Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_23710_v3 Cicer arietinum L. HOM05D009128 ORTHO05D011389 3.8e-67 258.1 133 100.0
Ca_03767_v3 Cicer arietinum L. HOM05D009128 ORTHO05D011389 6.3e-62 240.7 132 93.2
Ca_12697_v3 Cicer arietinum L. HOM05D009128 ORTHO05D011389 1.8e-61 239.2 132 92.4
Ca_28512_v3 Cicer arietinum L. HOM05D009128 ORTHO05D011389 5.5e-50 201.1 107 93.5
Ca_31240_v3 Cicer arietinum L. HOM05D009128 ORTHO05D011389 3.9e-48 194.9 132 80.3
Ca_28195_v3 Cicer arietinum L. HOM05D009128 ORTHO05D011389 8.2e-46 187.2 108 88.9
TPR.G27910 Trifolium pratense HOM05D009128 ORTHO05D011389 1.2e-44 183.3 131 70.2
Ca_14150_v3 Cicer arietinum L. HOM05D009128 ORTHO05D011389 2.6e-44 182.2 132 75.0
Peaxi162Scf00116g00003 Petunia axillaris HOM05D009128 ORTHO05D011389 1.0e-43 180.3 129 71.3
Ca_05874_v3 Cicer arietinum L. HOM05D009128 ORTHO05D011389 1.7e-43 179.5 132 75.8
Peaxi162Scf00238g00610 Petunia axillaris HOM05D009128 ORTHO05D011389 2.9e-43 178.7 129 71.3
Peaxi162Scf00206g01515 Petunia axillaris HOM05D009128 ORTHO05D011389 1.6e-41 172.9 130 69.2
Peaxi162Scf01294g00128 Petunia axillaris HOM05D009128 ORTHO05D011389 1.4e-40 169.9 130 68.5
Peaxi162Scf00299g00004 Petunia axillaris HOM05D009128 ORTHO05D011389 3.9e-40 168.3 130 66.9
Lalb_Chr21g0312571 Lupinus albus HOM05D009128 ORTHO05D011389 2.9e-27 125.6 116 53.4
Solyc04g024880.3 Solanum lycopersicum HOM05D009128 ORTHO05D011389 5.2e-24 114.8 106 59.4
Ca_28394_v3 Cicer arietinum L. HOM05D009128 ORTHO05D011389 6.8e-24 114.4 59 98.3
Peaxi162Scf00085g00185 Petunia axillaris HOM05D009128 ORTHO05D011389 4.7e-17 91.7 116 50.0
Peaxi162Scf00304g00124 Petunia axillaris HOM05D009128 ORTHO05D011389 2.6e-15 85.9 76 55.3
arahy.Tifrunner.gnm1.ann1.NE3TTV Arachis hypogaea HOM05D002954 ORTHO05D003353 1.8e-13 79.7 115 36.5
Medtr4g026570 Medicago truncatula HOM05D009128 ORTHO05D011389 3.2e-13 79.0 51 68.6
Solyc01g010405.1 Solanum lycopersicum HOM05D002954 ORTHO05D003353 3.2e-13 79.0 130 40.0
Solyc11g044937.1 Solanum lycopersicum HOM05D002954 ORTHO05D003353 4.1e-13 78.6 130 37.7
Psat0s2772g0080 Pisum sativum HOM05D002954 ORTHO05D003353 5.4e-13 78.2 128 39.8
PGSC0003DMG400046551 Solanum tuberosum HOM05D009128 ORTHO05D011389 1.2e-12 77.0 72 54.2
arahy.Tifrunner.gnm1.ann1.R7YZCH Arachis hypogaea HOM05D002954 ORTHO05D003353 1.6e-12 76.6 115 35.7
Sopen09g020910 Solanum pennellii HOM05D002954 ORTHO05D003353 1.6e-12 76.6 124 33.1
Lj5g0000508 Lotus japonicus HOM05D002954 ORTHO05D003353 2.7e-12 75.9 129 38.0
arahy.Tifrunner.gnm1.ann1.0Q01G3 Arachis hypogaea HOM05D002954 ORTHO05D003353 3.5e-12 75.5 115 34.8
Glyma.20G055700 Glycine max HOM05D002954 ORTHO05D003353 5.9e-12 74.7 119 33.6
Nitab4.5_0002373g0020 Nicotiana tabacum HOM05D002954 ORTHO05D003353 5.9e-12 74.7 106 40.6
Lj4g0009760 Lotus japonicus HOM05D002954 ORTHO05D003353 1.0e-11 73.9 123 38.2
Solyc10g061955.1 Solanum lycopersicum HOM05D009128 ORTHO05D011389 1.0e-11 73.9 61 62.3
arahy.Tifrunner.gnm1.ann1.ZY1J0Y Arachis hypogaea HOM05D002954 ORTHO05D003353 1.3e-11 73.6 115 34.8
Phvul.003G087300 Phaseolus vulgaris HOM05D002954 ORTHO05D003353 1.3e-11 73.6 113 38.9
Psat5g237440 Pisum sativum HOM05D002954 ORTHO05D003353 1.7e-11 73.2 131 35.1
arahy.Tifrunner.gnm1.ann1.H1PTY0 Arachis hypogaea HOM05D002954 ORTHO05D010308 2.3e-11 72.8 118 35.6
Lj6g0018229 Lotus japonicus HOM05D002954 ORTHO05D003353 2.3e-11 72.8 128 37.5
Lj1g0003177 Lotus japonicus HOM05D002954 ORTHO05D003353 6.6e-11 71.2 109 41.3
arahy.Tifrunner.gnm1.ann1.QKP2RW Arachis hypogaea HOM05D002954 ORTHO05D003353 8.6e-11 70.9 115 33.0
Nitab4.5_0002430g0040 Nicotiana tabacum HOM05D002954 ORTHO05D003353 8.6e-11 70.9 124 37.1
arahy.Tifrunner.gnm1.ann1.N8CY10 Arachis hypogaea HOM05D009662 ORTHO05D003353 1.1e-10 70.5 130 31.5
Nitab4.5_0000229g0050 Nicotiana tabacum HOM05D002954 ORTHO05D003353 1.5e-10 70.1 121 37.2
Nitab4.5_0001076g0100 Nicotiana tabacum HOM05D002954 ORTHO05D003353 2.5e-10 69.3 109 38.5
Peaxi162Scf00485g01219 Petunia axillaris HOM05D002954 ORTHO05D003353 3.3e-10 68.9 128 36.7
Nitab4.5_0000002g0110 Nicotiana tabacum HOM05D002954 ORTHO05D003353 4.3e-10 68.6 128 35.9
Nitab4.5_0000416g0230 Nicotiana tabacum HOM05D002954 ORTHO05D003353 4.3e-10 68.6 121 38.8
VMungo0647G1703 Vigna mungo HOM05D002954 ORTHO05D000002 5.6e-10 68.2 113 38.9
CAN.G125.23 Capsicum annuum HOM05D000107 ORTHO05D000062 7.3e-10 67.8 82 45.1
Peaxi162Scf00002g05111 Petunia axillaris HOM05D002954 ORTHO05D003353 9.5e-10 67.4 109 39.4
arahy.Tifrunner.gnm1.ann1.DXNF3X Arachis hypogaea HOM05D002954 ORTHO05D003353 1.2e-09 67.0 106 36.8
arahy.Tifrunner.gnm1.ann1.9YTX13 Arachis hypogaea HOM05D002954 ORTHO05D003353 1.6e-09 66.6 115 33.0
A05p38910 Brassica napus HOM05D008309 ORTHO05D010308 1.6e-09 66.6 120 38.3
arahy.Tifrunner.gnm1.ann1.C5M9FF Arachis hypogaea HOM05D002954 ORTHO05D000385 2.1e-09 66.2 114 36.0
COL.COLO4_29219 Corchorus olitorius HOM05D001309 ORTHO05D000385 2.8e-09 65.9 119 34.5
Peaxi162Scf00016g01219 Petunia axillaris HOM05D002954 ORTHO05D003353 3.6e-09 65.5 128 34.4
Peaxi162Scf00173g00019 Petunia axillaris HOM05D002954 ORTHO05D003353 3.6e-09 65.5 128 34.4
Sopen04g020530 Solanum pennellii HOM05D002954 ORTHO05D003353 3.6e-09 65.5 100 42.0
Psat5g178080 Pisum sativum HOM05D002954 ORTHO05D003353 4.7e-09 65.1 108 38.0
Sopen11g015860 Solanum pennellii HOM05D002954 ORTHO05D003353 4.7e-09 65.1 100 41.0
Nitab4.5_0000817g0040 Nicotiana tabacum HOM05D002954 ORTHO05D003353 6.1e-09 64.7 104 35.6
Peaxi162Scf00318g00919 Petunia axillaris HOM05D002954 ORTHO05D003353 6.1e-09 64.7 129 36.4
VMungo0464G1442 Vigna mungo HOM05D005949 ORTHO05D006945 8.0e-09 64.3 97 37.1
Nitab4.5_0000051g0340 Nicotiana tabacum HOM05D002954 ORTHO05D003353 1.4e-08 63.5 86 40.7
Nitab4.5_0007501g0010 Nicotiana tabacum HOM05D002954 ORTHO05D003353 1.4e-08 63.5 117 36.8
PGSC0003DMG400036508 Solanum tuberosum HOM05D009128 ORTHO05D011389 1.4e-08 63.5 54 57.4
Nitab4.5_0003353g0020 Nicotiana tabacum HOM05D002954 ORTHO05D003353 2.3e-08 62.8 88 36.4
Phvul.L001985 Phaseolus vulgaris HOM05D002954 ORTHO05D003353 2.3e-08 62.8 105 36.2
Nitab4.5_0003410g0070 Nicotiana tabacum HOM05D002954 ORTHO05D003353 5.2e-08 61.6 97 39.2
Psat3g100040 Pisum sativum HOM05D002954 ORTHO05D003353 5.2e-08 61.6 108 38.9
arahy.Tifrunner.gnm1.ann1.LE5ID3 Arachis hypogaea HOM05D009662 ORTHO05D003353 6.8e-08 61.2 103 33.0
Peaxi162Scf00093g00015 Petunia axillaris HOM05D002954 ORTHO05D010308 6.8e-08 61.2 128 33.6
CiPaw.10G087600 Carya illinoinensis HOM05D001309 ORTHO05D000385 8.9e-08 60.8 109 36.7
CiPaw.16G105200 Carya illinoinensis HOM05D001309 ORTHO05D000385 8.9e-08 60.8 109 36.7
Nitab4.5_0000386g0150 Nicotiana tabacum HOM05D002954 ORTHO05D003353 8.9e-08 60.8 82 47.6
Nitab4.5_0003879g0040 Nicotiana tabacum HOM05D002954 ORTHO05D003353 8.9e-08 60.8 97 37.1
arahy.Tifrunner.gnm1.ann1.5TT13I Arachis hypogaea HOM05D002954 ORTHO05D003353 1.2e-07 60.5 115 33.0
ClCG06G005780 Citrullus lanatus HOM05D001309 ORTHO05D000385 1.2e-07 60.5 94 41.5
Nitab4.5_0000140g0170 Nicotiana tabacum HOM05D002954 ORTHO05D003353 1.2e-07 60.5 86 40.7
arahy.Tifrunner.gnm1.ann1.B3S8NN Arachis hypogaea HOM05D002954 ORTHO05D003353 1.5e-07 60.1 115 31.3
C01p42640 Brassica napus HOM05D008309 ORTHO05D010308 1.5e-07 60.1 114 33.3
Peaxi162Scf00624g00076 Petunia axillaris HOM05D002954 ORTHO05D003353 1.5e-07 60.1 115 34.8
Phvul.008G149000 Phaseolus vulgaris HOM05D002954 ORTHO05D003353 2.0e-07 59.7 96 34.4
TWI34G1252 Tripterygium wilfordii HOM05D001309 ORTHO05D000385 2.0e-07 59.7 131 33.6
CiPaw.09G181600 Carya illinoinensis HOM05D001309 ORTHO05D000385 2.6e-07 59.3 109 35.8
CiPaw.16G058400 Carya illinoinensis HOM05D001309 ORTHO05D000385 2.6e-07 59.3 109 34.9
A09p31580 Brassica napus HOM05D008309 ORTHO05D010308 4.4e-07 58.5 115 33.9
BraA10t44443Z Brassica rapa HOM05D008309 ORTHO05D010308 4.4e-07 58.5 115 33.9
CSS0015098 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D000385 5.8e-07 58.2 116 33.6
Lj1g0022399 Lotus japonicus HOM05D000107 ORTHO05D000062 5.8e-07 58.2 115 29.6
arahy.Tifrunner.gnm1.ann1.T3L04J Arachis hypogaea HOM05D009662 ORTHO05D003353 9.8e-07 57.4 93 35.5
BolC2t08113H Brassica oleracea HOM05D008309 ORTHO05D010308 9.8e-07 57.4 115 31.3
BolC3t19893H Brassica oleracea HOM05D008309 ORTHO05D010308 9.8e-07 57.4 115 31.3
BolC8t50055H Brassica oleracea HOM05D008309 ORTHO05D010308 9.8e-07 57.4 115 31.3
BraA04t17652Z Brassica rapa HOM05D008309 ORTHO05D010308 9.8e-07 57.4 115 31.3
CSS0011055 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D000385 9.8e-07 57.4 111 34.2
CSS0024690 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D000385 9.8e-07 57.4 111 34.2
CSS0042181 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D000385 9.8e-07 57.4 111 34.2
A01p27270 Brassica napus HOM05D008309 ORTHO05D010308 1.3e-06 57.0 93 40.9
CSS0004946 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D000385 1.3e-06 57.0 111 34.2
CSS0011333 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D000385 1.3e-06 57.0 111 34.2
Lalb_Chr22g0361071 Lupinus albus HOM05D002954 ORTHO05D003353 1.3e-06 57.0 89 32.6
BolC6t36323H Brassica oleracea HOM05D008309 ORTHO05D010308 1.7e-06 56.6 101 38.6
CSS0007321 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D000385 1.7e-06 56.6 111 34.2
CSS0017872 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D000385 1.7e-06 56.6 111 34.2
Nitab4.5_0007595g0020 Nicotiana tabacum HOM05D002954 ORTHO05D003353 1.7e-06 56.6 134 29.1
Psat0s4310g0080 Pisum sativum HOM05D016237 ORTHO05D010767 1.7e-06 56.6 124 29.0
Psat3g162080 Pisum sativum HOM05D000107 ORTHO05D003213 1.7e-06 56.6 56 55.4
COL.COLO4_33862 Corchorus olitorius HOM05D001309 ORTHO05D000385 2.2e-06 56.2 124 31.5
Nn1g02510 Nelumbo nucifera HOM05D001309 ORTHO05D000385 2.2e-06 56.2 110 33.6
C06p11900 Brassica napus HOM05D008309 ORTHO05D010308 2.9e-06 55.8 96 39.6
Solyc10g150115.1 Solanum lycopersicum HOM05D002954 ORTHO05D003353 2.9e-06 55.8 107 29.9
Sopen01g012120 Solanum pennellii HOM05D000002 ORTHO05D000001 2.9e-06 55.8 87 40.2
CSS0000023 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D000385 4.9e-06 55.1 103 35.9
COL.COLO4_06576 Corchorus olitorius HOM05D001309 ORTHO05D000385 6.4e-06 54.7 90 34.4
Peaxi162Scf00417g00048 Petunia axillaris HOM05D002954 ORTHO05D003353 6.4e-06 54.7 85 41.2
VMungo1309G2137 Vigna mungo HOM05D000006 ORTHO05D000001 6.4e-06 54.7 66 40.9
AL1G63190 Arabidopsis lyrata HOM05D008309 ORTHO05D010308 8.3e-06 54.3 131 28.2
arahy.Tifrunner.gnm1.ann1.Y6RTQD Arachis hypogaea HOM05D002954 ORTHO05D010308 8.3e-06 54.3 108 35.2
Nitab4.5_0000008g0430 Nicotiana tabacum HOM05D002954 ORTHO05D015034 8.3e-06 54.3 71 40.8
Psat0s797g0080 Pisum sativum HOM05D002954 ORTHO05D010767 8.3e-06 54.3 124 28.2
TPR.G16180 Trifolium pratense HOM05D002954 ORTHO05D003353 8.3e-06 54.3 89 34.8


User provided reference genes

Program Settings