Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_23581_v3 Cicer arietinum L. HOM05D007796 ORTHO05D009853 8.9e-72 273.5 136 100.0
Ca_23572_v3 Cicer arietinum L. HOM05D007796 ORTHO05D009853 1.2e-71 273.1 135 100.0
Psat4g158920 Pisum sativum HOM05D007796 ORTHO05D009853 9.4e-21 104.0 71 74.6
TPR.G5064 Trifolium pratense HOM05D007796 ORTHO05D009853 1.2e-20 103.6 71 73.2
Medtr8g028085 Medicago truncatula HOM05D007796 ORTHO05D009853 1.4e-19 100.1 56 85.7
Lj3g0021991 Lotus japonicus HOM05D007796 ORTHO05D009853 2.2e-17 92.8 69 66.7
arahy.Tifrunner.gnm1.ann1.M2QILT Arachis hypogaea HOM05D007796 ORTHO05D009853 6.3e-17 91.3 67 70.1
Lalb_Chr17g0342271 Lupinus albus HOM05D007796 ORTHO05D009853 1.4e-13 80.1 56 67.9
PGR083G0658 Punica granatum HOM05D007796 ORTHO05D009853 9.4e-13 77.4 55 63.6
Hma1.2p1_0487F.1_g163590 Hydrangea macrophylla HOM05D007796 ORTHO05D009853 2.7e-12 75.9 55 61.8
Manes.12G058902 Manihot esculenta HOM05D007796 ORTHO05D009853 7.9e-12 74.3 68 54.4
Lsat_1_v5_gn_2_38801 Lactuca sativa HOM05D007796 ORTHO05D009853 1.0e-11 73.9 61 55.7
Eucgr.H00678 Eucalyptus grandis HOM05D007796 ORTHO05D009853 2.3e-11 72.8 55 60.0
Actinidia27090 Actinidia chinensis HOM05D007796 ORTHO05D009853 3.9e-11 72.0 69 52.2
MD16G1238500 Malus domestica HOM05D007796 ORTHO05D009853 3.9e-11 72.0 56 60.7
Atru.chr6.3486 Acer truncatum HOM05D007796 ORTHO05D009853 5.1e-11 71.6 56 57.1
Aa31LG5G18120 Aethionema arabicum HOM05D007796 ORTHO05D009853 5.1e-11 71.6 56 58.9
FvH4_4g06110 Fragaria vesca HOM05D007796 ORTHO05D009853 5.1e-11 71.6 56 60.7
FAN07G1080 Fragaria x ananassa HOM05D007796 ORTHO05D009853 5.1e-11 71.6 56 60.7
FAN12G2913 Fragaria x ananassa HOM05D007796 ORTHO05D009853 5.1e-11 71.6 56 60.7
FAN17G0402 Fragaria x ananassa HOM05D007796 ORTHO05D009853 5.1e-11 71.6 56 60.7
Gohir.A07G088800 Gossypium hirsutum HOM05D007796 ORTHO05D009853 5.1e-11 71.6 55 60.0
TWI36G1414 Tripterygium wilfordii HOM05D007796 ORTHO05D009853 6.7e-11 71.2 55 56.4
Nn7g37568 Nelumbo nucifera HOM05D007796 ORTHO05D009853 8.8e-11 70.9 62 51.6
Prupe.1G064700 Prunus persica HOM05D007796 ORTHO05D009853 8.8e-11 70.9 56 60.7
MD13G1233500 Malus domestica HOM05D007796 ORTHO05D009853 1.1e-10 70.5 56 57.1
RcHm_v2.0_Chr4g0397691 Rosa chinensis HOM05D007796 ORTHO05D009853 1.1e-10 70.5 56 58.9
A05p40630 Brassica napus HOM05D007796 ORTHO05D009853 1.5e-10 70.1 74 47.3
BraA05t22794Z Brassica rapa HOM05D007796 ORTHO05D009853 1.5e-10 70.1 74 47.3
CSS0002213 Camellia sinensis var. sinensis HOM05D007796 ORTHO05D009853 1.5e-10 70.1 54 57.4
CSS0009025 Camellia sinensis var. sinensis HOM05D007796 ORTHO05D009853 1.5e-10 70.1 54 57.4
CANSAT35G1173 Cannabis sativa HOM05D007796 ORTHO05D009853 1.5e-10 70.1 55 58.2
Rhsim09G0019700 Rhododendron simsii HOM05D007796 ORTHO05D009853 1.5e-10 70.1 54 57.4
BcaC05g29552 Brassica carinata HOM05D000328 ORTHO05D000191 2.0e-10 69.7 60 51.7
BolC5t34628H Brassica oleracea HOM05D007796 ORTHO05D009853 2.0e-10 69.7 60 51.7
Ciclev10018341m.g Citrus clementina HOM05D007796 ORTHO05D009853 2.0e-10 69.7 56 55.4
THA.LOC104822455 Tarenaya hassleriana HOM05D007796 ORTHO05D009853 2.0e-10 69.7 55 52.7
FAN22G0383 Fragaria x ananassa HOM05D007796 ORTHO05D009853 2.6e-10 69.3 56 58.9
Gohir.D07G093800 Gossypium hirsutum HOM05D007796 ORTHO05D009853 2.6e-10 69.3 55 56.4
Gorai.001G100500 Gossypium raimondii HOM05D007796 ORTHO05D009853 2.6e-10 69.3 55 56.4
Rhsim09G0019400 Rhododendron simsii HOM05D007796 ORTHO05D009853 2.6e-10 69.3 68 50.0
Sp3g06500 Schrenkiella parvula HOM05D007796 ORTHO05D009853 2.6e-10 69.3 58 53.4
C05p59740 Brassica napus HOM05D007796 ORTHO05D009853 3.3e-10 68.9 58 51.7
vmacro00674 Vaccinium macrocarpon HOM05D007796 ORTHO05D009853 3.3e-10 68.9 56 53.6
MELO3C012717.2 Cucumis melo HOM05D007796 ORTHO05D009853 4.4e-10 68.6 55 60.0
CsaV3_7G027090 Cucumis sativus L. HOM05D007796 ORTHO05D009853 4.4e-10 68.6 89 46.1
Thhalv10021850m.g Eutrema salsugineum HOM05D007796 ORTHO05D009853 4.4e-10 68.6 56 55.4
Manes.13G057800 Manihot esculenta HOM05D007796 ORTHO05D009853 4.4e-10 68.6 57 52.6
CARHR082260 Cardamine hirsuta HOM05D007796 ORTHO05D009853 5.7e-10 68.2 58 51.7
Nitab4.5_0000242g0120 Nicotiana tabacum HOM05D007796 ORTHO05D009853 7.4e-10 67.8 54 55.6
Oeu022686.1 Olea europaea HOM05D007796 ORTHO05D009853 7.4e-10 67.8 55 54.5
AL3G18920 Arabidopsis lyrata HOM05D007796 ORTHO05D009853 1.7e-09 66.6 58 50.0
Carub.0003s0713 Capsella rubella HOM05D007796 ORTHO05D009853 1.7e-09 66.6 58 48.3
Cpa.g.sc8.20 Carica papaya HOM05D007796 ORTHO05D009853 2.2e-09 66.2 82 42.7
Rhsim09G0018700 Rhododendron simsii HOM05D007796 ORTHO05D009853 2.2e-09 66.2 68 48.5
Cfa010674 Carpinus fangiana HOM05D005998 ORTHO05D007664 2.8e-09 65.9 58 50.0
Potri.014G197400 Populus trichocarpa HOM05D007796 ORTHO05D009853 2.8e-09 65.9 57 52.6
Thecc.01G204800 Theobroma cacao HOM05D007796 ORTHO05D009853 2.8e-09 65.9 55 54.5
AT3G07568 Arabidopsis thaliana HOM05D007796 ORTHO05D009853 3.7e-09 65.5 58 48.3
Nitab4.5_0012444g0010 Nicotiana tabacum HOM05D007796 ORTHO05D009853 3.7e-09 65.5 78 44.9
Haze_03600 Corylus avellana HOM05D007796 ORTHO05D009853 6.3e-09 64.7 55 50.9
Migut.G01293 Erythranthe guttata HOM05D007796 ORTHO05D009853 6.3e-09 64.7 55 54.5
Nitab4.5_0001521g0060 Nicotiana tabacum HOM05D007796 ORTHO05D009853 8.2e-09 64.3 78 43.6
SalBow2G2954 Salvia bowleyana HOM05D007796 ORTHO05D009853 8.2e-09 64.3 55 52.7
MSTRG.9748 Avicennia marina HOM05D007796 ORTHO05D009853 1.1e-08 63.9 55 50.9
QL09p048026 Quercus lobata HOM05D007796 ORTHO05D009853 1.4e-08 63.5 67 52.2
CiPaw.13G057300 Carya illinoinensis HOM05D007796 ORTHO05D009853 1.8e-08 63.2 79 40.5
Glyma.07G059400 Glycine max HOM05D007796 ORTHO05D009853 1.8e-08 63.2 57 52.6
COL.COLO4_04515 Corchorus olitorius HOM05D007796 ORTHO05D009853 4.1e-08 62.0 55 50.9
HanXRQChr12g0382011 Helianthus annuus HOM05D007796 ORTHO05D009853 7.0e-08 61.2 53 47.2
MBI07_g07943_MAGBIO Magnolia biondii HOM05D007796 ORTHO05D009853 7.0e-08 61.2 79 41.8
PSO017G5834 Papaver somniferum HOM05D007796 ORTHO05D009853 9.1e-08 60.8 55 52.7
Peaxi162Scf00075g01546 Petunia axillaris HOM05D007796 ORTHO05D009853 1.2e-07 60.5 58 48.3
Sopen08g004900 Solanum pennellii HOM05D007796 ORTHO05D009853 1.5e-07 60.1 58 46.6
Phvul.010G110050 Phaseolus vulgaris HOM05D007796 ORTHO05D009853 2.0e-07 59.7 56 57.1
Phvul.010G110100 Phaseolus vulgaris HOM05D007796 ORTHO05D009853 7.7e-07 57.8 56 55.4
unitig_0.g2392 Utricularia gibba HOM05D007796 ORTHO05D009853 7.7e-07 57.8 55 45.5
ATR0743G114 Amborella trichopoda HOM05D007796 ORTHO05D009853 1.0e-06 57.4 55 50.9
DCAR_005469 Daucus carota HOM05D007796 ORTHO05D009853 2.2e-06 56.2 54 48.1
Glyma.16G028300 Glycine max HOM05D007796 ORTHO05D009853 2.2e-06 56.2 74 44.6
Sed0024779 Sechium edule HOM05D007796 ORTHO05D009853 2.2e-06 56.2 96 36.5
AUR62023828 Chenopodium quinoa HOM05D007796 ORTHO05D009853 3.8e-06 55.5 61 42.6
EL10Ac3g06021 Beta vulgaris HOM05D007796 ORTHO05D009853 5.0e-06 55.1 98 35.7


User provided reference genes

Program Settings