Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_23697_v3 Cicer arietinum L. HOM05D004215 ORTHO05D005293 2.1e-99 365.9 217 100.0
Psat6g222520 Pisum sativum HOM05D004215 ORTHO05D005293 2.4e-87 325.9 178 91.6
Lj5g0023519 Lotus japonicus HOM05D004215 ORTHO05D005293 1.6e-83 313.2 176 89.2
Medtr1g108710 Medicago truncatula HOM05D004215 ORTHO05D005293 4.7e-83 311.6 178 88.8
Glyma.10G267000 Glycine max HOM05D004215 ORTHO05D005293 6.2e-83 311.2 176 88.6
Phvul.007G035000 Phaseolus vulgaris HOM05D004215 ORTHO05D005293 4.4e-81 305.1 179 86.0
VMungo0720G1296 Vigna mungo HOM05D004215 ORTHO05D005293 8.3e-80 300.8 176 85.8
arahy.Tifrunner.gnm1.ann1.BMT3C6 Arachis hypogaea HOM05D004215 ORTHO05D005293 1.1e-79 300.4 175 84.6
Lalb_Chr06g0165701 Lupinus albus HOM05D004215 ORTHO05D005293 1.4e-79 300.1 176 83.0
arahy.Tifrunner.gnm1.ann1.IPKA5V Arachis hypogaea HOM05D004215 ORTHO05D005293 2.4e-79 299.3 175 84.0
Glyma.20G123700 Glycine max HOM05D004215 ORTHO05D005293 3.2e-79 298.9 176 86.4
Thecc.02G217400 Theobroma cacao HOM05D004215 ORTHO05D005293 1.6e-75 286.6 176 82.4
CANSAT01G2004 Cannabis sativa HOM05D004215 ORTHO05D005293 2.1e-75 286.2 178 80.3
Cfa015796 Carpinus fangiana HOM05D004215 ORTHO05D005293 2.8e-75 285.8 177 82.5
Manes.14G110200 Manihot esculenta HOM05D004215 ORTHO05D005293 3.6e-75 285.4 176 81.2
MD13G1031300 Malus domestica HOM05D004215 ORTHO05D005293 4.7e-75 285.0 176 80.1
Haze_00697 Corylus avellana HOM05D004215 ORTHO05D005293 1.1e-74 283.9 177 81.4
MD16G1033500 Malus domestica HOM05D004215 ORTHO05D005293 1.1e-74 283.9 176 80.1
Ciclev10016124m.g Citrus clementina HOM05D004215 ORTHO05D005293 1.8e-74 283.1 177 79.1
Atru.chr11.354 Acer truncatum HOM05D004215 ORTHO05D005293 4.0e-74 282.0 178 80.3
Cpa.g.sc65.98 Carica papaya HOM05D004215 ORTHO05D005293 4.0e-74 282.0 177 79.7
Eucgr.B02879 Eucalyptus grandis HOM05D004215 ORTHO05D005293 5.2e-74 281.6 180 79.4
Prupe.1G320800 Prunus persica HOM05D004215 ORTHO05D005293 5.2e-74 281.6 176 79.5
TWI79G1401 Tripterygium wilfordii HOM05D004215 ORTHO05D005293 5.2e-74 281.6 178 77.5
Gohir.D05G319000 Gossypium hirsutum HOM05D004215 ORTHO05D005293 6.8e-74 281.2 178 80.3
Gorai.009G341900 Gossypium raimondii HOM05D004215 ORTHO05D005293 6.8e-74 281.2 178 80.3
Dinv16170 Davidia involucrata HOM05D004215 ORTHO05D005293 8.9e-74 280.8 177 80.2
Gohir.A05G317200 Gossypium hirsutum HOM05D004215 ORTHO05D005293 8.9e-74 280.8 179 79.9
MBI16_g21171_MAGBIO Magnolia biondii HOM05D004215 ORTHO05D005293 8.9e-74 280.8 180 78.3
COL.COLO4_15325 Corchorus olitorius HOM05D004215 ORTHO05D005293 2.0e-73 279.6 176 79.5
QL01p002798 Quercus lobata HOM05D004215 ORTHO05D005293 2.0e-73 279.6 179 79.9
Hund25007 Selenicereus undatus HOM05D004215 ORTHO05D005293 2.0e-73 279.6 179 78.2
CSS0048780 Camellia sinensis var. sinensis HOM05D004215 ORTHO05D005293 1.3e-72 276.9 176 79.0
ClCG05G022300 Citrullus lanatus HOM05D004215 ORTHO05D005293 1.3e-72 276.9 175 80.0
RcHm_v2.0_Chr4g0433881 Rosa chinensis HOM05D004215 ORTHO05D005293 1.3e-72 276.9 178 77.5
Potri.010G116500 Populus trichocarpa HOM05D004215 ORTHO05D005293 1.7e-72 276.6 172 80.2
Nitab4.5_0000350g0220 Nicotiana tabacum HOM05D004215 ORTHO05D005293 2.2e-72 276.2 180 76.1
CiPaw.06G014700 Carya illinoinensis HOM05D004215 ORTHO05D005293 3.7e-72 275.4 175 79.4
Potri.008G126700 Populus trichocarpa HOM05D004215 ORTHO05D005293 4.9e-72 275.0 175 78.9
CsaV3_5G034820 Cucumis sativus L. HOM05D004215 ORTHO05D005293 1.1e-71 273.9 175 78.9
BolC8t49328H Brassica oleracea HOM05D004215 ORTHO05D005293 1.4e-71 273.5 180 75.6
THA.LOC104805048 Tarenaya hassleriana HOM05D004215 ORTHO05D005293 1.9e-71 273.1 175 76.6
TWI31G0297 Tripterygium wilfordii HOM05D004215 ORTHO05D005293 1.9e-71 273.1 178 76.4
BcaC07g38770 Brassica carinata HOM05D004215 ORTHO05D005293 2.4e-71 272.7 180 75.0
C08p17030 Brassica napus HOM05D004215 ORTHO05D005293 2.4e-71 272.7 180 75.0
Nn4g24046 Nelumbo nucifera HOM05D004215 ORTHO05D005293 2.4e-71 272.7 176 76.1
Sopen05g004280 Solanum pennellii HOM05D004215 ORTHO05D005293 2.4e-71 272.7 176 76.1
CiPaw.05G246100 Carya illinoinensis HOM05D004215 ORTHO05D005293 3.2e-71 272.3 176 78.4
AUR62014123 Chenopodium quinoa HOM05D004215 ORTHO05D005293 3.2e-71 272.3 177 75.7
MELO3C012293.2 Cucumis melo HOM05D004215 ORTHO05D005293 3.2e-71 272.3 175 78.3
Nitab4.5_0000293g0040 Nicotiana tabacum HOM05D004215 ORTHO05D005293 3.2e-71 272.3 179 74.9
Carub.0001s1491 Capsella rubella HOM05D004215 ORTHO05D005293 4.1e-71 271.9 216 64.8
Duzib251G0621 Durio zibethinus HOM05D004215 ORTHO05D005293 5.4e-71 271.6 175 79.4
BcaB03g13074 Brassica carinata HOM05D004215 ORTHO05D005293 7.1e-71 271.2 220 64.1
FAN17G1658 Fragaria x ananassa HOM05D004215 ORTHO05D005293 9.2e-71 270.8 176 77.8
PGSC0003DMG400030559 Solanum tuberosum HOM05D004215 ORTHO05D005293 9.2e-71 270.8 176 76.1
AL1G27210 Arabidopsis lyrata HOM05D004215 ORTHO05D005293 1.2e-70 270.4 216 64.8
BraA06t24295Z Brassica rapa HOM05D004215 ORTHO05D005293 1.2e-70 270.4 184 72.3
A08p31720 Brassica napus HOM05D004215 ORTHO05D005293 1.6e-70 270.0 180 74.4
BraA08t35094Z Brassica rapa HOM05D004215 ORTHO05D005293 1.6e-70 270.0 180 74.4
Thhalv10008333m.g Eutrema salsugineum HOM05D004215 ORTHO05D005293 1.6e-70 270.0 183 73.8
FAN07G0674 Fragaria x ananassa HOM05D004215 ORTHO05D005293 1.6e-70 270.0 179 76.5
Solyc05g008450.3 Solanum lycopersicum HOM05D004215 ORTHO05D005293 2.1e-70 269.6 176 75.0
Actinidia31987 Actinidia chinensis HOM05D004215 ORTHO05D005293 2.7e-70 269.2 176 74.4
AT1G15140 Arabidopsis thaliana HOM05D004215 ORTHO05D005293 2.7e-70 269.2 169 76.9
FvH4_4g26280 Fragaria vesca HOM05D004215 ORTHO05D005293 2.7e-70 269.2 176 77.3
FAN12G1757 Fragaria x ananassa HOM05D004215 ORTHO05D005293 2.7e-70 269.2 176 77.3
Aa31LG1G20 Aethionema arabicum HOM05D004215 ORTHO05D005293 3.5e-70 268.9 183 73.8
CARHR015680 Cardamine hirsuta HOM05D004215 ORTHO05D005293 3.5e-70 268.9 183 74.3
FAN22G1507 Fragaria x ananassa HOM05D004215 ORTHO05D005293 3.5e-70 268.9 179 76.0
Peaxi162Scf00205g00925 Petunia axillaris HOM05D004215 ORTHO05D005293 3.5e-70 268.9 176 74.4
A06p11150 Brassica napus HOM05D004215 ORTHO05D005293 4.6e-70 268.5 180 72.2
PGR102G1684 Punica granatum HOM05D004215 ORTHO05D005293 4.6e-70 268.5 181 75.1
BcaC05g25445 Brassica carinata HOM05D004215 ORTHO05D005293 1.0e-69 267.3 184 72.3
C05p13270 Brassica napus HOM05D004215 ORTHO05D005293 1.0e-69 267.3 184 72.3
BolC5t30064H Brassica oleracea HOM05D004215 ORTHO05D005293 1.0e-69 267.3 184 72.3
FAN12G4108 Fragaria x ananassa HOM05D004215 ORTHO05D005293 1.0e-69 267.3 176 76.7
Actinidia14939 Actinidia chinensis HOM05D004215 ORTHO05D005293 1.3e-69 266.9 179 72.6
Actinidia36693 Actinidia chinensis HOM05D004215 ORTHO05D005293 1.3e-69 266.9 179 73.7
Sed0020304 Sechium edule HOM05D004215 ORTHO05D005293 1.3e-69 266.9 175 74.9
CSS0000916 Camellia sinensis var. sinensis HOM05D004215 ORTHO05D005293 3.9e-69 265.4 166 77.7
Lalb_Chr17g0338761 Lupinus albus HOM05D004215 ORTHO05D005293 3.9e-69 265.4 176 75.6
Sabra10G0086200 Salix brachista HOM05D004215 ORTHO05D005293 3.9e-69 265.4 168 78.6
Sabra10G0087900 Salix brachista HOM05D004215 ORTHO05D005293 3.9e-69 265.4 168 78.6
Lsat_1_v5_gn_8_41661 Lactuca sativa HOM05D004215 ORTHO05D005293 1.1e-68 263.8 178 75.3
TAR629G2922 Trochodendron aralioides HOM05D004215 ORTHO05D005293 1.5e-68 263.5 205 66.3
AUR62002761 Chenopodium quinoa HOM05D004215 ORTHO05D005293 1.9e-68 263.1 171 76.0
Actinidia15237 Actinidia chinensis HOM05D004215 ORTHO05D005293 2.5e-68 262.7 167 76.0
Lj3A876G45 Lonicera japonica HOM05D004215 ORTHO05D005293 2.1e-67 259.6 175 72.0
Oeu004319.1 Olea europaea HOM05D004215 ORTHO05D005293 2.1e-67 259.6 177 74.6
HanXRQChr15g0466211 Helianthus annuus HOM05D004215 ORTHO05D005293 3.6e-67 258.8 180 72.8
MSTRG.13568 Avicennia marina HOM05D004215 ORTHO05D005293 8.1e-67 257.7 177 72.9
Migut.L00828 Erythranthe guttata HOM05D004215 ORTHO05D005293 1.8e-66 256.5 177 70.6
Rhsim09G0069000 Rhododendron simsii HOM05D004215 ORTHO05D005293 2.3e-66 256.1 168 74.4
ECA233G2791 Erigeron canadensis HOM05D004215 ORTHO05D005293 4.0e-66 255.4 178 73.0
CAN.G1489.9 Capsicum annuum HOM05D004215 ORTHO05D005293 5.2e-66 255.0 175 70.9
Sed0017516 Sechium edule HOM05D004215 ORTHO05D005293 5.2e-66 255.0 176 74.4
Sc14g0007220 Simmondsia chinensis HOM05D004215 ORTHO05D005293 6.8e-66 254.6 173 71.7
DCAR_023619 Daucus carota HOM05D004215 ORTHO05D005293 1.2e-65 253.8 176 70.5
EL10Ac6g14267 Beta vulgaris HOM05D004215 ORTHO05D005293 3.4e-65 252.3 182 72.0
Migut.E00397 Erythranthe guttata HOM05D004215 ORTHO05D005293 1.7e-64 250.0 177 71.2
Migut.L00651 Erythranthe guttata HOM05D004215 ORTHO05D005293 1.7e-64 250.0 170 70.6
SalBow8G1964 Salvia bowleyana HOM05D004215 ORTHO05D005293 7.1e-63 244.6 193 67.9
unitig_699.g19481 Utricularia gibba HOM05D004215 ORTHO05D005293 7.1e-63 244.6 177 69.5
MSTRG.2195 Avicennia marina HOM05D004215 ORTHO05D005293 2.1e-62 243.0 175 69.7
BcaB02g06582 Brassica carinata HOM05D004215 ORTHO05D005293 2.7e-62 242.7 155 74.8
CDE06G1149 Ceratophyllum demersum HOM05D004215 ORTHO05D005293 7.8e-62 241.1 176 70.5
SHI16315 Sapria himalayana HOM05D004215 ORTHO05D005293 7.8e-62 241.1 175 69.1
SGA_v2.0_scaffold14G06920 Striga asiatica HOM05D004215 ORTHO05D005293 1.3e-61 240.4 187 66.3
PSO478G0614 Papaver somniferum HOM05D004215 ORTHO05D005293 2.3e-61 239.6 176 65.9
PSO017G7108 Papaver somniferum HOM05D004215 ORTHO05D005293 6.6e-61 238.0 176 65.3
PGR119G1032 Punica granatum HOM05D004215 ORTHO05D005293 6.6e-61 238.0 176 70.5
HPP92_021849 Vanilla planifolia HOM05D004215 ORTHO05D005293 3.3e-60 235.7 184 66.8
SGA_v2.0_scaffold50G18535 Striga asiatica HOM05D004215 ORTHO05D005293 2.1e-59 233.0 200 61.5
Aqoxy3G00166 Aquilegia oxysepala HOM05D004215 ORTHO05D005293 4.7e-59 231.9 176 68.2
Sp1g13480 Schrenkiella parvula HOM05D004215 ORTHO05D005293 1.2e-54 217.2 216 54.6
Hma1.2p1_0114F.1_g055430 Hydrangea macrophylla HOM05D004215 ORTHO05D005293 1.6e-54 216.9 181 64.1
DCAR_030188 Daucus carota HOM05D004215 ORTHO05D005293 1.3e-53 213.8 175 64.6
ATR0691G234 Amborella trichopoda HOM05D004215 ORTHO05D005293 1.9e-52 209.9 177 63.3
Os02g0328300 Oryza sativa ssp. japonica HOM05D004215 ORTHO05D005293 9.6e-52 207.6 180 62.2
SEGI_29541 Sequoiadendron giganteum HOM05D004215 ORTHO05D005293 6.2e-51 204.9 174 58.6
SMO174G0012 Selaginella moellendorffii HOM05D004215 ORTHO05D005293 5.8e-49 198.4 172 59.3
Mapoly0004s0030 Marchantia polymorpha HOM05D004215 ORTHO05D005293 1.3e-48 197.2 177 57.6
AagrBONN_evm.TU.Sc2ySwM_228.3165 Anthoceros agrestis HOM05D004215 ORTHO05D005293 1.4e-47 193.7 176 56.2
vmacro01428 Vaccinium macrocarpon HOM05D004215 ORTHO05D005293 1.4e-47 193.7 129 71.3
Actinidia33607 Actinidia chinensis HOM05D004215 ORTHO05D005293 1.2e-46 190.7 181 53.6
Pp3c16_22650 Physcomitrium patens HOM05D004215 ORTHO05D005293 1.1e-44 184.1 178 55.6
Zm00001eb241500 Zea mays HOM05D004215 ORTHO05D005293 1.9e-44 183.3 182 54.9
BolC5t33841H Brassica oleracea HOM05D004215 ORTHO05D005293 5.6e-44 181.8 135 68.9
CDE04G0818 Ceratophyllum demersum HOM05D004215 ORTHO05D005293 1.5e-41 173.7 176 54.0
Zm00001eb121490 Zea mays HOM05D004215 ORTHO05D005293 1.5e-36 157.1 178 51.7
arahy.Tifrunner.gnm1.ann1.B59VJ6 Arachis hypogaea HOM05D004215 ORTHO05D005293 4.3e-36 155.6 145 57.9
Os01g0120600 Oryza sativa ssp. japonica HOM05D004215 ORTHO05D005293 1.8e-29 133.7 135 53.3
Cre01.g000350 Chlamydomonas reinhardtii HOM05D004215 ORTHO05D005293 5.3e-26 122.1 157 49.0
BolC2t11573H Brassica oleracea HOM05D004215 ORTHO05D005293 1.2e-25 120.9 106 60.4
RcHm_v2.0_Chr2g0123901 Rosa chinensis HOM05D004215 ORTHO05D005293 7.6e-25 118.2 85 65.9
Actinidia33606 Actinidia chinensis HOM05D004215 ORTHO05D005293 2.5e-23 113.2 164 41.5
GSVIVG01011796001 Vitis vinifera HOM05D004215 ORTHO05D005293 9.3e-23 111.3 62 85.5
Actinidia16703 Actinidia chinensis HOM05D004215 ORTHO05D005293 1.2e-22 110.9 169 42.6
Actinidia33626 Actinidia chinensis HOM05D004215 ORTHO05D005293 3.6e-22 109.4 123 52.8
MCO13G089 Micromonas commoda HOM05D004215 ORTHO05D005293 5.1e-21 105.5 149 45.0
Cc11_g09170 Coffea canephora HOM05D004215 ORTHO05D005293 8.7e-21 104.8 62 79.0
BcaB07g30283 Brassica carinata HOM05D004215 ORTHO05D005293 2.5e-20 103.2 72 66.7
C02p55250 Brassica napus HOM05D004215 ORTHO05D005293 2.5e-20 103.2 143 44.8
Lj6A750T89 Lonicera japonica HOM05D004215 ORTHO05D005293 2.5e-20 103.2 62 75.8
TPR.G10991 Trifolium pratense HOM05D004215 ORTHO05D005293 2.5e-20 103.2 50 100.0
CBR_g23714 Chara braunii HOM05D004215 ORTHO05D005293 2.2e-19 100.1 175 38.9
BcaC03g17546 Brassica carinata HOM05D004215 ORTHO05D005293 2.0e-17 93.6 82 57.3
RcHm_v2.0_Chr6g0284911 Rosa chinensis HOM05D004215 ORTHO05D005293 1.7e-16 90.5 63 66.7
SMO201G0141 Selaginella moellendorffii HOM05D028400 ORTHO05D005293 2.1e-14 83.6 68 58.8
RcHm_v2.0_Chr6g0253871 Rosa chinensis HOM05D004215 ORTHO05D005293 2.7e-14 83.2 62 64.5
TPR.G4918 Trifolium pratense HOM05D004215 ORTHO05D005293 8.2e-11 71.6 34 100.0
vmacro01429 Vaccinium macrocarpon HOM05D004215 ORTHO05D005293 7.7e-09 65.1 34 91.2
Mapoly0118s0023 Marchantia polymorpha HOM05D004215 ORTHO05D018306 7.2e-07 58.5 193 26.4
C08p45130 Brassica napus HOM05D004215 ORTHO05D005293 2.7e-06 56.6 38 71.1
BolC8t52061H Brassica oleracea HOM05D004215 ORTHO05D005293 2.7e-06 56.6 38 71.1


User provided reference genes

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