0 131 80.9
Ca_19342_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 1.4e-54 218.8 131 78.6
Ca_05670_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 2.7e-53 214.5 131 76.3
Ca_30985_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 2.7e-53 214.5 131 76.3
Atru.chr4.959 Acer truncatum HOM05D005324 ORTHO05D001185 8.7e-52 209.5 325 35.7
Ca_03097_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 1.5e-51 208.8 125 76.8
Atru.chr9.330 Acer truncatum HOM05D005324 ORTHO05D001185 1.9e-51 208.4 319 37.9
Lj6g0018849 Lotus japonicus HOM05D005324 ORTHO05D001185 6.2e-50 203.4 1157 24.3
Ca_04347_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 2.4e-49 201.4 131 69.5
Ca_18104_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 1.3e-47 195.7 573 34.0
Atru.chr13.2110 Acer truncatum HOM05D005324 ORTHO05D001185 2.9e-47 194.5 272 40.1
Thhalv10012231m.g Eutrema salsugineum HOM05D003376 ORTHO05D001185 4.9e-47 193.7 462 31.0
Thhalv10028344m.g Eutrema salsugineum HOM05D003376 ORTHO05D001185 6.4e-47 193.4 440 31.8
Atru.chr5.1824 Acer truncatum HOM05D005324 ORTHO05D001185 5.4e-46 190.3 207 44.4
Ca_13201_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 7.1e-46 189.9 129 67.4
Ca_05167_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 1.2e-45 189.1 186 58.6
Atru.chr4.310 Acer truncatum HOM05D005324 ORTHO05D001185 5.1e-44 183.7 290 35.5
Thhalv10023188m.g Eutrema salsugineum HOM05D003376 ORTHO05D000002 3.7e-42 177.6 451 30.6
Ca_23425_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 4.8e-42 177.2 112 83.9
Atru.chr5.1763 Acer truncatum HOM05D005324 ORTHO05D001185 6.9e-41 173.3 292 37.0
Lj4g0024804 Lotus japonicus HOM05D005324 ORTHO05D001185 1.2e-40 172.6 872 26.3
Atru.chr10.1416 Acer truncatum HOM05D005324 ORTHO05D001185 9.9e-40 169.5 813 24.8
Thhalv10028343m.g Eutrema salsugineum HOM05D003376 ORTHO05D001185 2.9e-39 167.9 444 30.4
AL1G57140 Arabidopsis lyrata HOM05D003376 ORTHO05D001185 2.4e-38 164.9 476 30.7
Ca_13202_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 3.2e-38 164.5 523 31.9
Atru.chr1.2264 Acer truncatum HOM05D005324 ORTHO05D001185 1.6e-37 162.2 253 37.5
Ca_28515_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 4.6e-37 160.6 87 87.4
Glyma.06G234900 Glycine max HOM05D005324 ORTHO05D001185 1.0e-36 159.5 275 36.0
Ca_13200_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 1.3e-36 159.1 303 39.3
Ca_29875_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 1.3e-36 159.1 303 39.3
AL88U10020 Arabidopsis lyrata HOM05D003376 ORTHO05D001185 1.8e-36 158.7 441 31.3
Thhalv10003417m.g Eutrema salsugineum HOM05D003376 ORTHO05D000048 1.8e-36 158.7 449 31.0
COL.COLO4_29280 Corchorus olitorius HOM05D003376 ORTHO05D001185 2.3e-36 158.3 615 27.2
Thhalv10002934m.g Eutrema salsugineum HOM05D003376 ORTHO05D001185 3.0e-36 157.9 557 29.6
Ca_05669_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 5.1e-36 157.1 86 77.9
AL8G17310 Arabidopsis lyrata HOM05D003376 ORTHO05D001185 1.1e-35 156.0 452 30.1
AL6G42760 Arabidopsis lyrata HOM05D003376 ORTHO05D001185 1.9e-35 155.2 467 29.6
Ca_30799_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 4.3e-35 154.1 126 64.3
CANSAT80G1954 Cannabis sativa HOM05D005324 ORTHO05D001185 7.4e-35 153.3 258 36.8
Ca_29877_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 7.4e-35 153.3 324 40.1
AL8G17320 Arabidopsis lyrata HOM05D003376 ORTHO05D001185 1.1e-33 149.4 463 29.6
Atru.chr3.3306 Acer truncatum HOM05D000477 ORTHO05D001185 1.4e-33 149.1 401 29.7
Lj1g0026229 Lotus japonicus HOM05D005324 ORTHO05D001185 1.4e-33 149.1 474 28.1
AL88U10010 Arabidopsis lyrata HOM05D003376 ORTHO05D001185 3.1e-33 147.9 589 26.7
Atru.chr4.605 Acer truncatum HOM05D005324 ORTHO05D001185 4.0e-33 147.5 415 28.0
Cc00_g34090 Coffea canephora HOM05D005324 ORTHO05D001185 6.5e-31 140.2 436 28.4
Ca_01226_v3 Cicer arietinum L. HOM05D003326 ORTHO05D001185 1.1e-30 139.4 76 90.8
Ca_06253_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 3.2e-30 137.9 249 39.8
Medtr3g436680 Medicago truncatula HOM05D005324 ORTHO05D001185 6.0e-29 133.7 261 36.8
Thhalv10028029m.g Eutrema salsugineum HOM05D003376 ORTHO05D001185 1.8e-28 132.1 393 28.5
Thhalv10002230m.g Eutrema salsugineum HOM05D003376 ORTHO05D001185 2.3e-28 131.7 395 28.1
Thecc.01G138000 Theobroma cacao HOM05D005324 ORTHO05D001185 8.7e-28 129.8 211 36.0
A09p27420 Brassica napus HOM05D003376 ORTHO05D001185 9.7e-27 126.3 321 32.7
Cc00_g17730 Coffea canephora HOM05D003326 ORTHO05D001185 2.1e-26 125.2 213 32.4
AL8G17360 Arabidopsis lyrata HOM05D003376 ORTHO05D011035 2.8e-26 124.8 397 30.5
A05p12450 Brassica napus HOM05D003376 ORTHO05D001185 2.8e-26 124.8 321 32.4
HanXRQChr09g0262551 Helianthus annuus HOM05D003376 ORTHO05D001185 3.7e-26 124.4 208 33.2
Lj2g0023412 Lotus japonicus HOM05D005324 ORTHO05D018017 6.3e-26 123.6 105 54.3
Atru.chr1.2372 Acer truncatum HOM05D005324 ORTHO05D001185 8.2e-26 123.2 158 38.6
ECA248G1715 Erigeron canadensis HOM05D005324 ORTHO05D001185 2.4e-25 121.7 209 33.5
PGSC0003DMG400042319 Solanum tuberosum HOM05D019581 ORTHO05D018017 3.1e-25 121.3 203 34.5
Ca_15185_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 4.1e-25 120.9 65 86.2
Ca_13666_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 6.9e-25 120.2 71 76.1
Thhalv10000705m.g Eutrema salsugineum HOM05D003376 ORTHO05D001185 1.5e-24 119.0 343 31.5
Ca_14696_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 3.4e-24 117.9 65 83.1
AL6G37690 Arabidopsis lyrata HOM05D003376 ORTHO05D001185 5.9e-24 117.1 336 30.7
AL6G41750 Arabidopsis lyrata HOM05D003376 ORTHO05D000002 4.2e-22 110.9 289 31.1
Ca_04091_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 5.5e-22 110.5 71 76.1
Ca_30525_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 5.5e-22 110.5 71 76.1
C07p27990 Brassica napus HOM05D003376 ORTHO05D001185 4.6e-21 107.5 539 27.1
Atru.chr1.2076 Acer truncatum HOM05D005324 ORTHO05D001185 8.7e-20 103.2 323 26.0
Lj3g0012797 Lotus japonicus HOM05D003326 ORTHO05D001185 9.7e-19 99.8 65 72.3
arahy.Tifrunner.gnm1.ann1.BZ6XIA Arachis hypogaea HOM05D003326 ORTHO05D000002 1.6e-18 99.0 64 70.3
Lj2g0012661 Lotus japonicus HOM05D005324 ORTHO05D011089 4.8e-18 97.4 65 69.2
Medtr2g048620 Medicago truncatula HOM05D001200 ORTHO05D002731 1.4e-17 95.9 99 58.6
Atru.chr1.2263 Acer truncatum HOM05D005324 ORTHO05D001185 5.3e-17 94.0 198 30.8
Thhalv10001272m.g Eutrema salsugineum HOM05D003376 ORTHO05D001185 5.3e-17 94.0 656 22.4
Atru.chr3.2328 Acer truncatum HOM05D005324 ORTHO05D001185 6.9e-17 93.6 70 57.1
Atru.chr13.2474 Acer truncatum HOM05D005324 ORTHO05D001185 3.4e-16 91.3 173 34.7
Lj3g0004678 Lotus japonicus HOM05D003326 ORTHO05D001185 1.4e-14 85.9 94 45.7
Atru.chr13.2462 Acer truncatum HOM05D005324 ORTHO05D001185 1.9e-14 85.5 425 25.9
Thhalv10003477m.g Eutrema salsugineum HOM05D003376 ORTHO05D001185 1.9e-14 85.5 143 35.0
Atru.chr4.2110 Acer truncatum HOM05D005324 ORTHO05D001185 2.5e-14 85.1 153 35.3
Atru.chr11.226 Acer truncatum HOM05D005324 ORTHO05D001185 3.2e-14 84.7 60 61.7
Carub.0008s0701 Capsella rubella HOM05D005324 ORTHO05D000800 3.2e-14 84.7 89 52.8
Atru.chr3.2329 Acer truncatum HOM05D003326 ORTHO05D001185 1.6e-13 82.4 131 40.5
Atru.chr1.3843 Acer truncatum HOM05D005324 ORTHO05D000002 4.6e-13 80.9 68 57.4
Thecc.07G158200 Theobroma cacao HOM05D005324 ORTHO05D001185 1.0e-12 79.7 183 29.0
Atru.chr9.596 Acer truncatum HOM05D005324 ORTHO05D001185 1.8e-12 79.0 156 34.0
BcaB05g22490 Brassica carinata HOM05D003376 ORTHO05D001185 3.9e-12 77.8 172 32.6
Ca_24137_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 6.7e-12 77.0 209 30.1
Ca_02242_v3 Cicer arietinum L. HOM05D003326 ORTHO05D001185 1.1e-11 76.3 53 64.2
Atru.chr4.961 Acer truncatum HOM05D003326 ORTHO05D001185 1.5e-11 75.9 92 42.4
Lj3g0011497 Lotus japonicus HOM05D005324 ORTHO05D001185 2.0e-11 75.5 295 24.4
MBI14_g23481_MAGBIO Magnolia biondii HOM05D005324 ORTHO05D001185 3.3e-11 74.7 135 35.6
BolC1t03802H Brassica oleracea HOM05D003376 ORTHO05D001185 4.4e-11 74.3 203 32.5
AL8G17340 Arabidopsis lyrata HOM05D003376 ORTHO05D011035 7.4e-11 73.6 65 50.8
QL07p038177 Quercus lobata HOM05D003376 ORTHO05D000002 9.7e-11 73.2 72 48.6
Atru.chr8.643 Acer truncatum HOM05D005324 ORTHO05D001185 1.7e-10 72.4 94 42.6
Cc00_g07770 Coffea canephora HOM05D005324 ORTHO05D011089 1.7e-10 72.4 66 54.5
Thhalv10027218m.g Eutrema salsugineum HOM05D003376 ORTHO05D001185 2.2e-10 72.0 634 23.7
MBI03_g38333_MAGBIO Magnolia biondii HOM05D005324 ORTHO05D001185 2.2e-10 72.0 173 33.5
A06p25220 Brassica napus HOM05D003376 ORTHO05D001185 3.7e-10 71.2 198 30.8
Cc00_g07190 Coffea canephora HOM05D003376 ORTHO05D000002 3.7e-10 71.2 66 53.0
Carub.0002s0911 Capsella rubella HOM05D003376 ORTHO05D011089 4.8e-10 70.9 87 44.8
Cc00_g28290 Coffea canephora HOM05D003326 ORTHO05D001185 6.3e-10 70.5 270 28.1
Atru.chr9.333 Acer truncatum HOM05D005324 ORTHO05D001185 8.2e-10 70.1 97 41.2
AL8G17350 Arabidopsis lyrata HOM05D003376 ORTHO05D000002 8.2e-10 70.1 65 49.2
AL3G45070 Arabidopsis lyrata HOM05D003376 ORTHO05D011035 1.4e-09 69.3 65 49.2
COL.COLO4_29705 Corchorus olitorius HOM05D029132 ORTHO05D011089 4.1e-09 67.8 92 43.5
Thhalv10001103m.g Eutrema salsugineum HOM05D003376 ORTHO05D001185 4.1e-09 67.8 160 31.9
Gorai.002G111800 Gossypium raimondii HOM05D003376 ORTHO05D011089 3.4e-08 64.7 80 46.2
ECA248G1318 Erigeron canadensis HOM05D003376 ORTHO05D001185 1.0e-07 63.2 240 27.1
ECA246G4097 Erigeron canadensis HOM05D003376 ORTHO05D000002 1.3e-07 62.8 66 51.5
ECA236G2931 Erigeron canadensis HOM05D003376 ORTHO05D001185 1.7e-07 62.4 231 27.7
Cc00_g33410 Coffea canephora HOM05D003376 ORTHO05D011089 3.8e-07 61.2 60 53.3
ECA248G2939 Erigeron canadensis HOM05D003376 ORTHO05D011089 3.8e-07 61.2 66 50.0
Gorai.007G230600 Gossypium raimondii HOM05D013520 ORTHO05D011089 3.8e-07 61.2 65 46.2
COL.COLO4_27206 Corchorus olitorius HOM05D003326 ORTHO05D001185 5.0e-07 60.8 71 38.0
Cc00_g23170 Coffea canephora HOM05D003376 ORTHO05D011089 6.5e-07 60.5 62 46.8
C07p11800 Brassica napus HOM05D003376 ORTHO05D001185 1.9e-06 58.9 79 36.7
Carub.0002s1007 Capsella rubella HOM05D003376 ORTHO05D001185 2.5e-06 58.5 308 25.3
Thhalv10001178m.g Eutrema salsugineum HOM05D003376 ORTHO05D011035 9.4e-06 56.6 43 53.5


User provided reference genes

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