Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_23755_v3 Cicer arietinum L. HOM05D006418 ORTHO05D008063 2.5e-189 665.2 320 100.0
TPR.G17586 Trifolium pratense HOM05D006418 ORTHO05D008063 1.5e-173 612.8 321 92.8
Medtr8g032700 Medicago truncatula HOM05D006418 ORTHO05D008063 1.9e-173 612.5 320 93.1
Glyma.03G017600 Glycine max HOM05D006418 ORTHO05D008063 2.8e-164 582.0 325 87.1
Lj3g0006580 Lotus japonicus HOM05D006418 ORTHO05D008063 4.0e-163 578.2 326 85.9
Phvul.010G092700 Phaseolus vulgaris HOM05D006418 ORTHO05D008063 8.6e-158 560.5 326 83.7
Lalb_Chr10g0097531 Lupinus albus HOM05D006418 ORTHO05D008063 4.3e-157 558.1 318 84.6
VMungo0331G0376 Vigna mungo HOM05D006418 ORTHO05D008063 2.1e-156 555.8 326 83.4
arahy.Tifrunner.gnm1.ann1.K1NG1D Arachis hypogaea HOM05D006418 ORTHO05D008063 2.8e-156 555.4 324 84.0
CiPaw.01G053600 Carya illinoinensis HOM05D006418 ORTHO05D008063 1.3e-153 546.6 323 81.4
TAR375G0873 Trochodendron aralioides HOM05D006418 ORTHO05D008063 4.9e-153 544.7 322 80.1
Duzib138G1515 Durio zibethinus HOM05D006418 ORTHO05D008063 1.1e-152 543.5 323 80.2
Actinidia38288 Actinidia chinensis HOM05D006418 ORTHO05D008063 1.9e-152 542.7 322 80.4
MD07G1128500 Malus domestica HOM05D006418 ORTHO05D008063 1.9e-152 542.7 321 80.7
FAN03G2411 Fragaria x ananassa HOM05D006418 ORTHO05D008063 7.0e-152 540.8 323 80.5
FvH4_7g13130 Fragaria vesca HOM05D006418 ORTHO05D008063 3.5e-151 538.5 323 80.5
FAN06G0540 Fragaria x ananassa HOM05D006418 ORTHO05D008063 3.5e-151 538.5 323 80.5
FAN06G3976 Fragaria x ananassa HOM05D006418 ORTHO05D008063 3.5e-151 538.5 323 80.5
CANSAT56G2190 Cannabis sativa HOM05D006418 ORTHO05D008063 7.8e-151 537.3 326 79.1
GSVIVG01027527001 Vitis vinifera HOM05D006418 ORTHO05D008063 1.3e-150 536.6 317 80.1
FAN10G2923 Fragaria x ananassa HOM05D006418 ORTHO05D008063 2.3e-150 535.8 323 80.2
Ciclev10021113m.g Citrus clementina HOM05D006418 ORTHO05D008063 3.0e-150 535.4 316 80.1
Gorai.007G095100 Gossypium raimondii HOM05D006418 ORTHO05D008063 3.0e-150 535.4 311 80.1
COL.COLO4_12625 Corchorus olitorius HOM05D006418 ORTHO05D008063 3.9e-150 535.0 323 78.0
Potri.002G153100 Populus trichocarpa HOM05D006418 ORTHO05D008063 3.9e-150 535.0 315 80.0
Aqoxy5G03975 Aquilegia oxysepala HOM05D006418 ORTHO05D008063 6.6e-150 534.3 298 82.2
CSS0035566 Camellia sinensis var. sinensis HOM05D006418 ORTHO05D008063 1.1e-149 533.5 309 80.6
Cfa004182 Carpinus fangiana HOM05D006418 ORTHO05D008063 1.5e-149 533.1 295 84.7
Hma1.2p1_0033F.1_g020630 Hydrangea macrophylla HOM05D006418 ORTHO05D008063 1.9e-149 532.7 297 82.2
Gohir.D11G089100 Gossypium hirsutum HOM05D006418 ORTHO05D008063 2.5e-149 532.3 311 79.7
Rhsim07G0021100 Rhododendron simsii HOM05D006418 ORTHO05D008063 3.3e-149 531.9 326 78.5
RcHm_v2.0_Chr1g0352261 Rosa chinensis HOM05D006418 ORTHO05D008063 4.3e-149 531.6 307 81.8
Nn1g01350 Nelumbo nucifera HOM05D006418 ORTHO05D008063 5.6e-149 531.2 324 78.1
THA.LOC104827683 Tarenaya hassleriana HOM05D006418 ORTHO05D008063 5.6e-149 531.2 322 78.3
FAN01G2003 Fragaria x ananassa HOM05D006418 ORTHO05D008063 7.3e-149 530.8 323 79.3
Eucgr.E00217 Eucalyptus grandis HOM05D006418 ORTHO05D008063 9.5e-149 530.4 324 76.5
Sabra02G0121400 Salix brachista HOM05D006418 ORTHO05D008063 2.1e-148 529.3 318 78.3
vmacro13338 Vaccinium macrocarpon HOM05D006418 ORTHO05D008063 2.1e-148 529.3 298 81.9
ClCG05G001910 Citrullus lanatus HOM05D006418 ORTHO05D008063 8.1e-148 527.3 318 79.2
Dinv32422 Davidia involucrata HOM05D006418 ORTHO05D008063 1.1e-147 526.9 295 82.7
PGR042G1311 Punica granatum HOM05D006418 ORTHO05D008063 4.0e-147 525.0 311 79.7
TWI59G1449 Tripterygium wilfordii HOM05D006418 ORTHO05D008063 5.2e-147 524.6 303 80.2
CiPaw.01G023800 Carya illinoinensis HOM05D006418 ORTHO05D008063 6.8e-147 524.2 325 78.2
Cc02_g37230 Coffea canephora HOM05D006418 ORTHO05D008063 2.6e-146 522.3 308 79.9
Aa31LG10G15180 Aethionema arabicum HOM05D006418 ORTHO05D008063 4.4e-146 521.5 320 77.2
Carub.0005s2773 Capsella rubella HOM05D006418 ORTHO05D008063 4.4e-146 521.5 322 77.3
Thhalv10006098m.g Eutrema salsugineum HOM05D006418 ORTHO05D008063 4.9e-145 518.1 322 76.4
Lj7A519G38 Lonicera japonica HOM05D006418 ORTHO05D008063 8.3e-145 517.3 301 80.4
Psat4g151800 Pisum sativum HOM05D006418 ORTHO05D008063 8.3e-145 517.3 271 90.4
AT3G61080 Arabidopsis thaliana HOM05D006418 ORTHO05D008063 1.1e-144 516.9 323 76.2
CAN.G170.50 Capsicum annuum HOM05D006418 ORTHO05D008063 1.4e-144 516.5 326 75.8
AL5G43290 Arabidopsis lyrata HOM05D006418 ORTHO05D008063 2.4e-144 515.8 323 75.5
Sopen01g037560 Solanum pennellii HOM05D006418 ORTHO05D008063 2.4e-144 515.8 326 75.5
CARHR171390 Cardamine hirsuta HOM05D006418 ORTHO05D008063 3.2e-144 515.4 322 76.4
Migut.B01688 Erythranthe guttata HOM05D006418 ORTHO05D008063 3.2e-144 515.4 304 80.3
Peaxi162Scf00021g00525 Petunia axillaris HOM05D006418 ORTHO05D008063 3.2e-144 515.4 312 77.2
EL10Ac1g00963 Beta vulgaris HOM05D006418 ORTHO05D008063 5.4e-144 514.6 304 78.6
Nitab4.5_0010430g0060 Nicotiana tabacum HOM05D006418 ORTHO05D008063 5.4e-144 514.6 318 76.4
Hund27325 Selenicereus undatus HOM05D006418 ORTHO05D008063 1.2e-143 513.5 326 74.5
Solyc01g091780.4 Solanum lycopersicum HOM05D006418 ORTHO05D008063 2.1e-143 512.7 326 75.2
PGSC0003DMG400017054 Solanum tuberosum HOM05D006418 ORTHO05D008063 2.7e-143 512.3 326 75.2
ECA236G1148 Erigeron canadensis HOM05D006418 ORTHO05D008063 6.0e-143 511.1 298 79.9
Sp5g02280 Schrenkiella parvula HOM05D006418 ORTHO05D008063 7.8e-143 510.8 322 75.5
PSO063G7157 Papaver somniferum HOM05D006418 ORTHO05D008063 2.3e-142 509.2 312 77.2
BcaC08g45098 Brassica carinata HOM05D006418 ORTHO05D008063 3.3e-141 505.4 322 76.1
BcaB02g07390 Brassica carinata HOM05D006418 ORTHO05D008063 7.3e-141 504.2 321 75.4
DCAR_025170 Daucus carota HOM05D006418 ORTHO05D008063 7.3e-141 504.2 305 78.0
HanXRQChr06g0169031 Helianthus annuus HOM05D006418 ORTHO05D008063 1.2e-140 503.4 319 74.9
C06p27060 Brassica napus HOM05D006418 ORTHO05D008063 4.0e-139 498.4 329 74.5
BolC6t37878H Brassica oleracea HOM05D006418 ORTHO05D008063 4.0e-139 498.4 329 74.5
A07p25300 Brassica napus HOM05D006418 ORTHO05D008063 1.5e-138 496.5 329 73.6
BraA07t30173Z Brassica rapa HOM05D006418 ORTHO05D008063 1.5e-138 496.5 329 73.6
MELO3C006151.2 Cucumis melo HOM05D006418 ORTHO05D008063 3.4e-138 495.4 358 70.1
Nitab4.5_0004550g0130 Nicotiana tabacum HOM05D006418 ORTHO05D008063 3.4e-138 495.4 319 74.3
ATR0757G200 Amborella trichopoda HOM05D006418 ORTHO05D008063 1.1e-136 490.3 298 76.2
Os03g0117800 Oryza sativa ssp. japonica HOM05D006418 ORTHO05D008063 3.2e-136 488.8 308 73.7
Zm00001eb001200 Zea mays HOM05D006418 ORTHO05D008063 3.2e-136 488.8 295 76.6
HPP92_014577 Vanilla planifolia HOM05D006418 ORTHO05D008063 5.4e-136 488.0 292 77.1
SalBow3G2367 Salvia bowleyana HOM05D006418 ORTHO05D008063 3.9e-134 481.9 322 73.3
Manes.01G262400 Manihot esculenta HOM05D006418 ORTHO05D008063 3.9e-126 455.3 277 76.9
Prupe.2G154600 Prunus persica HOM05D006418 ORTHO05D008063 1.6e-124 449.9 241 86.7
Thecc.01G368600 Theobroma cacao HOM05D006418 ORTHO05D008063 2.1e-124 449.5 269 78.1
CDE01G0065 Ceratophyllum demersum HOM05D006418 ORTHO05D008063 4.0e-123 445.3 260 77.3
Atru.chr5.403 Acer truncatum HOM05D006418 ORTHO05D008063 6.9e-123 444.5 267 79.0
CsaV3_3G009310 Cucumis sativus L. HOM05D006418 ORTHO05D008063 3.4e-122 442.2 241 85.1
Mapoly0138s0005 Marchantia polymorpha HOM05D006418 ORTHO05D008063 3.8e-121 438.7 289 71.3
Sed0024588 Sechium edule HOM05D006418 ORTHO05D008063 7.1e-120 434.5 241 83.8
SGA_v2.0_scaffold95G28870 Striga asiatica HOM05D006418 ORTHO05D008063 3.3e-117 425.6 318 68.6
AagrBONN_evm.TU.Sc2ySwM_344.2134 Anthoceros agrestis HOM05D006418 ORTHO05D008063 7.4e-117 424.5 289 67.8
Pp3c15_5030 Physcomitrium patens HOM05D006418 ORTHO05D008063 2.8e-116 422.5 290 68.3
AUR62004291 Chenopodium quinoa HOM05D006418 ORTHO05D008063 6.9e-115 417.9 248 77.4
CBR_g38943 Chara braunii HOM05D006418 ORTHO05D008063 2.0e-114 416.4 292 65.1
Lsat_1_v5_gn_7_8501 Lactuca sativa HOM05D006418 ORTHO05D008063 3.8e-113 412.1 263 74.1
QL08p050652 Quercus lobata HOM05D006418 ORTHO05D008063 3.8e-113 412.1 251 79.3
SMO356G0133 Selaginella moellendorffii HOM05D006418 ORTHO05D008063 2.4e-112 409.5 287 66.9
Oeu024416.1 Olea europaea HOM05D006418 ORTHO05D008063 2.1e-111 406.4 287 69.3
Cpa.g.sc18.197 Carica papaya HOM05D006418 ORTHO05D008063 2.5e-104 382.9 243 77.0
unitig_22.g5367 Utricularia gibba HOM05D006418 ORTHO05D008063 6.9e-99 364.8 204 81.4
Cc02_g37660 Coffea canephora HOM05D006418 ORTHO05D008063 1.0e-94 350.9 192 82.8
Gohir.A11G085000 Gossypium hirsutum HOM05D006418 ORTHO05D008063 1.9e-93 346.7 182 85.2
Hma1.2p1_0033F.1_g020640 Hydrangea macrophylla HOM05D006418 ORTHO05D008063 5.1e-86 322.0 256 62.9
MBI12_g25033_MAGBIO Magnolia biondii HOM05D006418 ORTHO05D008063 4.4e-85 318.9 230 65.2
SEGI_14549 Sequoiadendron giganteum HOM05D006418 ORTHO05D008063 1.5e-69 267.3 170 72.4
MCO14G366 Micromonas commoda HOM05D006418 ORTHO05D008063 2.8e-68 263.1 298 48.3
Cre12.g542202 Chlamydomonas reinhardtii HOM05D006418 ORTHO05D008063 7.0e-67 258.5 309 46.3
arahy.Tifrunner.gnm1.ann1.N7AMXP Arachis hypogaea HOM05D006418 ORTHO05D008063 2.7e-63 246.5 162 78.4
Sc26g0001060 Simmondsia chinensis HOM05D001335 ORTHO05D001184 9.8e-61 238.0 188 64.9
Haze_15226 Corylus avellana HOM05D006418 ORTHO05D008063 2.5e-56 223.4 136 78.7
FAN10G0301 Fragaria x ananassa HOM05D006418 ORTHO05D008063 1.6e-55 220.7 192 61.5
PRCOL_00000121 Prasinoderma coloniale HOM05D006418 ORTHO05D008063 6.8e-54 215.3 294 40.1
Glyma.07G078900 Glycine max HOM05D006418 ORTHO05D008063 3.8e-49 199.5 179 66.5
Pp3c1_6480 Physcomitrium patens HOM05D006418 ORTHO05D008063 9.2e-43 178.3 277 37.5
Sabra14G0055300 Salix brachista HOM05D006418 ORTHO05D008063 3.0e-41 173.3 275 40.0
Sc26g0001070 Simmondsia chinensis HOM05D006418 ORTHO05D008063 3.3e-40 169.9 147 61.9
Gohir.A11G084900 Gossypium hirsutum HOM05D006418 ORTHO05D008063 7.3e-40 168.7 110 73.6
Ca_28970_v3 Cicer arietinum L. HOM05D006418 ORTHO05D008063 2.3e-33 147.1 280 34.3
Cfa024407 Carpinus fangiana HOM05D006418 ORTHO05D008063 4.4e-29 132.9 341 31.7
ATR0620G127 Amborella trichopoda HOM05D006418 ORTHO05D008063 3.6e-23 113.2 157 40.1
unitig_22.g5366 Utricularia gibba HOM05D003447 ORTHO05D003967 1.9e-19 100.9 88 64.8
CiPaw.01G052800 Carya illinoinensis HOM05D006418 ORTHO05D008063 2.7e-18 97.1 77 64.9
Cc00_g22860 Coffea canephora HOM05D006418 ORTHO05D008063 1.5e-13 81.3 57 68.4
SEGI_36912 Sequoiadendron giganteum HOM05D006418 ORTHO05D008063 5.8e-13 79.3 54 63.0
MBI16_g15528_MAGBIO Magnolia biondii HOM05D006418 ORTHO05D008063 3.9e-09 66.6 42 71.4
Actinidia27830 Actinidia chinensis HOM05D006418 ORTHO05D008063 1.1e-08 65.1 41 68.3
SEGI_18314 Sequoiadendron giganteum HOM05D006418 ORTHO05D008063 2.4e-06 57.4 68 44.1
MBI11_g05318_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 9.0e-06 55.5 30 80.0


User provided reference genes

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