Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_23643_v3 Cicer arietinum L. HOM05D003942 ORTHO05D004527 2.1e-228 795.4 420 100.0
Psat4g154400 Pisum sativum HOM05D003942 ORTHO05D004527 1.5e-181 639.8 422 77.5
Lj3g0006137 Lotus japonicus HOM05D003942 ORTHO05D004527 7.8e-167 590.9 419 74.0
Medtr8g031000 Medicago truncatula HOM05D003942 ORTHO05D004527 8.1e-164 580.9 335 87.8
TPR.G15979 Trifolium pratense HOM05D003942 ORTHO05D004527 1.4e-163 580.1 335 87.8
Glyma.07G071900 Glycine max HOM05D003942 ORTHO05D004527 7.5e-162 574.3 418 72.2
Glyma.03G010800 Glycine max HOM05D003942 ORTHO05D004527 1.7e-161 573.2 420 71.4
Phvul.010G097300 Phaseolus vulgaris HOM05D003942 ORTHO05D004527 3.5e-159 565.5 420 69.8
VMungo0331G0006 Vigna mungo HOM05D003942 ORTHO05D004527 6.6e-158 561.2 420 69.3
Lalb_Chr04g0256871 Lupinus albus HOM05D003942 ORTHO05D004527 8.9e-155 550.8 358 78.2
Lalb_Chr03g0038211 Lupinus albus HOM05D003942 ORTHO05D004527 9.2e-152 540.8 417 67.9
arahy.Tifrunner.gnm1.ann1.2H0UDK Arachis hypogaea HOM05D003942 ORTHO05D004527 3.6e-148 528.9 430 65.3
arahy.Tifrunner.gnm1.ann1.Q5YAPI Arachis hypogaea HOM05D003942 ORTHO05D004527 3.6e-148 528.9 430 65.6
Dinv32469 Davidia involucrata HOM05D003942 ORTHO05D004527 3.4e-146 522.3 363 71.9
Gorai.007G098800 Gossypium raimondii HOM05D003942 ORTHO05D004527 4.4e-146 521.9 361 72.6
Gohir.A11G088200 Gossypium hirsutum HOM05D003942 ORTHO05D004527 2.2e-145 519.6 361 72.3
Cfa003938 Carpinus fangiana HOM05D003942 ORTHO05D004527 3.8e-145 518.8 423 64.3
TAR629G1832 Trochodendron aralioides HOM05D003942 ORTHO05D004527 3.8e-145 518.8 355 71.8
Thecc.01G360500 Theobroma cacao HOM05D003942 ORTHO05D004527 1.4e-144 516.9 361 72.3
CiPaw.01G059900 Carya illinoinensis HOM05D003942 ORTHO05D004527 2.4e-144 516.2 425 64.0
CANSAT56G2580 Cannabis sativa HOM05D003942 ORTHO05D004527 7.1e-144 514.6 356 71.3
QL08p049021 Quercus lobata HOM05D003942 ORTHO05D004527 1.2e-143 513.8 421 63.9
Rhsim07G0016400 Rhododendron simsii HOM05D003942 ORTHO05D004527 2.7e-143 512.7 355 71.0
TAR375G0209 Trochodendron aralioides HOM05D003942 ORTHO05D004527 6.0e-143 511.5 355 71.5
CSS0049620 Camellia sinensis var. sinensis HOM05D003942 ORTHO05D004527 1.0e-142 510.8 422 62.8
CSS0041241 Camellia sinensis var. sinensis HOM05D003942 ORTHO05D004527 1.3e-142 510.4 422 62.8
Atru.chr5.464 Acer truncatum HOM05D003942 ORTHO05D004527 2.3e-142 509.6 419 63.2
Duzib133G0298 Durio zibethinus HOM05D003942 ORTHO05D004527 3.9e-142 508.8 418 64.6
Actinidia10022 Actinidia chinensis HOM05D003942 ORTHO05D004527 5.1e-142 508.4 355 69.3
CiPaw.02G030000 Carya illinoinensis HOM05D003942 ORTHO05D004527 1.1e-141 507.3 354 72.0
COL.COLO4_12700 Corchorus olitorius HOM05D003942 ORTHO05D004527 1.9e-141 506.5 354 71.8
Cpa.g.sc18.243 Carica papaya HOM05D003942 ORTHO05D004527 3.3e-141 505.8 420 63.8
TWI23G1005 Tripterygium wilfordii HOM05D003942 ORTHO05D004527 3.3e-141 505.8 412 65.3
Prupe.2G168100 Prunus persica HOM05D003942 ORTHO05D004527 2.8e-140 502.7 422 63.3
Sabra14G0060100 Salix brachista HOM05D003942 ORTHO05D004527 1.8e-139 500.0 418 62.7
MD07G1139000 Malus domestica HOM05D003942 ORTHO05D004527 2.4e-139 499.6 355 69.0
MBI18_g25515_MAGBIO Magnolia biondii HOM05D003942 ORTHO05D004527 3.1e-139 499.2 418 62.2
Manes.05G036000 Manihot esculenta HOM05D003942 ORTHO05D004527 3.1e-139 499.2 362 69.1
Potri.014G082900 Populus trichocarpa HOM05D003942 ORTHO05D004527 1.2e-138 497.3 420 63.1
CAN.G399.13 Capsicum annuum HOM05D003942 ORTHO05D004527 2.2e-137 493.0 356 69.1
Peaxi162Scf00191g01422 Petunia axillaris HOM05D003942 ORTHO05D004527 2.2e-137 493.0 355 69.3
Ciclev10020374m.g Citrus clementina HOM05D003942 ORTHO05D004527 3.8e-137 492.3 355 68.7
CDE09G0298 Ceratophyllum demersum HOM05D003942 ORTHO05D004527 1.1e-136 490.7 360 66.9
PGSC0003DMG400021644 Solanum tuberosum HOM05D003942 ORTHO05D004527 1.9e-136 490.0 357 68.6
MD01G1057600 Malus domestica HOM05D003942 ORTHO05D004527 2.4e-136 489.6 415 61.2
FAN10G4090 Fragaria x ananassa HOM05D003942 ORTHO05D004527 3.2e-136 489.2 358 66.2
THA.LOC104817290 Tarenaya hassleriana HOM05D003942 ORTHO05D004527 3.2e-136 489.2 349 68.5
FAN01G0250 Fragaria x ananassa HOM05D003942 ORTHO05D004527 5.4e-136 488.4 358 66.2
Aqoxy5G04009 Aquilegia oxysepala HOM05D003942 ORTHO05D004527 9.3e-136 487.6 421 61.5
GSVIVG01026895001 Vitis vinifera HOM05D003942 ORTHO05D004527 1.6e-135 486.9 334 71.3
FAN06G2309 Fragaria x ananassa HOM05D003942 ORTHO05D004527 2.1e-135 486.5 358 65.9
RcHm_v2.0_Chr1g0355071 Rosa chinensis HOM05D003942 ORTHO05D004527 2.1e-135 486.5 418 59.6
TWI59G0555 Tripterygium wilfordii HOM05D003942 ORTHO05D004527 2.1e-135 486.5 412 61.2
Nitab4.5_0008050g0040 Nicotiana tabacum HOM05D003942 ORTHO05D004527 3.5e-135 485.7 354 68.9
PGR042G2566 Punica granatum HOM05D003942 ORTHO05D004527 4.6e-135 485.3 359 67.4
MSTRG.4859 Avicennia marina HOM05D003942 ORTHO05D004527 6.0e-135 485.0 354 66.4
BcaC07g40631 Brassica carinata HOM05D003942 ORTHO05D004527 6.0e-135 485.0 359 66.6
A04p01160 Brassica napus HOM05D003942 ORTHO05D004527 6.0e-135 485.0 356 66.6
BraA04t15833Z Brassica rapa HOM05D003942 ORTHO05D004527 6.0e-135 485.0 356 66.6
FvH4_7g14170 Fragaria vesca HOM05D003942 ORTHO05D004527 6.0e-135 485.0 358 65.6
Solyc05g049900.3 Solanum lycopersicum HOM05D003942 ORTHO05D004527 6.0e-135 485.0 357 67.5
Sopen05g028240 Solanum pennellii HOM05D003942 ORTHO05D004527 6.0e-135 485.0 357 67.5
Cc02_g37870 Coffea canephora HOM05D003942 ORTHO05D004527 1.8e-134 483.4 352 68.5
SGA_v2.0_scaffold43G16422 Striga asiatica HOM05D003942 ORTHO05D004527 1.8e-134 483.4 354 66.9
A09p53400 Brassica napus HOM05D003942 ORTHO05D004527 2.3e-134 483.0 356 66.6
Hund27285 Selenicereus undatus HOM05D003942 ORTHO05D004527 3.0e-134 482.6 410 60.2
FAN06G3470 Fragaria x ananassa HOM05D003942 ORTHO05D004527 3.9e-134 482.3 358 65.6
BolC4t24688H Brassica oleracea HOM05D003942 ORTHO05D004527 5.1e-134 481.9 357 65.5
C04p31390 Brassica napus HOM05D003942 ORTHO05D004527 1.5e-133 480.3 352 66.2
FAN03G2475 Fragaria x ananassa HOM05D003942 ORTHO05D004527 1.5e-133 480.3 358 65.6
Sp5g02060 Schrenkiella parvula HOM05D003942 ORTHO05D004527 1.5e-133 480.3 354 66.7
Aa31LG10G15570 Aethionema arabicum HOM05D003942 ORTHO05D004527 2.5e-133 479.6 349 67.6
Eucgr.E00157 Eucalyptus grandis HOM05D003942 ORTHO05D004527 4.3e-133 478.8 358 65.9
C08p36210 Brassica napus HOM05D003942 ORTHO05D004527 9.6e-133 477.6 356 66.3
BolC8t51203H Brassica oleracea HOM05D003942 ORTHO05D004527 9.6e-133 477.6 356 66.3
Nitab4.5_0001702g0090 Nicotiana tabacum HOM05D003942 ORTHO05D004527 9.6e-133 477.6 358 67.3
BraA09t40766Z Brassica rapa HOM05D003942 ORTHO05D004527 1.3e-132 477.2 356 66.0
Thhalv10006010m.g Eutrema salsugineum HOM05D003942 ORTHO05D004527 1.6e-132 476.9 350 66.6
AUR62004344 Chenopodium quinoa HOM05D003942 ORTHO05D004527 8.1e-132 474.6 353 65.4
AL5G43590 Arabidopsis lyrata HOM05D003942 ORTHO05D004527 1.1e-131 474.2 354 66.1
Carub.0005s2799 Capsella rubella HOM05D003942 ORTHO05D004527 1.4e-131 473.8 350 66.6
AUR62022550 Chenopodium quinoa HOM05D003942 ORTHO05D004527 1.8e-131 473.4 359 64.9
Migut.N01440 Erythranthe guttata HOM05D003942 ORTHO05D004527 2.4e-131 473.0 350 65.1
SalBow5G2271 Salvia bowleyana HOM05D003942 ORTHO05D004527 1.5e-130 470.3 361 64.0
HanXRQChr16g0522811 Helianthus annuus HOM05D003942 ORTHO05D004527 2.0e-130 469.9 396 60.6
HanXRQChr13g0426521 Helianthus annuus HOM05D003942 ORTHO05D004527 1.7e-129 466.8 359 63.5
Lsat_1_v5_gn_3_137060 Lactuca sativa HOM05D003942 ORTHO05D004527 2.2e-129 466.5 422 58.5
Ah.05g180690 Amaranthus hybridus HOM05D003942 ORTHO05D004527 2.9e-129 466.1 411 59.4
DCAR_015969 Daucus carota HOM05D003942 ORTHO05D004527 6.4e-129 464.9 419 59.4
Haze_15488 Corylus avellana HOM05D003942 ORTHO05D004527 1.1e-128 464.2 417 60.4
Lj9A582T85 Lonicera japonica HOM05D003942 ORTHO05D004527 9.3e-128 461.1 480 52.7
BcaC02g10219 Brassica carinata HOM05D003942 ORTHO05D004527 1.2e-127 460.7 352 65.3
BcaC09g52244 Brassica carinata HOM05D003942 ORTHO05D004527 1.6e-127 460.3 354 63.8
ECA240G2096 Erigeron canadensis HOM05D003942 ORTHO05D004527 1.5e-125 453.8 334 66.5
Lsat_1_v5_gn_4_36221 Lactuca sativa HOM05D003942 ORTHO05D004527 1.9e-125 453.4 355 63.9
CARHR141140 Cardamine hirsuta HOM05D003942 ORTHO05D004527 8.2e-124 448.0 355 63.7
BcaC02g07065 Brassica carinata HOM05D003942 ORTHO05D004527 2.4e-123 446.4 350 62.6
BolC4t28689H Brassica oleracea HOM05D003942 ORTHO05D004527 2.4e-123 446.4 350 62.3
AL4G45080 Arabidopsis lyrata HOM05D003942 ORTHO05D004527 4.0e-123 445.7 354 61.6
C04p71910 Brassica napus HOM05D003942 ORTHO05D004527 1.5e-122 443.7 350 62.0
Thhalv10001467m.g Eutrema salsugineum HOM05D003942 ORTHO05D004527 2.0e-122 443.4 357 61.9
BraA04t18872Z Brassica rapa HOM05D003942 ORTHO05D004527 5.8e-122 441.8 350 62.0
Sp4g27940 Schrenkiella parvula HOM05D003942 ORTHO05D004527 5.8e-122 441.8 349 62.5
Oeu020562.1 Olea europaea HOM05D003942 ORTHO05D004527 6.5e-121 438.3 333 65.5
Aa31LG1G27300 Aethionema arabicum HOM05D003942 ORTHO05D004527 1.4e-120 437.2 358 60.9
A04p34110 Brassica napus HOM05D003942 ORTHO05D004527 2.5e-120 436.4 350 61.7
HPP92_006558 Vanilla planifolia HOM05D003942 ORTHO05D004527 9.3e-120 434.5 359 61.0
Carub.0004s2857 Capsella rubella HOM05D003942 ORTHO05D004527 1.2e-119 434.1 349 61.6
Sc23g0002980 Simmondsia chinensis HOM05D003942 ORTHO05D004527 2.8e-116 422.9 302 70.5
unitig_8.g3394 Utricularia gibba HOM05D003942 ORTHO05D004527 3.4e-114 416.0 355 58.3
Os03g0106000 Oryza sativa ssp. japonica HOM05D003942 ORTHO05D004527 8.5e-113 411.4 356 59.6
EL10Ac1g00428 Beta vulgaris HOM05D003942 ORTHO05D004527 1.6e-111 407.1 306 64.7
Zm00001eb000510 Zea mays HOM05D003942 ORTHO05D004527 4.6e-111 405.6 378 56.1
AT2G45870 Arabidopsis thaliana HOM05D003942 ORTHO05D004527 2.3e-110 403.3 301 65.1
SEGI_25793 Sequoiadendron giganteum HOM05D003942 ORTHO05D004527 3.8e-105 386.0 338 57.7
ECA234G1137 Erigeron canadensis HOM05D003942 ORTHO05D004527 2.7e-103 379.8 319 61.1
SEGI_35716 Sequoiadendron giganteum HOM05D003942 ORTHO05D004527 2.3e-102 376.7 341 57.2
Pp3c4_15850 Physcomitrium patens HOM05D003942 ORTHO05D004527 3.3e-101 372.9 345 54.2
Pp3c3_22870 Physcomitrium patens HOM05D003942 ORTHO05D004527 3.7e-100 369.4 345 54.2
Mapoly0071s0037 Marchantia polymorpha HOM05D003942 ORTHO05D004527 3.1e-99 366.3 342 54.1
Nn1g01512 Nelumbo nucifera HOM05D003942 ORTHO05D004527 1.8e-91 340.5 353 53.3
Duzib138G1448 Durio zibethinus HOM05D003942 ORTHO05D004527 1.6e-90 337.4 418 48.6
SMO364G0338 Selaginella moellendorffii HOM05D003942 ORTHO05D004527 1.6e-90 337.4 318 50.6
Gohir.D11G092500 Gossypium hirsutum HOM05D003942 ORTHO05D004527 8.2e-84 315.1 232 69.0
vmacro13277 Vaccinium macrocarpon HOM05D003942 ORTHO05D004527 5.5e-80 302.4 371 45.8
AT3G61320 Arabidopsis thaliana HOM05D003942 ORTHO05D004527 2.0e-77 293.9 226 63.7
ATR0680G085 Amborella trichopoda HOM05D003942 ORTHO05D004527 3.8e-73 279.6 335 47.5
AagrBONN_evm.TU.Sc2ySwM_344.3805 Anthoceros agrestis HOM05D003942 ORTHO05D004527 1.2e-71 274.6 332 44.6
Mapoly0009s0131 Marchantia polymorpha HOM05D003942 ORTHO05D004527 2.6e-69 266.9 319 43.9
AagrBONN_evm.TU.Sc2ySwM_228.958 Anthoceros agrestis HOM05D003942 ORTHO05D004527 7.5e-69 265.4 298 47.0
Pp3c2_13700 Physcomitrium patens HOM05D003942 ORTHO05D004527 2.3e-65 253.8 312 44.9
AagrBONN_evm.TU.Sc2ySwM_362.1957 Anthoceros agrestis HOM05D003942 ORTHO05D004527 1.9e-64 250.8 294 46.3
HPP92_011356 Vanilla planifolia HOM05D003942 ORTHO05D004527 1.2e-63 248.1 179 64.2
CBR_g44610 Chara braunii HOM05D000505 ORTHO05D000301 3.6e-63 246.5 314 40.4
Pp3c1_34600 Physcomitrium patens HOM05D003942 ORTHO05D004527 5.2e-62 242.7 327 39.8
Pp3c1_34560 Physcomitrium patens HOM05D003942 ORTHO05D004527 2.6e-61 240.4 290 45.2
Pp3c1_3670 Physcomitrium patens HOM05D003942 ORTHO05D004527 2.2e-60 237.3 295 42.4
Pp3c6_24250 Physcomitrium patens HOM05D003942 ORTHO05D004527 1.7e-57 227.6 295 42.7
Pp3c11_9440 Physcomitrium patens HOM05D003942 ORTHO05D004527 3.0e-57 226.9 294 40.5
MD01G1202300 Malus domestica HOM05D003942 ORTHO05D004527 5.0e-57 226.1 230 51.3
FAN10G2852 Fragaria x ananassa HOM05D003942 ORTHO05D004527 4.7e-55 219.5 174 63.8
Pp3c14_6660 Physcomitrium patens HOM05D003942 ORTHO05D004527 1.5e-53 214.5 269 40.9
CARHR171630 Cardamine hirsuta HOM05D003942 ORTHO05D004527 2.0e-53 214.2 173 63.6
AagrBONN_evm.TU.Sc2ySwM_228.2628 Anthoceros agrestis HOM05D003942 ORTHO05D004527 3.6e-47 193.4 153 56.9
CBR_g772 Chara braunii HOM05D003942 ORTHO05D004527 4.7e-47 193.0 329 33.7
Oeu020563.1 Olea europaea HOM05D003942 ORTHO05D004527 5.2e-46 189.5 155 65.2
C05p09980 Brassica napus HOM05D003942 ORTHO05D004527 2.4e-43 180.6 145 61.4
HPP92_011355 Vanilla planifolia HOM05D003942 ORTHO05D004527 3.2e-43 180.3 149 65.1
Cre06.g277650 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 6.0e-42 176.0 329 31.6
SEGI_34263 Sequoiadendron giganteum HOM05D003942 ORTHO05D004527 6.6e-41 172.6 173 56.1
Cre16.g663450 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 3.3e-40 170.2 300 35.7
Cre06.g261750 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 8.1e-39 165.6 331 30.2
Cre16.g662600 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 2.4e-38 164.1 300 34.0
Cre16.g663400 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 6.8e-38 162.5 300 34.0
CBR_g38187 Chara braunii HOM05D003942 ORTHO05D004527 2.2e-36 157.5 220 41.4
Cre11.g474700 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 3.8e-36 156.8 342 31.6
FAN10G0144 Fragaria x ananassa HOM05D003942 ORTHO05D004527 2.3e-33 147.5 141 58.9
Cre01.g038100 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 3.6e-31 140.2 314 27.7
Cre07.g355300 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 1.5e-29 134.8 299 29.1
PRCOL_00004040 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 2.9e-28 130.6 304 30.3
Pp3c11_6680 Physcomitrium patens HOM05D003942 ORTHO05D004527 1.1e-27 128.6 103 56.3
PRCOL_00006054 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 2.7e-26 124.0 300 31.7
BcaB02g11262 Brassica carinata HOM05D003942 ORTHO05D004527 3.9e-25 120.2 119 47.1
SEGI_01331 Sequoiadendron giganteum HOM05D003942 ORTHO05D004527 6.6e-25 119.4 99 60.6
Cre03.g199600 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 8.1e-23 112.5 220 29.5
PRCOL_00003097 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 4.0e-22 110.2 295 28.5
Oeu020564.1 Olea europaea HOM05D003942 ORTHO05D004527 2.0e-21 107.8 77 70.1
PRCOL_00005764 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 2.0e-21 107.8 323 28.8
MCO01G232 Micromonas commoda HOM05D003942 ORTHO05D004527 2.6e-21 107.5 327 26.0
PRCOL_00003548 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 1.3e-20 105.1 314 30.3
PRCOL_00004398 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 6.4e-20 102.8 310 29.4
FAN10G3156 Fragaria x ananassa HOM05D000449 ORTHO05D004527 2.4e-19 100.9 100 56.0
Pp3c6_17920 Physcomitrium patens HOM05D003942 ORTHO05D004527 1.8e-17 94.7 193 34.2
MCO09G357 Micromonas commoda HOM05D003942 ORTHO05D004527 5.6e-16 89.7 350 25.4
MCO01G007 Micromonas commoda HOM05D003942 ORTHO05D004527 4.5e-13 80.1 301 25.6
PSO478G4509 Papaver somniferum HOM05D003942 ORTHO05D004527 2.8e-07 60.8 63 55.6
Pp3c3_14710 Physcomitrium patens HOM05D003942 ORTHO05D004527 3.1e-06 57.4 151 33.1
Pp3c20_3390 Physcomitrium patens HOM05D003942 ORTHO05D004527 4.0e-06 57.0 90 38.9


User provided reference genes

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