Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_23498_v3 Cicer arietinum L. HOM05D007199 ORTHO05D007257 9.6e-147 523.5 264 100.0
Medtr8g027100 Medicago truncatula HOM05D007199 ORTHO05D007257 3.0e-92 342.4 282 70.2
Psat4g216200 Pisum sativum HOM05D007199 ORTHO05D007257 1.9e-86 323.2 287 66.9
TPR.G15900 Trifolium pratense HOM05D007199 ORTHO05D007257 1.8e-81 306.6 251 72.1
VMungo0331G0932 Vigna mungo HOM05D007199 ORTHO05D007257 8.6e-79 297.7 287 60.6
Glyma.16G021400 Glycine max HOM05D007199 ORTHO05D007257 1.9e-78 296.6 291 60.8
Glyma.07G052500 Glycine max HOM05D007199 ORTHO05D007257 2.5e-78 296.2 289 61.2
Phvul.010G116850 Phaseolus vulgaris HOM05D007199 ORTHO05D007257 1.8e-76 290.0 278 60.8
Phvul.010G116900 Phaseolus vulgaris HOM05D007199 ORTHO05D007257 1.8e-76 290.0 278 60.8
Lj3g0002992 Lotus japonicus HOM05D007199 ORTHO05D007257 1.5e-75 287.0 298 60.4
Lalb_Chr10g0100741 Lupinus albus HOM05D007199 ORTHO05D007257 4.1e-65 252.3 291 55.7
Lalb_Chr15g0076391 Lupinus albus HOM05D007199 ORTHO05D007257 1.5e-51 207.2 290 47.6
Haze_15700 Corylus avellana HOM05D007199 ORTHO05D007257 1.7e-42 177.2 295 41.7
QL08p046296 Quercus lobata HOM05D007199 ORTHO05D007257 5.4e-41 172.2 289 42.6
CiPaw.02G043300 Carya illinoinensis HOM05D007199 ORTHO05D007257 1.3e-39 167.5 259 44.0
Prupe.2G194000 Prunus persica HOM05D007199 ORTHO05D007257 8.1e-37 158.3 295 40.3
CiPaw.01G079500 Carya illinoinensis HOM05D007199 ORTHO05D007257 2.4e-36 156.8 300 39.3
Ciclev10024292m.g Citrus clementina HOM05D007199 ORTHO05D007257 5.3e-36 155.6 252 41.7
MD07G1155200 Malus domestica HOM05D007199 ORTHO05D007257 5.3e-36 155.6 301 39.9
arahy.Tifrunner.gnm1.ann1.A7IBVM Arachis hypogaea HOM05D007199 ORTHO05D007257 2.6e-35 153.3 285 41.1
Thecc.01G336800 Theobroma cacao HOM05D007199 ORTHO05D007257 1.6e-32 144.1 264 37.9
Dinv32625 Davidia involucrata HOM05D007199 ORTHO05D007257 2.7e-32 143.3 262 38.9
Cpa.g.sc144.10 Carica papaya HOM05D007199 ORTHO05D007257 1.7e-31 140.6 274 37.2
Atru.chr5.734 Acer truncatum HOM05D007199 ORTHO05D007257 3.9e-31 139.4 268 36.9
Manes.05G019000 Manihot esculenta HOM05D007199 ORTHO05D007257 5.1e-31 139.0 278 38.5
TWI14G0585 Tripterygium wilfordii HOM05D007199 ORTHO05D007257 8.7e-31 138.3 274 37.6
Duzib138G1694 Durio zibethinus HOM05D007199 ORTHO05D007257 1.5e-30 137.5 268 36.9
RcHm_v2.0_Chr1g0360641 Rosa chinensis HOM05D007199 ORTHO05D007257 2.5e-30 136.7 293 40.3
Potri.014G102600 Populus trichocarpa HOM05D007199 ORTHO05D007257 3.3e-30 136.3 269 39.8
arahy.Tifrunner.gnm1.ann1.P1IKWH Arachis hypogaea HOM05D007199 ORTHO05D007257 4.3e-30 136.0 287 38.3
MELO3C022248.2 Cucumis melo HOM05D007199 ORTHO05D007257 4.3e-30 136.0 292 38.4
Nn1g00376 Nelumbo nucifera HOM05D007199 ORTHO05D007257 2.1e-29 133.7 279 35.8
Potri.002G175300 Populus trichocarpa HOM05D007199 ORTHO05D007257 2.1e-29 133.7 268 38.1
FvH4_7g17280 Fragaria vesca HOM05D007199 ORTHO05D007257 3.1e-28 129.8 291 38.5
FAN03G0194 Fragaria x ananassa HOM05D007199 ORTHO05D007257 3.1e-28 129.8 291 38.8
FAN10G2445 Fragaria x ananassa HOM05D007199 ORTHO05D007257 3.1e-28 129.8 291 38.5
FAN10G3440 Fragaria x ananassa HOM05D007199 ORTHO05D007257 3.1e-28 129.8 291 38.5
Duzib133G0933 Durio zibethinus HOM05D007199 ORTHO05D007257 4.0e-28 129.4 249 37.8
Gohir.A11G099400 Gossypium hirsutum HOM05D007199 ORTHO05D007257 5.3e-28 129.0 262 36.3
Gohir.D08G145100 Gossypium hirsutum HOM05D007199 ORTHO05D007257 5.3e-28 129.0 254 37.8
Gorai.004G150000 Gossypium raimondii HOM05D007199 ORTHO05D007257 9.0e-28 128.3 254 37.8
CsaV3_6G008960 Cucumis sativus L. HOM05D007199 ORTHO05D007257 1.2e-27 127.9 293 36.9
Manes.01G254801 Manihot esculenta HOM05D007199 ORTHO05D007257 1.2e-27 127.9 305 36.7
Gorai.007G111200 Gossypium raimondii HOM05D007199 ORTHO05D007257 1.5e-27 127.5 262 35.9
Gohir.D11G103900 Gossypium hirsutum HOM05D007199 ORTHO05D007257 2.0e-27 127.1 262 36.3
FAN06G3172 Fragaria x ananassa HOM05D007199 ORTHO05D007257 2.6e-27 126.7 291 37.5
Gohir.A08G124000 Gossypium hirsutum HOM05D007199 ORTHO05D007257 7.6e-27 125.2 256 36.7
TAR629G0242 Trochodendron aralioides HOM05D007199 ORTHO05D007257 7.6e-27 125.2 239 37.7
MD00G1035800 Malus domestica HOM05D007199 ORTHO05D007257 1.3e-26 124.4 303 36.3
FAN01G2057 Fragaria x ananassa HOM05D007199 ORTHO05D007257 2.9e-26 123.2 291 37.5
TWI23G0381 Tripterygium wilfordii HOM05D007199 ORTHO05D007257 3.8e-26 122.9 259 37.5
GSVIVG01027402001 Vitis vinifera HOM05D007199 ORTHO05D007257 6.4e-26 122.1 270 37.0
Dinv34240 Davidia involucrata HOM05D007199 ORTHO05D007257 1.9e-25 120.6 275 36.4
Hma1.2p1_0309F.1_g120450 Hydrangea macrophylla HOM05D007199 ORTHO05D007257 3.2e-25 119.8 296 34.1
arahy.Tifrunner.gnm1.ann1.GEK5Z0 Arachis hypogaea HOM05D007199 ORTHO05D007257 5.5e-25 119.0 223 39.5
arahy.Tifrunner.gnm1.ann1.WJU08E Arachis hypogaea HOM05D007199 ORTHO05D007257 5.5e-25 119.0 222 40.5
ClCG06G002790 Citrullus lanatus HOM05D007199 ORTHO05D007257 4.6e-24 115.9 278 36.0
CANSAT56G1498 Cannabis sativa HOM05D007199 ORTHO05D007257 8.7e-23 111.7 271 32.5
Nitab4.5_0014168g0010 Nicotiana tabacum HOM05D007199 ORTHO05D007257 1.1e-22 111.3 244 36.1
Sed0010537 Sechium edule HOM05D007199 ORTHO05D007257 1.1e-22 111.3 288 33.0
CSS0043385 Camellia sinensis var. sinensis HOM05D007199 ORTHO05D007257 1.3e-21 107.8 248 34.7
PSO782G1188 Papaver somniferum HOM05D007199 ORTHO05D007257 1.3e-21 107.8 264 34.5
Nitab4.5_0002638g0020 Nicotiana tabacum HOM05D007199 ORTHO05D007257 1.2e-19 101.3 234 34.6
Sopen01g040020 Solanum pennellii HOM05D007199 ORTHO05D007257 1.2e-19 101.3 239 38.1
Lj9C602T4 Lonicera japonica HOM05D007199 ORTHO05D007257 2.6e-19 100.1 219 39.3
Eucgr.E00024 Eucalyptus grandis HOM05D007199 ORTHO05D007257 4.5e-19 99.4 266 34.2
Solyc01g096260.4 Solanum lycopersicum HOM05D007199 ORTHO05D007257 1.3e-18 97.8 242 38.4
Oeu022158.1 Olea europaea HOM05D007199 ORTHO05D007257 1.4e-17 94.4 232 32.3
Aa31LG1G28040 Aethionema arabicum HOM05D007199 ORTHO05D007257 3.2e-17 93.2 259 33.2
THA.LOC104817388 Tarenaya hassleriana HOM05D007199 ORTHO05D007257 3.2e-17 93.2 266 32.7
Solyc10g009320.3 Solanum lycopersicum HOM05D007199 ORTHO05D007257 4.2e-17 92.8 252 33.7
PGSC0003DMG400000126 Solanum tuberosum HOM05D007199 ORTHO05D007257 5.5e-17 92.4 237 34.6
Sopen10g005110 Solanum pennellii HOM05D007199 ORTHO05D007257 9.3e-17 91.7 254 35.0
PGSC0003DMG400005529 Solanum tuberosum HOM05D007199 ORTHO05D007257 9.3e-17 91.7 256 32.4
Rhsim01G0176600 Rhododendron simsii HOM05D007199 ORTHO05D007257 1.2e-16 91.3 286 30.8
THA.LOC104802086 Tarenaya hassleriana HOM05D007199 ORTHO05D007257 1.6e-16 90.9 272 35.7
Peaxi162Scf00087g00199 Petunia axillaris HOM05D007199 ORTHO05D007257 2.7e-16 90.1 268 32.5
COL.COLO4_06259 Corchorus olitorius HOM05D007199 ORTHO05D007257 6.0e-16 89.0 126 39.7
AL4G46070 Arabidopsis lyrata HOM05D012720 ORTHO05D007257 7.9e-16 88.6 270 31.9
CARHR141980 Cardamine hirsuta HOM05D012720 ORTHO05D007257 7.9e-16 88.6 247 32.0
BcaC02g07047 Brassica carinata HOM05D012720 ORTHO05D007257 1.3e-15 87.8 242 33.9
Actinidia28100 Actinidia chinensis HOM05D007199 ORTHO05D007257 1.8e-15 87.4 234 35.0
AUR62008640 Chenopodium quinoa HOM05D021513 ORTHO05D007257 3.0e-15 86.7 227 33.5
AT2G46640 Arabidopsis thaliana HOM05D012720 ORTHO05D007257 5.1e-15 85.9 259 33.6
Carub.0004s2935 Capsella rubella HOM05D012720 ORTHO05D007257 6.7e-15 85.5 243 36.2
TAR375G0146 Trochodendron aralioides HOM05D007199 ORTHO05D007257 6.7e-15 85.5 276 30.1
BolC4t21784H Brassica oleracea HOM05D012720 ORTHO05D007257 1.5e-14 84.3 275 32.7
C04p01310 Brassica napus HOM05D012720 ORTHO05D007257 1.9e-14 84.0 272 32.7
Thhalv10001576m.g Eutrema salsugineum HOM05D012720 ORTHO05D007257 1.9e-14 84.0 268 31.7
A05p01150 Brassica napus HOM05D012720 ORTHO05D007257 2.5e-14 83.6 256 31.6
Gohir.A12G114200 Gossypium hirsutum HOM05D007199 ORTHO05D007257 3.3e-14 83.2 250 30.8
BcaC02g12658 Brassica carinata HOM05D012720 ORTHO05D007257 9.6e-14 81.6 268 32.1
BraA05t19115Z Brassica rapa HOM05D012720 ORTHO05D007257 1.6e-13 80.9 274 31.4
AUR62033124 Chenopodium quinoa HOM05D021513 ORTHO05D007257 4.8e-13 79.3 199 32.7
Sabra14G0075600 Salix brachista HOM05D007199 ORTHO05D007257 1.1e-12 78.2 249 31.3
BcaB01g03200 Brassica carinata HOM05D012720 ORTHO05D007257 1.4e-12 77.8 255 33.3
Actinidia25657 Actinidia chinensis HOM05D007199 ORTHO05D007257 3.1e-12 76.6 86 51.2
CSS0044672 Camellia sinensis var. sinensis HOM05D007199 ORTHO05D007257 3.1e-12 76.6 248 31.5
Nitab4.5_0000917g0050 Nicotiana tabacum HOM05D007199 ORTHO05D007257 5.3e-12 75.9 188 35.1
MSTRG.17369 Avicennia marina HOM05D007199 ORTHO05D007257 2.0e-11 73.9 288 26.7
MBI12_g13712_MAGBIO Magnolia biondii HOM05D007199 ORTHO05D007257 2.0e-11 73.9 263 31.9
DCAR_002988 Daucus carota HOM05D007199 ORTHO05D007257 5.9e-11 72.4 234 32.1
Sp4g28690 Schrenkiella parvula HOM05D012720 ORTHO05D007257 1.7e-10 70.9 263 32.3
Aqoxy5G04262 Aquilegia oxysepala HOM05D007199 ORTHO05D007257 2.9e-10 70.1 254 29.9
EL10Ac7g17504 Beta vulgaris HOM05D021513 ORTHO05D007257 5.0e-10 69.3 230 29.6
ECA236G3069 Erigeron canadensis HOM05D007199 ORTHO05D007257 8.5e-10 68.6 270 30.7
Ah.15g093270 Amaranthus hybridus HOM05D021513 ORTHO05D007257 1.1e-09 68.2 286 28.3
CDE11G0583 Ceratophyllum demersum HOM05D007199 ORTHO05D007257 2.5e-09 67.0 257 29.2
Cc02_g39760 Coffea canephora HOM05D007199 ORTHO05D007257 5.5e-09 65.9 98 45.9
HanXRQChr04g0120361 Helianthus annuus HOM05D007199 ORTHO05D007257 5.5e-09 65.9 285 27.4
CDE09G0027 Ceratophyllum demersum HOM05D007199 ORTHO05D007257 1.2e-08 64.7 260 28.5
Sc23g0001940 Simmondsia chinensis HOM05D007199 ORTHO05D007257 1.2e-08 64.7 283 27.2
Hund16734 Selenicereus undatus HOM05D007199 ORTHO05D007257 1.6e-08 64.3 231 27.3
vmacro12588 Vaccinium macrocarpon HOM05D007199 ORTHO05D007257 2.1e-08 63.9 193 29.0
Lsat_1_v5_gn_4_32721 Lactuca sativa HOM05D007199 ORTHO05D007257 6.1e-08 62.4 256 29.7
SalBow5G5634 Salvia bowleyana HOM05D007199 ORTHO05D007257 6.1e-08 62.4 204 32.4
DCAR_006984 Daucus carota HOM05D007199 ORTHO05D007257 1.0e-07 61.6 270 29.6
MBI04_g33415_MAGBIO Magnolia biondii HOM05D007199 ORTHO05D007257 3.9e-07 59.7 137 35.0
Peaxi162Scf00767g00113 Petunia axillaris HOM05D007199 ORTHO05D007257 2.5e-06 57.0 208 28.4
ATR0620G133 Amborella trichopoda HOM05D007199 ORTHO05D007257 5.7e-06 55.8 236 26.7
AUR62044261 Chenopodium quinoa HOM05D021513 ORTHO05D007257 7.4e-06 55.5 155 33.5
Gorai.008G127500 Gossypium raimondii HOM05D007199 ORTHO05D007257 7.4e-06 55.5 89 33.7
Nitab4.5_0000307g0150 Nicotiana tabacum HOM05D007199 ORTHO05D007257 7.4e-06 55.5 87 34.5


User provided reference genes

Program Settings