Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_23673_v3 Cicer arietinum L. HOM05D004717 ORTHO05D005636 3.0e-99 365.2 180 100.0
Medtr6g075160 Medicago truncatula HOM05D004717 ORTHO05D005636 2.0e-31 139.8 144 53.5
Psat1g123480 Pisum sativum HOM05D004717 ORTHO05D005636 2.7e-31 139.4 144 54.2
TPR.G9035 Trifolium pratense HOM05D004717 ORTHO05D005636 2.9e-30 136.0 120 60.8
TPR.G28016 Trifolium pratense HOM05D004717 ORTHO05D005636 3.8e-30 135.6 120 59.2
Lj5g0015714 Lotus japonicus HOM05D004717 ORTHO05D005636 2.6e-26 122.9 120 54.2
Lj2g0014996 Lotus japonicus HOM05D004717 ORTHO05D005636 6.3e-25 118.2 120 51.7
Carub.0006s2109 Capsella rubella HOM05D004717 ORTHO05D005636 1.1e-24 117.5 144 41.7
AL6G34580 Arabidopsis lyrata HOM05D004717 ORTHO05D005636 3.1e-24 115.9 134 43.3
Lj3g0022258 Lotus japonicus HOM05D004717 ORTHO05D005636 4.1e-24 115.5 120 52.5
AT5G23320 Arabidopsis thaliana HOM05D004717 ORTHO05D005636 5.4e-24 115.2 134 43.3
CiPaw.06G062200 Carya illinoinensis HOM05D004717 ORTHO05D005636 7.0e-24 114.8 138 42.8
CARHR190220 Cardamine hirsuta HOM05D004717 ORTHO05D005636 9.2e-24 114.4 144 41.7
AL6G18770 Arabidopsis lyrata HOM05D004717 ORTHO05D005636 1.2e-23 114.0 134 44.8
A03p03770 Brassica napus HOM05D004717 ORTHO05D005636 1.2e-23 114.0 134 46.3
BraA03t09724Z Brassica rapa HOM05D004717 ORTHO05D005636 1.2e-23 114.0 134 46.3
MD16G1003900 Malus domestica HOM05D004717 ORTHO05D005636 1.2e-23 114.0 144 43.1
Atru.chr11.1095 Acer truncatum HOM05D004717 ORTHO05D005636 2.7e-23 112.8 155 40.0
Aa31LG11G2780 Aethionema arabicum HOM05D004717 ORTHO05D005636 3.5e-23 112.5 134 43.3
ClCG06G000120 Citrullus lanatus HOM05D004717 ORTHO05D005636 3.5e-23 112.5 120 47.5
Phvul.004G144800 Phaseolus vulgaris HOM05D004717 ORTHO05D005636 5.9e-23 111.7 144 41.7
EL10Ac7g17906 Beta vulgaris HOM05D004717 ORTHO05D005636 7.8e-23 111.3 138 46.4
CiPaw.05G171500 Carya illinoinensis HOM05D004717 ORTHO05D005636 7.8e-23 111.3 137 45.3
RcHm_v2.0_Chr4g0446911 Rosa chinensis HOM05D004717 ORTHO05D005636 7.8e-23 111.3 137 43.8
CARHR204740 Cardamine hirsuta HOM05D004717 ORTHO05D005636 1.0e-22 110.9 134 44.0
Glyma.16G218800 Glycine max HOM05D004717 ORTHO05D005636 1.0e-22 110.9 120 47.5
THA.LOC104800704 Tarenaya hassleriana HOM05D004717 ORTHO05D005636 1.0e-22 110.9 130 46.2
GSVIVG01026135001 Vitis vinifera HOM05D004717 ORTHO05D005636 1.0e-22 110.9 120 50.0
C03p04250 Brassica napus HOM05D004717 ORTHO05D005636 1.3e-22 110.5 120 47.5
BolC3t12957H Brassica oleracea HOM05D004717 ORTHO05D005636 1.3e-22 110.5 120 47.5
Cpa.g.sc59.26 Carica papaya HOM05D004717 ORTHO05D005636 1.3e-22 110.5 120 48.3
AUR62011721 Chenopodium quinoa HOM05D004717 ORTHO05D005636 1.3e-22 110.5 120 49.2
Manes.08G039100 Manihot esculenta HOM05D004717 ORTHO05D005636 1.3e-22 110.5 137 45.3
Thecc.02G155400 Theobroma cacao HOM05D004717 ORTHO05D005636 1.3e-22 110.5 120 46.7
CiPaw.05G171400 Carya illinoinensis HOM05D004717 ORTHO05D005636 1.7e-22 110.2 137 44.5
AUR62012906 Chenopodium quinoa HOM05D004717 ORTHO05D005636 1.7e-22 110.2 120 50.0
Gohir.A12G132100 Gossypium hirsutum HOM05D004717 ORTHO05D005636 1.7e-22 110.2 137 44.5
Gohir.D12G135700 Gossypium hirsutum HOM05D004717 ORTHO05D005636 1.7e-22 110.2 137 45.3
Gorai.008G146900 Gossypium raimondii HOM05D004717 ORTHO05D005636 1.7e-22 110.2 137 45.3
Potri.007G074500 Populus trichocarpa HOM05D004717 ORTHO05D005636 2.3e-22 109.8 137 43.1
arahy.Tifrunner.gnm1.ann1.TS1LPS Arachis hypogaea HOM05D004717 ORTHO05D005636 2.9e-22 109.4 120 50.0
Duzib132G0983 Durio zibethinus HOM05D004717 ORTHO05D005636 2.9e-22 109.4 120 45.8
Aa31LG3G18230 Aethionema arabicum HOM05D006471 ORTHO05D005636 3.8e-22 109.0 134 43.3
AT5G08335 Arabidopsis thaliana HOM05D004717 ORTHO05D005636 3.8e-22 109.0 134 42.5
Lalb_Chr16g0386851 Lupinus albus HOM05D004717 ORTHO05D005636 3.8e-22 109.0 144 43.1
QL04p036080 Quercus lobata HOM05D004717 ORTHO05D005636 3.8e-22 109.0 138 43.5
QL04p036464 Quercus lobata HOM05D004717 ORTHO05D005636 3.8e-22 109.0 138 43.5
TWI74G1267 Tripterygium wilfordii HOM05D004717 ORTHO05D005636 3.8e-22 109.0 120 46.7
Haze_11783 Corylus avellana HOM05D004717 ORTHO05D005636 5.0e-22 108.6 120 47.5
arahy.Tifrunner.gnm1.ann1.8YZR55 Arachis hypogaea HOM05D004717 ORTHO05D005636 6.6e-22 108.2 201 37.3
unitig_8.g3169 Utricularia gibba HOM05D004717 ORTHO05D005636 6.6e-22 108.2 120 48.3
BcaB01g05612 Brassica carinata HOM05D004717 ORTHO05D005636 8.6e-22 107.8 134 43.3
DCAR_027608 Daucus carota HOM05D004717 ORTHO05D005636 8.6e-22 107.8 137 43.1
Rhsim02G0075200 Rhododendron simsii HOM05D004717 ORTHO05D005636 8.6e-22 107.8 120 48.3
Sabra07G0063200 Salix brachista HOM05D004717 ORTHO05D005636 8.6e-22 107.8 137 43.1
MSTRG.7889 Avicennia marina HOM05D004717 ORTHO05D005636 1.1e-21 107.5 120 45.0
FAN12G1282 Fragaria x ananassa HOM05D004717 ORTHO05D005636 1.1e-21 107.5 137 42.3
Prupe.1G348900 Prunus persica HOM05D004717 ORTHO05D005636 1.1e-21 107.5 120 45.8
Oeu003437.1 Olea europaea HOM05D004717 ORTHO05D005636 1.9e-21 106.7 120 47.5
Sed0025396 Sechium edule HOM05D004717 ORTHO05D005636 1.9e-21 106.7 120 45.8
Sed0013821 Sechium edule HOM05D004717 ORTHO05D005636 2.5e-21 106.3 120 44.2
CANSAT11G2572 Cannabis sativa HOM05D004717 ORTHO05D005636 3.3e-21 105.9 137 43.8
Cc11_g03470 Coffea canephora HOM05D004717 ORTHO05D005636 3.3e-21 105.9 120 46.7
MELO3C022525.2 Cucumis melo HOM05D004717 ORTHO05D005636 3.3e-21 105.9 120 45.0
CsaV3_6G005870 Cucumis sativus L. HOM05D004717 ORTHO05D005636 3.3e-21 105.9 120 45.0
MD13G1003500 Malus domestica HOM05D004717 ORTHO05D005636 3.3e-21 105.9 129 43.4
VMungo0464G0417 Vigna mungo HOM05D004717 ORTHO05D005636 3.3e-21 105.9 120 45.8
Eucgr.G02601 Eucalyptus grandis HOM05D004717 ORTHO05D005636 4.3e-21 105.5 138 42.0
Ah.01g024100 Amaranthus hybridus HOM05D004717 ORTHO05D005636 5.6e-21 105.1 120 46.7
CSS0046676 Camellia sinensis var. sinensis HOM05D004717 ORTHO05D005636 5.6e-21 105.1 120 47.5
Duzib106G0072 Durio zibethinus HOM05D004717 ORTHO05D005636 5.6e-21 105.1 129 46.5
Migut.L01402 Erythranthe guttata HOM05D004717 ORTHO05D005636 5.6e-21 105.1 120 45.8
Lj6P708T54 Lonicera japonica HOM05D004717 ORTHO05D005636 5.6e-21 105.1 120 45.8
EL10Ac9g21225 Beta vulgaris HOM05D004717 ORTHO05D005636 7.3e-21 104.8 127 44.1
vmacro15638 Vaccinium macrocarpon HOM05D004717 ORTHO05D005636 7.3e-21 104.8 120 46.7
GSVIVG01038782001 Vitis vinifera HOM05D004717 ORTHO05D005636 7.3e-21 104.8 120 48.3
Dinv02673 Davidia involucrata HOM05D004717 ORTHO05D005636 9.5e-21 104.4 137 43.1
Nitab4.5_0004808g0010 Nicotiana tabacum HOM05D004717 ORTHO05D005636 1.2e-20 104.0 120 45.8
AUR62001133 Chenopodium quinoa HOM05D004717 ORTHO05D005636 1.6e-20 103.6 120 45.0
Aqoxy6G00094 Aquilegia oxysepala HOM05D004717 ORTHO05D005636 2.1e-20 103.2 120 47.5
Lj6P714T12 Lonicera japonica HOM05D004717 ORTHO05D005636 2.1e-20 103.2 120 44.2
Nitab4.5_0004979g0110 Nicotiana tabacum HOM05D004717 ORTHO05D005636 2.1e-20 103.2 120 45.8
Peaxi162Scf00681g00024 Petunia axillaris HOM05D004717 ORTHO05D005636 2.1e-20 103.2 120 45.8
Nn2g12497 Nelumbo nucifera HOM05D004717 ORTHO05D005636 2.8e-20 102.8 137 43.8
Ciclev10016775m.g Citrus clementina HOM05D004717 ORTHO05D005636 3.6e-20 102.4 120 45.0
HanXRQChr08g0237151 Helianthus annuus HOM05D004717 ORTHO05D005636 3.6e-20 102.4 120 47.5
PGR142G2311 Punica granatum HOM05D004717 ORTHO05D005636 3.6e-20 102.4 120 43.3
Solyc04g009010.2 Solanum lycopersicum HOM05D004717 ORTHO05D005636 3.6e-20 102.4 120 45.0
PGSC0003DMG400011510 Solanum tuberosum HOM05D004717 ORTHO05D005636 3.6e-20 102.4 120 45.0
Actinidia35903 Actinidia chinensis HOM05D004717 ORTHO05D005636 4.7e-20 102.1 120 47.5
Hma1.2p1_0513F.1_g169470 Hydrangea macrophylla HOM05D004717 ORTHO05D005636 4.7e-20 102.1 120 45.8
SGA_v2.0_scaffold8G04231 Striga asiatica HOM05D004717 ORTHO05D005636 4.7e-20 102.1 120 44.2
PSO782G0831 Papaver somniferum HOM05D004717 ORTHO05D005636 6.1e-20 101.7 120 42.5
SGA_v2.0_scaffold62G21625 Striga asiatica HOM05D004717 ORTHO05D005636 6.1e-20 101.7 120 44.2
DCAR_023472 Daucus carota HOM05D004717 ORTHO05D005636 8.0e-20 101.3 137 43.1
Lsat_1_v5_gn_9_25720 Lactuca sativa HOM05D004717 ORTHO05D005636 1.0e-19 100.9 120 42.5
Potri.005G089500 Populus trichocarpa HOM05D004717 ORTHO05D005636 1.8e-19 100.1 137 40.1
CDE02G0493 Ceratophyllum demersum HOM05D004717 ORTHO05D005636 2.3e-19 99.8 120 45.0
Eucgr.G02666 Eucalyptus grandis HOM05D004717 ORTHO05D005636 2.3e-19 99.8 138 39.1
CAN.G274.13 Capsicum annuum HOM05D004717 ORTHO05D005636 3.0e-19 99.4 120 45.0
PGR142G4258 Punica granatum HOM05D004717 ORTHO05D005636 3.0e-19 99.4 137 38.7
Sc17g0002110 Simmondsia chinensis HOM05D004717 ORTHO05D005636 4.0e-19 99.0 127 41.7
Duzib177G0848 Durio zibethinus HOM05D004717 ORTHO05D005636 6.8e-19 98.2 120 44.2
GSVIVG01038778001 Vitis vinifera HOM05D004717 ORTHO05D005636 1.2e-18 97.4 134 44.8
Ah.08g214600 Amaranthus hybridus HOM05D004717 ORTHO05D005636 1.5e-18 97.1 137 41.6
Sc08g0003750 Simmondsia chinensis HOM05D004717 ORTHO05D005636 2.0e-18 96.7 134 41.8
ATR0580G192 Amborella trichopoda HOM05D004717 ORTHO05D005636 3.4e-18 95.9 120 43.3
MBI14_g08135_MAGBIO Magnolia biondii HOM05D004717 ORTHO05D005636 3.4e-18 95.9 144 39.6
Oeu033041.1 Olea europaea HOM05D004717 ORTHO05D005636 5.7e-18 95.1 120 43.3
Migut.E00157 Erythranthe guttata HOM05D004717 ORTHO05D005636 7.5e-18 94.7 120 42.5
ECA247G4036 Erigeron canadensis HOM05D004717 ORTHO05D005636 1.3e-17 94.0 120 43.3
SalBow2G2042 Salvia bowleyana HOM05D004717 ORTHO05D005636 1.7e-17 93.6 95 49.5
Sp6g34610 Schrenkiella parvula HOM05D004717 ORTHO05D005636 1.1e-16 90.9 120 40.8
Sopen04g004190 Solanum pennellii HOM05D004717 ORTHO05D005636 1.8e-16 90.1 108 44.4
Lsat_1_v5_gn_5_170960 Lactuca sativa HOM05D004717 ORTHO05D005636 2.4e-16 89.7 120 37.5
HPP92_018371 Vanilla planifolia HOM05D004717 ORTHO05D005636 7.0e-16 88.2 134 37.3
SHI07248 Sapria himalayana HOM05D004717 ORTHO05D005636 9.2e-16 87.8 135 39.3
Pp3c3_35430 Physcomitrium patens HOM05D004717 ORTHO05D005636 7.8e-15 84.7 125 36.0
Hund05579 Selenicereus undatus HOM05D004717 ORTHO05D005636 1.3e-14 84.0 92 46.7
Rhsim02G0074800 Rhododendron simsii HOM05D004717 ORTHO05D005636 3.0e-14 82.8 124 38.7
Mapoly0062s0094 Marchantia polymorpha HOM05D004717 ORTHO05D005636 8.6e-14 81.3 136 38.2
SMO117G0139 Selaginella moellendorffii HOM05D004717 ORTHO05D005636 1.5e-13 80.5 120 40.0
HanXRQChr01g0011051 Helianthus annuus HOM05D004717 ORTHO05D005636 3.3e-13 79.3 127 34.6
Lalb_Chr24g0398391 Lupinus albus HOM05D004717 ORTHO05D005636 2.1e-12 76.6 73 53.4
TAR381G0283 Trochodendron aralioides HOM05D004717 ORTHO05D005636 1.8e-11 73.6 83 49.4
Os04g0602900 Oryza sativa ssp. japonica HOM05D004717 ORTHO05D005636 3.1e-11 72.8 68 50.0
Carub.0006s0723 Capsella rubella HOM05D004717 ORTHO05D005636 8.9e-11 71.2 62 51.6
PSO170G2864 Papaver somniferum HOM05D004717 ORTHO05D005636 1.2e-10 70.9 97 37.1
COL.COLO4_20086 Corchorus olitorius HOM05D004717 ORTHO05D005636 1.5e-10 70.5 92 43.5
Lj3P847T27 Lonicera japonica HOM05D004717 ORTHO05D005636 2.0e-10 70.1 71 50.7
Zm00001eb144100 Zea mays HOM05D004717 ORTHO05D005636 2.6e-10 69.7 66 48.5
Thhalv10014725m.g Eutrema salsugineum HOM05D004717 ORTHO05D005636 4.4e-10 68.9 62 50.0
HanXRQChr17g0556721 Helianthus annuus HOM05D004717 ORTHO05D005636 1.7e-09 67.0 51 58.8
Gohir.A11G227800 Gossypium hirsutum HOM05D004717 ORTHO05D005636 3.7e-09 65.9 65 47.7
Gohir.D11G240300 Gossypium hirsutum HOM05D004717 ORTHO05D005636 6.4e-09 65.1 65 47.7
Gorai.007G253700 Gossypium raimondii HOM05D004717 ORTHO05D005636 6.4e-09 65.1 65 47.7
Glyma.09G169200 Glycine max HOM05D004717 ORTHO05D005636 8.3e-09 64.7 147 32.7
Thecc.05G241200 Theobroma cacao HOM05D004717 ORTHO05D005636 1.4e-08 63.9 57 54.4
CDE04G3142 Ceratophyllum demersum HOM05D004717 ORTHO05D005636 2.0e-07 60.1 49 53.1
C07p44230 Brassica napus HOM05D006667 ORTHO05D008387 1.3e-06 57.4 44 63.6
Eucgr.D01405 Eucalyptus grandis HOM05D004717 ORTHO05D005636 3.0e-06 56.2 53 39.6
SEGI_39005 Sequoiadendron giganteum HOM05D004717 ORTHO05D005636 5.0e-06 55.5 36 66.7


User provided reference genes

Program Settings