Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_23571_v3 Cicer arietinum L. HOM05D006993 ORTHO05D008336 1.2e-68 263.5 172 100.0
Ca_23580_v3 Cicer arietinum L. HOM05D006993 ORTHO05D008336 1.2e-62 243.4 161 100.0
Medtr8g028100 Medicago truncatula HOM05D006993 ORTHO05D008336 5.6e-55 218.0 162 74.7
TPR.G5057 Trifolium pratense HOM05D006993 ORTHO05D008336 2.1e-54 216.1 162 74.1
Psat4g158880 Pisum sativum HOM05D006993 ORTHO05D008336 2.4e-53 212.6 168 70.2
Glyma.16G028500 Glycine max HOM05D006993 ORTHO05D008336 4.6e-49 198.4 160 86.9
Phvul.010G110000 Phaseolus vulgaris HOM05D006993 ORTHO05D008336 3.9e-48 195.3 164 81.7
Glyma.07G059600 Glycine max HOM05D006993 ORTHO05D008336 4.3e-47 191.8 161 79.5
VMungo0331G1491 Vigna mungo HOM05D006993 ORTHO05D008336 5.6e-47 191.4 165 80.0
Lj3g0006688 Lotus japonicus HOM05D006993 ORTHO05D008336 1.8e-45 186.4 164 73.2
arahy.Tifrunner.gnm1.ann1.RC1IE0 Arachis hypogaea HOM05D006993 ORTHO05D008336 9.9e-44 180.6 169 78.7
Lalb_Chr17g0342261 Lupinus albus HOM05D006993 ORTHO05D008336 1.3e-40 170.2 165 63.0
CiPaw.13G058900 Carya illinoinensis HOM05D006993 ORTHO05D008336 8.7e-24 114.4 170 51.8
Manes.13G058300 Manihot esculenta HOM05D006993 ORTHO05D008336 1.9e-23 113.2 155 49.0
Ciclev10016771m.g Citrus clementina HOM05D006993 ORTHO05D008336 4.3e-23 112.1 150 55.3
QL09p044784 Quercus lobata HOM05D006993 ORTHO05D008336 5.7e-23 111.7 128 53.1
GSVIVG01006115001 Vitis vinifera HOM05D006993 ORTHO05D008336 5.7e-23 111.7 109 57.8
Potri.014G172800 Populus trichocarpa HOM05D006993 ORTHO05D008336 9.7e-23 110.9 154 50.0
Sabra14G0132300 Salix brachista HOM05D006993 ORTHO05D008336 1.1e-21 107.5 154 50.0
TAR626G0971 Trochodendron aralioides HOM05D006993 ORTHO05D008336 1.1e-21 107.5 151 45.0
CSS0002802 Camellia sinensis var. sinensis HOM05D006993 ORTHO05D008336 3.1e-21 105.9 169 53.8
CANSAT11G1969 Cannabis sativa HOM05D006993 ORTHO05D008336 3.1e-21 105.9 167 44.9
TWI18G0796 Tripterygium wilfordii HOM05D006993 ORTHO05D008336 4.1e-21 105.5 162 50.6
Nn1g08444 Nelumbo nucifera HOM05D006993 ORTHO05D008336 6.9e-21 104.8 109 69.7
AL3G41710 Arabidopsis lyrata HOM05D006993 ORTHO05D008336 9.1e-21 104.4 134 48.5
CDE03G0427 Ceratophyllum demersum HOM05D006993 ORTHO05D008336 1.2e-20 104.0 156 44.2
Duzib211G0651 Durio zibethinus HOM05D006993 ORTHO05D008336 1.2e-20 104.0 64 78.1
Atru.chr6.3467 Acer truncatum HOM05D006993 ORTHO05D008336 1.5e-20 103.6 172 49.4
FAN08G3673 Fragaria x ananassa HOM05D006993 ORTHO05D008336 1.5e-20 103.6 107 56.1
RcHm_v2.0_Chr7g0218061 Rosa chinensis HOM05D006993 ORTHO05D008336 1.5e-20 103.6 106 75.5
FvH4_5g27060 Fragaria vesca HOM05D006993 ORTHO05D008336 2.0e-20 103.2 130 50.0
Cfa010616 Carpinus fangiana HOM05D006993 ORTHO05D008336 2.6e-20 102.8 105 64.8
MD00G1144800 Malus domestica HOM05D006993 ORTHO05D008336 2.6e-20 102.8 116 50.0
Duzib138G1606 Durio zibethinus HOM05D006993 ORTHO05D008336 4.5e-20 102.1 163 49.1
MSTRG.18520 Avicennia marina HOM05D006993 ORTHO05D008336 5.9e-20 101.7 111 51.4
CAN.G3.14 Capsicum annuum HOM05D006993 ORTHO05D008336 5.9e-20 101.7 60 78.3
AT2G04039 Arabidopsis thaliana HOM05D006993 ORTHO05D008336 7.7e-20 101.3 137 46.7
CSS0020795 Camellia sinensis var. sinensis HOM05D006993 ORTHO05D008336 1.0e-19 100.9 145 42.1
Cpa.g.sc8.8 Carica papaya HOM05D006993 ORTHO05D008336 1.0e-19 100.9 161 51.6
FAN13G2105 Fragaria x ananassa HOM05D006993 ORTHO05D008336 1.0e-19 100.9 130 66.2
FAN04G3061 Fragaria x ananassa HOM05D006993 ORTHO05D008336 1.3e-19 100.5 107 74.8
FAN18G3928 Fragaria x ananassa HOM05D006993 ORTHO05D008336 1.3e-19 100.5 110 55.5
Gohir.A11G146100 Gossypium hirsutum HOM05D006993 ORTHO05D008336 1.3e-19 100.5 164 44.5
Gorai.007G162900 Gossypium raimondii HOM05D006993 ORTHO05D008336 1.3e-19 100.5 164 44.5
Nitab4.5_0009028g0040 Nicotiana tabacum HOM05D006993 ORTHO05D008336 1.3e-19 100.5 60 76.7
Prupe.5G011000 Prunus persica HOM05D006993 ORTHO05D008336 1.3e-19 100.5 115 52.2
MD15G1141400 Malus domestica HOM05D006993 ORTHO05D008336 1.7e-19 100.1 64 70.3
CsaV3_5G035360 Cucumis sativus L. HOM05D006993 ORTHO05D008336 2.2e-19 99.8 104 51.0
Lsat_1_v5_gn_9_15700 Lactuca sativa HOM05D006993 ORTHO05D008336 2.2e-19 99.8 125 47.2
MBI15_g35689_MAGBIO Magnolia biondii HOM05D006993 ORTHO05D008336 2.2e-19 99.8 125 62.4
Oeu049571.1 Olea europaea HOM05D006993 ORTHO05D008336 2.2e-19 99.8 157 51.6
CSS0028614 Camellia sinensis var. sinensis HOM05D006993 ORTHO05D008336 2.9e-19 99.4 169 53.3
Oeu013422.3 Olea europaea HOM05D006993 ORTHO05D008336 2.9e-19 99.4 158 43.0
Thecc.01G203600 Theobroma cacao HOM05D006993 ORTHO05D008336 2.9e-19 99.4 182 40.7
Aa31sc249G30 Aethionema arabicum HOM05D006993 ORTHO05D008336 3.8e-19 99.0 152 44.1
Sopen09g012650 Solanum pennellii HOM05D006993 ORTHO05D008336 3.8e-19 99.0 119 53.8
Gohir.D07G168900 Gossypium hirsutum HOM05D006993 ORTHO05D008336 5.0e-19 98.6 145 46.9
Sed0005772 Sechium edule HOM05D006993 ORTHO05D008336 8.5e-19 97.8 119 42.9
ECA247G3631 Erigeron canadensis HOM05D006993 ORTHO05D008336 1.1e-18 97.4 60 73.3
Peaxi162Scf12724g00016 Petunia axillaris HOM05D006993 ORTHO05D008336 1.4e-18 97.1 166 51.2
PGR083G2302 Punica granatum HOM05D006993 ORTHO05D008336 1.4e-18 97.1 167 59.3
DCAR_018599 Daucus carota HOM05D000190 ORTHO05D008336 1.9e-18 96.7 109 62.4
Eucgr.H00675 Eucalyptus grandis HOM05D006993 ORTHO05D008336 1.9e-18 96.7 164 59.1
Solyc09g018890.3 Solanum lycopersicum HOM05D006993 ORTHO05D008336 1.9e-18 96.7 119 46.2
PGSC0003DMG400020288 Solanum tuberosum HOM05D006993 ORTHO05D008336 1.9e-18 96.7 141 57.4
Thhalv10002670m.g Eutrema salsugineum HOM05D006993 ORTHO05D008336 2.5e-18 96.3 163 40.5
Aqoxy4G02329 Aquilegia oxysepala HOM05D006993 ORTHO05D008336 3.2e-18 95.9 109 56.9
Duzib133G0497 Durio zibethinus HOM05D006993 ORTHO05D008336 4.2e-18 95.5 62 75.8
Cc01_g15720 Coffea canephora HOM05D006993 ORTHO05D008336 5.5e-18 95.1 167 51.5
MELO3C012348.2 Cucumis melo HOM05D006993 ORTHO05D008336 5.5e-18 95.1 161 42.2
Lj2A1109T68 Lonicera japonica HOM05D006993 ORTHO05D008336 5.5e-18 95.1 64 67.2
BcaB06g26751 Brassica carinata HOM05D006993 ORTHO05D008336 7.2e-18 94.7 165 52.7
Migut.D00756 Erythranthe guttata HOM05D006993 ORTHO05D008336 1.2e-17 94.0 144 41.7
C07p10500 Brassica napus HOM05D006993 ORTHO05D008336 1.6e-17 93.6 149 41.6
SalBow2G0576 Salvia bowleyana HOM05D006993 ORTHO05D008336 1.6e-17 93.6 64 68.8
SalBow6G6587 Salvia bowleyana HOM05D006993 ORTHO05D008336 1.6e-17 93.6 64 68.8
ATR0751G064 Amborella trichopoda HOM05D006993 ORTHO05D008336 2.1e-17 93.2 110 48.2
Potri.002G217400 Populus trichocarpa HOM05D006993 ORTHO05D008336 2.1e-17 93.2 158 48.1
Sp3g23040 Schrenkiella parvula HOM05D006993 ORTHO05D008336 2.1e-17 93.2 163 52.1
Actinidia23138 Actinidia chinensis HOM05D006993 ORTHO05D008336 2.7e-17 92.8 160 41.2
CARHR101970 Cardamine hirsuta HOM05D006993 ORTHO05D008336 2.7e-17 92.8 64 70.3
COL.COLO4_19719 Corchorus olitorius HOM05D006993 ORTHO05D008336 2.7e-17 92.8 177 46.9
PSO675G6922 Papaver somniferum HOM05D006993 ORTHO05D008336 2.7e-17 92.8 146 41.1
CDE06G2320 Ceratophyllum demersum HOM05D006993 ORTHO05D008336 3.6e-17 92.4 106 50.0
CSS0001652 Camellia sinensis var. sinensis HOM05D006993 ORTHO05D008336 7.9e-17 91.3 145 41.4
PSO541G2665 Papaver somniferum HOM05D006993 ORTHO05D008336 7.9e-17 91.3 146 43.2
SalBow2G2967 Salvia bowleyana HOM05D006993 ORTHO05D008336 1.0e-16 90.9 127 50.4
BcaC06g35821 Brassica carinata HOM05D006993 ORTHO05D008336 1.4e-16 90.5 149 40.9
A07p06910 Brassica napus HOM05D006993 ORTHO05D008336 1.4e-16 90.5 149 40.9
BolC7t41517H Brassica oleracea HOM05D006993 ORTHO05D008336 1.4e-16 90.5 149 40.9
BraA07t28482Z Brassica rapa HOM05D006993 ORTHO05D008336 1.4e-16 90.5 149 40.9
Gorai.N000700 Gossypium raimondii HOM05D006993 ORTHO05D008336 1.8e-16 90.1 152 42.1
Gohir.A07G162350 Gossypium hirsutum HOM05D006993 ORTHO05D008336 3.9e-16 89.0 114 48.2
AUR62028621 Chenopodium quinoa HOM05D006993 ORTHO05D008336 6.7e-16 88.2 151 49.0
EL10Ac5g10566 Beta vulgaris HOM05D006993 ORTHO05D008336 8.8e-16 87.8 156 50.6
Rhsim13G0056200 Rhododendron simsii HOM05D006570 ORTHO05D008193 8.8e-16 87.8 103 66.0
HanXRQChr08g0230791 Helianthus annuus HOM05D006993 ORTHO05D008336 1.5e-15 87.0 64 60.9
unitig_736.g22974 Utricularia gibba HOM05D006993 ORTHO05D008336 3.3e-15 85.9 58 67.2
vmacro02850 Vaccinium macrocarpon HOM05D006993 ORTHO05D008336 7.4e-15 84.7 144 39.6
AUR62008046 Chenopodium quinoa HOM05D006993 ORTHO05D008336 1.7e-14 83.6 151 48.3
Carub.0003s2586 Capsella rubella HOM05D006993 ORTHO05D008336 2.2e-14 83.2 58 74.1
Zm00001eb327210 Zea mays HOM05D006993 ORTHO05D008336 8.2e-14 81.3 106 56.6
arahy.Tifrunner.gnm1.ann1.6DX8AG Arachis hypogaea HOM05D006993 ORTHO05D008336 4.1e-13 79.0 163 40.5
TWI36G0749 Tripterygium wilfordii HOM05D006993 ORTHO05D008336 6.9e-13 78.2 55 63.6
Ah.11g050660 Amaranthus hybridus HOM05D006993 ORTHO05D008336 1.2e-12 77.4 96 44.8
AagrBONN_evm.TU.Sc2ySwM_344.1609 Anthoceros agrestis HOM05D006993 ORTHO05D008336 1.5e-12 77.0 64 54.7
Ca_23582_v3 Cicer arietinum L. HOM05D000001 ORTHO05D000003 3.4e-12 75.9 70 64.3
Zm00001eb108910 Zea mays HOM05D006993 ORTHO05D008336 4.5e-12 75.5 148 37.8
Os07g0607800 Oryza sativa ssp. japonica HOM05D006993 ORTHO05D008336 1.3e-11 73.9 56 58.9
Pp3c2_17900 Physcomitrium patens HOM05D006993 ORTHO05D008336 4.2e-10 68.9 64 48.4
Haze_03547 Corylus avellana HOM05D006993 ORTHO05D008336 3.6e-09 65.9 147 51.0
Mapoly0043s0057 Marchantia polymorpha HOM05D006993 ORTHO05D008336 8.0e-09 64.7 64 46.9
THA.LOC104815380 Tarenaya hassleriana HOM05D006993 ORTHO05D008336 8.0e-09 64.7 190 42.1
Gohir.D11G152300 Gossypium hirsutum HOM05D006993 ORTHO05D008336 5.7e-07 58.5 144 36.1
SMO111G0038 Selaginella moellendorffii HOM05D006993 ORTHO05D008336 1.7e-06 57.0 50 46.0
ClCG05G021810 Citrullus lanatus HOM05D006993 ORTHO05D008336 2.2e-06 56.6 37 70.3
Nitab4.5_0005967g0020 Nicotiana tabacum HOM05D006993 ORTHO05D008336 8.2e-06 54.7 60 50.0


User provided reference genes

Program Settings