Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_23580_v3 Cicer arietinum L. HOM05D006993 ORTHO05D008336 1.7e-93 346.3 212 100.0
Medtr8g028100 Medicago truncatula HOM05D006993 ORTHO05D008336 2.1e-83 312.8 213 78.4
TPR.G5057 Trifolium pratense HOM05D006993 ORTHO05D008336 4.6e-83 311.6 213 77.9
Glyma.16G028500 Glycine max HOM05D006993 ORTHO05D008336 4.9e-77 291.6 215 86.0
VMungo0331G1491 Vigna mungo HOM05D006993 ORTHO05D008336 5.4e-76 288.1 216 81.5
Glyma.07G059600 Glycine max HOM05D006993 ORTHO05D008336 3.5e-75 285.4 216 80.6
Lj3g0006688 Lotus japonicus HOM05D006993 ORTHO05D008336 3.5e-75 285.4 215 77.7
Phvul.010G110000 Phaseolus vulgaris HOM05D006993 ORTHO05D008336 2.3e-74 282.7 211 82.5
arahy.Tifrunner.gnm1.ann1.RC1IE0 Arachis hypogaea HOM05D006993 ORTHO05D008336 3.1e-71 272.3 220 80.0
Lalb_Chr17g0342261 Lupinus albus HOM05D006993 ORTHO05D008336 2.6e-70 269.2 216 70.4
Ca_23571_v3 Cicer arietinum L. HOM05D006993 ORTHO05D008336 2.0e-62 243.0 161 100.0
Psat4g158880 Pisum sativum HOM05D006993 ORTHO05D008336 1.4e-52 210.3 167 70.1
Manes.13G058300 Manihot esculenta HOM05D006993 ORTHO05D008336 7.9e-51 204.5 206 57.8
CiPaw.13G058900 Carya illinoinensis HOM05D006993 ORTHO05D008336 1.0e-50 204.1 217 60.8
Potri.014G172800 Populus trichocarpa HOM05D006993 ORTHO05D008336 1.4e-50 203.8 203 60.1
GSVIVG01006115001 Vitis vinifera HOM05D006993 ORTHO05D008336 2.3e-50 203.0 157 68.2
QL09p044784 Quercus lobata HOM05D006993 ORTHO05D008336 3.9e-50 202.2 175 64.6
Ciclev10016771m.g Citrus clementina HOM05D006993 ORTHO05D008336 8.8e-50 201.1 198 63.6
Sabra14G0132300 Salix brachista HOM05D006993 ORTHO05D008336 1.1e-49 200.7 203 60.1
TWI18G0796 Tripterygium wilfordii HOM05D006993 ORTHO05D008336 2.5e-49 199.5 213 59.6
TAR626G0971 Trochodendron aralioides HOM05D006993 ORTHO05D008336 9.7e-49 197.6 199 55.8
FAN08G3673 Fragaria x ananassa HOM05D006993 ORTHO05D008336 1.3e-48 197.2 158 65.8
FvH4_5g27060 Fragaria vesca HOM05D006993 ORTHO05D008336 1.7e-48 196.8 181 60.2
Duzib211G0651 Durio zibethinus HOM05D006993 ORTHO05D008336 2.2e-48 196.4 112 84.8
Atru.chr6.3467 Acer truncatum HOM05D006993 ORTHO05D008336 3.7e-48 195.7 220 58.2
Nn1g08444 Nelumbo nucifera HOM05D006993 ORTHO05D008336 3.7e-48 195.7 157 76.4
Gohir.A11G146100 Gossypium hirsutum HOM05D006993 ORTHO05D008336 4.8e-48 195.3 215 54.4
Gorai.007G162900 Gossypium raimondii HOM05D006993 ORTHO05D008336 4.8e-48 195.3 215 54.4
Duzib138G1606 Durio zibethinus HOM05D006993 ORTHO05D008336 6.3e-48 194.9 211 58.8
FAN13G2105 Fragaria x ananassa HOM05D006993 ORTHO05D008336 8.2e-48 194.5 181 71.8
Sopen09g012650 Solanum pennellii HOM05D006993 ORTHO05D008336 8.2e-48 194.5 170 64.1
FAN04G3061 Fragaria x ananassa HOM05D006993 ORTHO05D008336 1.1e-47 194.1 158 78.5
Prupe.5G011000 Prunus persica HOM05D006993 ORTHO05D008336 1.1e-47 194.1 163 65.6
CSS0002802 Camellia sinensis var. sinensis HOM05D006993 ORTHO05D008336 1.4e-47 193.7 216 61.6
Cpa.g.sc8.8 Carica papaya HOM05D006993 ORTHO05D008336 1.4e-47 193.7 209 61.2
Cfa010616 Carpinus fangiana HOM05D006993 ORTHO05D008336 1.8e-47 193.4 153 75.2
CAN.G3.14 Capsicum annuum HOM05D006993 ORTHO05D008336 3.1e-47 192.6 109 81.7
Peaxi162Scf12724g00016 Petunia axillaris HOM05D006993 ORTHO05D008336 3.1e-47 192.6 217 59.9
PGSC0003DMG400020288 Solanum tuberosum HOM05D006993 ORTHO05D008336 3.1e-47 192.6 192 66.1
Solyc09g018890.3 Solanum lycopersicum HOM05D006993 ORTHO05D008336 4.1e-47 192.2 170 58.8
CANSAT11G1969 Cannabis sativa HOM05D006993 ORTHO05D008336 5.3e-47 191.8 215 54.4
FAN18G3928 Fragaria x ananassa HOM05D006993 ORTHO05D008336 6.9e-47 191.4 158 65.8
MD00G1144800 Malus domestica HOM05D006993 ORTHO05D008336 6.9e-47 191.4 161 62.7
RcHm_v2.0_Chr7g0218061 Rosa chinensis HOM05D006993 ORTHO05D008336 9.1e-47 191.0 154 79.9
Thecc.01G203600 Theobroma cacao HOM05D006993 ORTHO05D008336 1.2e-46 190.7 230 51.7
MSTRG.18520 Avicennia marina HOM05D006993 ORTHO05D008336 2.0e-46 189.9 159 62.9
CSS0020795 Camellia sinensis var. sinensis HOM05D006993 ORTHO05D008336 3.4e-46 189.1 193 54.4
Nitab4.5_0009028g0040 Nicotiana tabacum HOM05D006993 ORTHO05D008336 4.5e-46 188.7 111 79.3
CSS0028614 Camellia sinensis var. sinensis HOM05D006993 ORTHO05D008336 1.3e-45 187.2 216 61.1
Eucgr.H00675 Eucalyptus grandis HOM05D006993 ORTHO05D008336 1.3e-45 187.2 215 64.7
Oeu013422.3 Olea europaea HOM05D006993 ORTHO05D008336 1.7e-45 186.8 209 51.7
MBI15_g35689_MAGBIO Magnolia biondii HOM05D006993 ORTHO05D008336 2.9e-45 186.0 170 71.2
MD15G1141400 Malus domestica HOM05D006993 ORTHO05D008336 2.9e-45 186.0 110 80.0
PGR083G2302 Punica granatum HOM05D006993 ORTHO05D008336 2.9e-45 186.0 218 64.7
ATR0751G064 Amborella trichopoda HOM05D006993 ORTHO05D008336 3.8e-45 185.7 158 61.4
CsaV3_5G035360 Cucumis sativus L. HOM05D006993 ORTHO05D008336 3.8e-45 185.7 155 60.0
Sed0005772 Sechium edule HOM05D006993 ORTHO05D008336 5.0e-45 185.3 170 53.5
Actinidia23138 Actinidia chinensis HOM05D006993 ORTHO05D008336 6.5e-45 184.9 208 53.8
Cc01_g15720 Coffea canephora HOM05D006993 ORTHO05D008336 6.5e-45 184.9 218 58.3
Lsat_1_v5_gn_9_15700 Lactuca sativa HOM05D006993 ORTHO05D008336 6.5e-45 184.9 176 56.8
Oeu049571.1 Olea europaea HOM05D006993 ORTHO05D008336 6.5e-45 184.9 208 58.2
CDE03G0427 Ceratophyllum demersum HOM05D006993 ORTHO05D008336 1.1e-44 184.1 204 53.4
DCAR_018599 Daucus carota HOM05D000190 ORTHO05D008336 1.4e-44 183.7 157 70.7
Gohir.D07G168900 Gossypium hirsutum HOM05D006993 ORTHO05D008336 1.9e-44 183.3 188 56.9
Lj2A1109T68 Lonicera japonica HOM05D006993 ORTHO05D008336 1.9e-44 183.3 112 77.7
AL3G41710 Arabidopsis lyrata HOM05D006993 ORTHO05D008336 2.5e-44 183.0 182 56.0
COL.COLO4_19719 Corchorus olitorius HOM05D006993 ORTHO05D008336 3.2e-44 182.6 225 55.6
ECA247G3631 Erigeron canadensis HOM05D006993 ORTHO05D008336 3.2e-44 182.6 111 75.7
Potri.002G217400 Populus trichocarpa HOM05D006993 ORTHO05D008336 3.2e-44 182.6 204 58.8
MELO3C012348.2 Cucumis melo HOM05D006993 ORTHO05D008336 5.5e-44 181.8 212 50.9
Aqoxy4G02329 Aquilegia oxysepala HOM05D006993 ORTHO05D008336 9.4e-44 181.0 157 66.9
Gorai.N000700 Gossypium raimondii HOM05D006993 ORTHO05D008336 9.4e-44 181.0 195 53.8
AT2G04039 Arabidopsis thaliana HOM05D006993 ORTHO05D008336 2.1e-43 179.9 185 54.6
CSS0001652 Camellia sinensis var. sinensis HOM05D006993 ORTHO05D008336 2.7e-43 179.5 193 53.9
Duzib133G0497 Durio zibethinus HOM05D006993 ORTHO05D008336 3.6e-43 179.1 109 82.6
SalBow2G0576 Salvia bowleyana HOM05D006993 ORTHO05D008336 4.7e-43 178.7 111 75.7
Aa31sc249G30 Aethionema arabicum HOM05D006993 ORTHO05D008336 1.4e-42 177.2 207 51.2
PSO675G6922 Papaver somniferum HOM05D006993 ORTHO05D008336 1.4e-42 177.2 193 50.8
CDE06G2320 Ceratophyllum demersum HOM05D006993 ORTHO05D008336 1.8e-42 176.8 154 61.0
Thhalv10002670m.g Eutrema salsugineum HOM05D006993 ORTHO05D008336 1.8e-42 176.8 211 49.3
Rhsim13G0056200 Rhododendron simsii HOM05D006570 ORTHO05D008193 2.3e-42 176.4 158 71.5
PSO541G2665 Papaver somniferum HOM05D006993 ORTHO05D008336 3.9e-42 175.6 193 52.3
AUR62028621 Chenopodium quinoa HOM05D006993 ORTHO05D008336 5.1e-42 175.3 199 59.3
BcaB06g26751 Brassica carinata HOM05D006993 ORTHO05D008336 6.7e-42 174.9 213 58.7
Migut.D00756 Erythranthe guttata HOM05D006993 ORTHO05D008336 8.8e-42 174.5 192 51.6
Sp3g23040 Schrenkiella parvula HOM05D006993 ORTHO05D008336 1.5e-41 173.7 211 58.3
vmacro02850 Vaccinium macrocarpon HOM05D006993 ORTHO05D008336 3.3e-41 172.6 199 51.3
C07p10500 Brassica napus HOM05D006993 ORTHO05D008336 5.7e-41 171.8 197 50.3
EL10Ac5g10566 Beta vulgaris HOM05D006993 ORTHO05D008336 9.7e-41 171.0 197 59.4
A07p06910 Brassica napus HOM05D006993 ORTHO05D008336 9.7e-41 171.0 197 50.3
BraA07t28482Z Brassica rapa HOM05D006993 ORTHO05D008336 9.7e-41 171.0 197 50.3
arahy.Tifrunner.gnm1.ann1.6DX8AG Arachis hypogaea HOM05D006993 ORTHO05D008336 1.3e-40 170.6 214 50.9
BcaC06g35821 Brassica carinata HOM05D006993 ORTHO05D008336 1.3e-40 170.6 197 50.3
BolC7t41517H Brassica oleracea HOM05D006993 ORTHO05D008336 1.3e-40 170.6 197 50.3
CARHR101970 Cardamine hirsuta HOM05D006993 ORTHO05D008336 1.3e-40 170.6 112 73.2
AUR62008046 Chenopodium quinoa HOM05D006993 ORTHO05D008336 2.2e-40 169.9 197 58.9
HanXRQChr08g0230791 Helianthus annuus HOM05D006993 ORTHO05D008336 3.1e-39 166.0 112 68.8
Zm00001eb327210 Zea mays HOM05D006993 ORTHO05D008336 2.0e-38 163.3 156 62.2
Carub.0003s2586 Capsella rubella HOM05D006993 ORTHO05D008336 5.9e-38 161.8 106 75.5
unitig_736.g22974 Utricularia gibba HOM05D006993 ORTHO05D008336 3.8e-37 159.1 109 69.7
Zm00001eb108910 Zea mays HOM05D006993 ORTHO05D008336 1.1e-36 157.5 198 46.5
SalBow6G6587 Salvia bowleyana HOM05D006993 ORTHO05D008336 2.5e-36 156.4 100 74.0
SalBow2G2967 Salvia bowleyana HOM05D006993 ORTHO05D008336 4.2e-36 155.6 180 54.4
Gohir.A07G162350 Gossypium hirsutum HOM05D006993 ORTHO05D008336 5.5e-36 155.2 171 54.4
Ah.11g050660 Amaranthus hybridus HOM05D006993 ORTHO05D008336 1.2e-35 154.1 142 57.0
Os07g0607800 Oryza sativa ssp. japonica HOM05D006993 ORTHO05D008336 3.6e-35 152.5 106 64.2
Nitab4.5_0005967g0020 Nicotiana tabacum HOM05D006993 ORTHO05D008336 1.7e-32 143.7 111 65.8
TWI36G0749 Tripterygium wilfordii HOM05D006993 ORTHO05D008336 2.8e-32 142.9 112 66.1
ClCG05G021810 Citrullus lanatus HOM05D006993 ORTHO05D008336 1.1e-28 131.0 111 58.6
AagrBONN_evm.TU.Sc2ySwM_344.1609 Anthoceros agrestis HOM05D006993 ORTHO05D008336 9.4e-28 127.9 108 57.4
Mapoly0043s0057 Marchantia polymorpha HOM05D006993 ORTHO05D008336 3.1e-23 112.8 108 50.0
SMO111G0038 Selaginella moellendorffii HOM05D006993 ORTHO05D008336 9.1e-23 111.3 101 50.5
Pp3c2_17900 Physcomitrium patens HOM05D006993 ORTHO05D008336 2.7e-22 109.8 106 50.9
CBR_g51823 Chara braunii HOM05D006993 ORTHO05D008336 8.6e-13 78.2 72 52.8
Ca_23582_v3 Cicer arietinum L. HOM05D000001 ORTHO05D000003 1.8e-10 70.5 39 89.7
Haze_03547 Corylus avellana HOM05D006993 ORTHO05D008336 4.4e-09 65.9 147 51.0
THA.LOC104815380 Tarenaya hassleriana HOM05D006993 ORTHO05D008336 1.1e-07 61.2 153 47.1
Gohir.D11G152300 Gossypium hirsutum HOM05D006993 ORTHO05D008336 7.0e-07 58.5 144 36.1


User provided reference genes

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