Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_23424_v3 Cicer arietinum L. HOM05D004197 ORTHO05D004975 3.5e-64 248.1 120 100.0
Ca_10539_v3 Cicer arietinum L. HOM05D004197 ORTHO05D004975 5.6e-62 240.7 120 96.7
Psat1g223520 Pisum sativum HOM05D004197 ORTHO05D004975 1.6e-61 239.2 120 93.3
Medtr8g022770 Medicago truncatula HOM05D004197 ORTHO05D004975 1.4e-60 236.1 120 92.5
TPR.G16667 Trifolium pratense HOM05D004197 ORTHO05D004975 1.5e-59 232.6 119 90.8
Psat4g166320 Pisum sativum HOM05D004197 ORTHO05D004975 4.5e-59 231.1 118 89.8
QL10p055721 Quercus lobata HOM05D004197 ORTHO05D004975 8.4e-58 226.9 119 89.1
VMungo0251G3068 Vigna mungo HOM05D004197 ORTHO05D004975 3.2e-57 224.9 120 86.7
GSVIVG01038138001 Vitis vinifera HOM05D004197 ORTHO05D004975 3.2e-57 224.9 118 89.0
Glyma.17G164900 Glycine max HOM05D004197 ORTHO05D004975 5.5e-57 224.2 120 85.8
Lalb_Chr04g0253841 Lupinus albus HOM05D004197 ORTHO05D004975 5.5e-57 224.2 120 86.7
Lalb_Chr10g0101191 Lupinus albus HOM05D004197 ORTHO05D004975 7.1e-57 223.8 120 85.0
Phvul.003G238300 Phaseolus vulgaris HOM05D004197 ORTHO05D004975 7.1e-57 223.8 120 85.8
PGR142G4086 Punica granatum HOM05D004197 ORTHO05D004975 9.3e-57 223.4 118 89.8
Lj1g0017974 Lotus japonicus HOM05D004197 ORTHO05D004975 1.6e-56 222.6 120 86.7
Atru.chr12.1293 Acer truncatum HOM05D004197 ORTHO05D004975 2.7e-56 221.9 120 85.8
Eucgr.G02225 Eucalyptus grandis HOM05D004197 ORTHO05D004975 2.7e-56 221.9 120 85.0
CiPaw.11G096400 Carya illinoinensis HOM05D004197 ORTHO05D004975 4.6e-56 221.1 120 84.2
HPP92_007604 Vanilla planifolia HOM05D004197 ORTHO05D004975 6.0e-56 220.7 120 85.8
arahy.Tifrunner.gnm1.ann1.4JR04K Arachis hypogaea HOM05D004197 ORTHO05D004975 7.9e-56 220.3 120 87.5
arahy.Tifrunner.gnm1.ann1.5DCW4K Arachis hypogaea HOM05D004197 ORTHO05D004975 7.9e-56 220.3 120 87.5
Hma1.2p1_0307F.1_g119895 Hydrangea macrophylla HOM05D004197 ORTHO05D004975 7.9e-56 220.3 120 85.8
arahy.Tifrunner.gnm1.ann1.E9H45Q Arachis hypogaea HOM05D004197 ORTHO05D004975 1.0e-55 219.9 119 87.4
Atru.chr4.2919 Acer truncatum HOM05D004197 ORTHO05D004975 1.8e-55 219.2 120 85.0
CSS0039414 Camellia sinensis var. sinensis HOM05D004197 ORTHO05D004975 2.3e-55 218.8 120 85.0
CSS0047181 Camellia sinensis var. sinensis HOM05D004197 ORTHO05D004975 2.3e-55 218.8 120 85.0
Aqoxy7G00569 Aquilegia oxysepala HOM05D004197 ORTHO05D004975 3.0e-55 218.4 120 85.0
CDE02G1869 Ceratophyllum demersum HOM05D004197 ORTHO05D004975 3.0e-55 218.4 119 83.2
Ah.13g073520 Amaranthus hybridus HOM05D004197 ORTHO05D004975 3.9e-55 218.0 118 86.4
Thecc.04G166300 Theobroma cacao HOM05D004197 ORTHO05D004975 3.9e-55 218.0 120 84.2
Cfa015042 Carpinus fangiana HOM05D004197 ORTHO05D004975 5.1e-55 217.6 120 82.5
TWI32G1250 Tripterygium wilfordii HOM05D004197 ORTHO05D004975 5.1e-55 217.6 120 84.2
Cpa.g.sc10.180 Carica papaya HOM05D004197 ORTHO05D004975 6.7e-55 217.2 120 85.0
Glyma.05G102000 Glycine max HOM05D004197 ORTHO05D004975 6.7e-55 217.2 120 84.2
CiPaw.12G066300 Carya illinoinensis HOM05D004197 ORTHO05D004975 1.1e-54 216.5 120 81.7
AUR62023799 Chenopodium quinoa HOM05D004197 ORTHO05D004975 1.1e-54 216.5 118 85.6
Duzib151G0052 Durio zibethinus HOM05D004197 ORTHO05D004975 1.1e-54 216.5 120 83.3
Dinv33200 Davidia involucrata HOM05D004197 ORTHO05D004975 1.5e-54 216.1 119 84.0
Gohir.A10G143100 Gossypium hirsutum HOM05D004197 ORTHO05D004975 1.5e-54 216.1 120 84.2
Gorai.011G136700 Gossypium raimondii HOM05D004197 ORTHO05D004975 1.5e-54 216.1 120 84.2
Gorai.012G053000 Gossypium raimondii HOM05D004197 ORTHO05D004975 1.5e-54 216.1 120 84.2
Rhsim03G0176800 Rhododendron simsii HOM05D004197 ORTHO05D004975 1.5e-54 216.1 119 84.0
Nn1g09691 Nelumbo nucifera HOM05D004197 ORTHO05D004975 1.9e-54 215.7 118 83.1
FvH4_7g06200 Fragaria vesca HOM05D004197 ORTHO05D004975 2.5e-54 215.3 120 85.0
Ciclev10022904m.g Citrus clementina HOM05D004197 ORTHO05D004975 4.3e-54 214.5 120 82.5
Gohir.A05G367700 Gossypium hirsutum HOM05D004197 ORTHO05D004975 4.3e-54 214.5 120 83.3
ATR0733G162 Amborella trichopoda HOM05D004197 ORTHO05D004975 5.7e-54 214.2 120 83.3
Duzib212G0574 Durio zibethinus HOM05D004197 ORTHO05D004975 5.7e-54 214.2 120 83.3
Gohir.D10G123800 Gossypium hirsutum HOM05D004197 ORTHO05D004975 5.7e-54 214.2 120 83.3
FAN01G1948 Fragaria x ananassa HOM05D004197 ORTHO05D004975 7.4e-54 213.8 120 84.2
FAN06G1493 Fragaria x ananassa HOM05D004197 ORTHO05D004975 7.4e-54 213.8 120 84.2
Gohir.D04G047600 Gossypium hirsutum HOM05D004197 ORTHO05D004975 7.4e-54 213.8 120 83.3
RcHm_v2.0_Chr1g0333831 Rosa chinensis HOM05D004197 ORTHO05D004975 9.7e-54 213.4 120 83.3
FAN03G3355 Fragaria x ananassa HOM05D004197 ORTHO05D004975 1.6e-53 212.6 120 83.3
Prupe.1G206900 Prunus persica HOM05D004197 ORTHO05D004975 1.6e-53 212.6 120 82.5
CARHR170020 Cardamine hirsuta HOM05D004197 ORTHO05D004975 2.8e-53 211.8 120 82.5
Aa31LG10G13940 Aethionema arabicum HOM05D004197 ORTHO05D004975 3.7e-53 211.5 120 82.5
AL5G41720 Arabidopsis lyrata HOM05D004197 ORTHO05D004975 3.7e-53 211.5 120 82.5
Carub.0005s2637 Capsella rubella HOM05D004197 ORTHO05D004975 3.7e-53 211.5 120 82.5
Os03g0207250 Oryza sativa ssp. japonica HOM05D004197 ORTHO05D004975 3.7e-53 211.5 118 82.2
AT3G59650 Arabidopsis thaliana HOM05D004197 ORTHO05D004975 4.8e-53 211.1 120 81.7
EL10Ac6g15364 Beta vulgaris HOM05D004197 ORTHO05D004975 8.2e-53 210.3 118 83.1
Zm00001eb400580 Zea mays HOM05D004197 ORTHO05D004975 1.4e-52 209.5 118 82.2
Thhalv10006316m.g Eutrema salsugineum HOM05D004197 ORTHO05D004975 4.1e-52 208.0 120 81.7
Sed0002539 Sechium edule HOM05D004197 ORTHO05D004975 4.1e-52 208.0 120 81.7
BcaC07g40496 Brassica carinata HOM05D004197 ORTHO05D004975 5.3e-52 207.6 120 80.8
A09p51920 Brassica napus HOM05D004197 ORTHO05D004975 5.3e-52 207.6 120 80.8
C08p34650 Brassica napus HOM05D004197 ORTHO05D004975 5.3e-52 207.6 120 80.8
BolC8t51067H Brassica oleracea HOM05D004197 ORTHO05D004975 5.3e-52 207.6 120 80.8
BraA09t40628Z Brassica rapa HOM05D004197 ORTHO05D004975 5.3e-52 207.6 120 80.8
BcaC08g44998 Brassica carinata HOM05D004197 ORTHO05D004975 6.9e-52 207.2 120 80.8
A07p24720 Brassica napus HOM05D000455 ORTHO05D000434 6.9e-52 207.2 120 80.8
C06p26290 Brassica napus HOM05D000455 ORTHO05D000434 6.9e-52 207.2 120 80.8
BolC6t37793H Brassica oleracea HOM05D004197 ORTHO05D004975 6.9e-52 207.2 120 80.8
BraA07t30117Z Brassica rapa HOM05D004197 ORTHO05D004975 6.9e-52 207.2 120 80.8
Sp5g03530 Schrenkiella parvula HOM05D004197 ORTHO05D004975 6.9e-52 207.2 120 80.8
TWI34G1638 Tripterygium wilfordii HOM05D004197 ORTHO05D004975 6.9e-52 207.2 144 72.2
BcaB02g07455 Brassica carinata HOM05D004197 ORTHO05D004975 9.0e-52 206.8 120 80.8
EL10Ac3g06082 Beta vulgaris HOM05D004197 ORTHO05D004975 2.0e-51 205.7 118 78.8
Manes.06G021100 Manihot esculenta HOM05D004197 ORTHO05D004975 2.0e-51 205.7 120 79.2
MD08G1230600 Malus domestica HOM05D004197 ORTHO05D004975 2.6e-51 205.3 117 79.5
QL04p073242 Quercus lobata HOM05D004197 ORTHO05D004975 2.6e-51 205.3 119 78.2
CDE09G0571 Ceratophyllum demersum HOM05D004197 ORTHO05D004975 3.4e-51 204.9 110 86.4
Phvul.010G124900 Phaseolus vulgaris HOM05D004197 ORTHO05D004975 4.5e-51 204.5 111 85.6
ClCG07G015230 Citrullus lanatus HOM05D004197 ORTHO05D004975 5.9e-51 204.1 120 79.2
PSO832G1844 Papaver somniferum HOM05D004197 ORTHO05D004975 5.9e-51 204.1 119 80.7
Potri.013G126200 Populus trichocarpa HOM05D004197 ORTHO05D004975 1.3e-50 203.0 120 78.3
CANSAT80G2644 Cannabis sativa HOM05D004197 ORTHO05D004975 1.7e-50 202.6 120 80.0
Hund04335 Selenicereus undatus HOM05D004197 ORTHO05D004975 1.7e-50 202.6 118 79.7
TAR629G0957 Trochodendron aralioides HOM05D004197 ORTHO05D004975 5.0e-50 201.1 118 81.4
PSO017G5565 Papaver somniferum HOM05D004197 ORTHO05D004975 6.5e-50 200.7 119 79.0
PSO675G0737 Papaver somniferum HOM05D004197 ORTHO05D004975 6.5e-50 200.7 119 79.0
Cc02_g26370 Coffea canephora HOM05D004197 ORTHO05D004975 8.5e-50 200.3 118 79.7
THA.LOC104804007 Tarenaya hassleriana HOM05D004197 ORTHO05D004975 1.1e-49 199.9 118 78.0
MELO3C017759.2 Cucumis melo HOM05D004197 ORTHO05D004975 1.4e-49 199.5 120 77.5
CsaV3_4G002820 Cucumis sativus L. HOM05D004197 ORTHO05D004975 1.4e-49 199.5 120 76.7
Sp2g07880 Schrenkiella parvula HOM05D004197 ORTHO05D004975 2.5e-49 198.7 120 78.3
TAR362G0244 Trochodendron aralioides HOM05D000090 ORTHO05D001584 2.5e-49 198.7 111 83.8
Cc03_g14030 Coffea canephora HOM05D004197 ORTHO05D004975 3.2e-49 198.4 118 80.5
Migut.F01587 Erythranthe guttata HOM05D004197 ORTHO05D004975 4.2e-49 198.0 118 79.7
Peaxi162Scf00196g00222 Petunia axillaris HOM05D004197 ORTHO05D004975 4.2e-49 198.0 118 78.8
CAN.G525.23 Capsicum annuum HOM05D004197 ORTHO05D004975 5.5e-49 197.6 118 78.8
Nitab4.5_0007872g0010 Nicotiana tabacum HOM05D004197 ORTHO05D004975 5.5e-49 197.6 118 78.8
Oeu016610.1 Olea europaea HOM05D004197 ORTHO05D004975 5.5e-49 197.6 118 79.7
PSO591G0183 Papaver somniferum HOM05D004197 ORTHO05D004975 5.5e-49 197.6 119 78.2
MSTRG.27564 Avicennia marina HOM05D004197 ORTHO05D004975 9.4e-49 196.8 118 78.8
HanXRQChr10g0286001 Helianthus annuus HOM05D004197 ORTHO05D004975 9.4e-49 196.8 118 78.8
Lsat_1_v5_gn_6_33001 Lactuca sativa HOM05D004197 ORTHO05D004975 1.2e-48 196.4 118 80.5
Nitab4.5_0000902g0310 Nicotiana tabacum HOM05D004197 ORTHO05D004975 2.7e-48 195.3 118 78.0
ECA247G1539 Erigeron canadensis HOM05D004197 ORTHO05D004975 6.1e-48 194.1 115 81.7
ECA240G1468 Erigeron canadensis HOM05D004197 ORTHO05D004975 7.9e-48 193.7 118 78.0
Lsat_1_v5_gn_5_190681 Lactuca sativa HOM05D004197 ORTHO05D004975 3.0e-47 191.8 118 79.7
Actinidia11444 Actinidia chinensis HOM05D005056 ORTHO05D006487 3.9e-47 191.4 110 79.1
Solyc04g014390.3 Solanum lycopersicum HOM05D004197 ORTHO05D004975 3.9e-47 191.4 118 76.3
Sopen04g006520 Solanum pennellii HOM05D004197 ORTHO05D004975 3.9e-47 191.4 118 76.3
FAN24G1973 Fragaria x ananassa HOM05D004197 ORTHO05D004975 5.1e-47 191.0 110 82.7
FvH4_2g13530 Fragaria vesca HOM05D004197 ORTHO05D004975 1.1e-46 189.9 112 82.1
SalBow6G6028 Salvia bowleyana HOM05D004197 ORTHO05D004975 1.5e-46 189.5 118 76.3
PGSC0003DMG401023624 Solanum tuberosum HOM05D004197 ORTHO05D004975 5.7e-46 187.6 118 75.4
QL04p093649 Quercus lobata HOM05D004197 ORTHO05D004975 7.4e-46 187.2 111 76.6
unitig_899.g14470 Utricularia gibba HOM05D004197 ORTHO05D004975 8.2e-45 183.7 120 71.7
TAR493G0004 Trochodendron aralioides HOM05D004197 ORTHO05D004975 5.3e-44 181.0 107 82.2
arahy.Tifrunner.gnm1.ann1.XY21PC Arachis hypogaea HOM05D004197 ORTHO05D004975 5.9e-43 177.6 131 68.7
SGA_v2.0_scaffold49G18240 Striga asiatica HOM05D004197 ORTHO05D004975 1.1e-41 173.3 110 75.5
AUR62002389 Chenopodium quinoa HOM05D004197 ORTHO05D004975 3.2e-41 171.8 211 46.9
Lj3g0000340 Lotus japonicus HOM05D004197 ORTHO05D004975 3.2e-41 171.8 124 71.8
MBI11_g23942_MAGBIO Magnolia biondii HOM05D004197 ORTHO05D004975 2.1e-40 169.1 95 83.2
Gorai.004G083000 Gossypium raimondii HOM05D004197 ORTHO05D004975 6.1e-40 167.5 95 82.1
Atru.chr12.1301 Acer truncatum HOM05D004197 ORTHO05D004975 2.3e-39 165.6 91 83.5
C04p24770 Brassica napus HOM05D004197 ORTHO05D004975 3.0e-39 165.2 110 75.5
BolC4t23981H Brassica oleracea HOM05D004197 ORTHO05D004975 3.0e-39 165.2 110 75.5
Atru.chr12.1273 Acer truncatum HOM05D004197 ORTHO05D004975 6.7e-39 164.1 93 81.7
arahy.Tifrunner.gnm1.ann1.60591L Arachis hypogaea HOM05D004197 ORTHO05D004975 2.6e-38 162.2 136 66.2
BcaC02g10824 Brassica carinata HOM05D004197 ORTHO05D004975 2.6e-38 162.2 110 74.5
Mapoly0027s0066 Marchantia polymorpha HOM05D004197 ORTHO05D004975 2.6e-38 162.2 120 64.2
SEGI_18755 Sequoiadendron giganteum HOM05D004197 ORTHO05D004975 5.7e-38 161.0 118 61.0
Gohir.D08G078000 Gossypium hirsutum HOM05D004197 ORTHO05D004975 2.2e-37 159.1 93 79.6
TPR.G31074 Trifolium pratense HOM05D004197 ORTHO05D006502 2.2e-37 159.1 94 79.8
Gohir.D10G075200 Gossypium hirsutum HOM05D004197 ORTHO05D004975 2.8e-37 158.7 91 80.2
Gohir.D02G135200 Gossypium hirsutum HOM05D004197 ORTHO05D004975 8.2e-37 157.1 91 80.2
Zm00001eb007240 Zea mays HOM05D004197 ORTHO05D004975 8.2e-37 157.1 89 80.9
Gorai.011G081000 Gossypium raimondii HOM05D004197 ORTHO05D004975 9.1e-36 153.7 91 79.1
Rhsim02G0084000 Rhododendron simsii HOM05D004197 ORTHO05D004975 1.5e-35 152.9 86 79.1
Gorai.005G151300 Gossypium raimondii HOM05D004197 ORTHO05D004975 2.6e-35 152.1 91 76.9
Sabra13G0105500 Salix brachista HOM05D004197 ORTHO05D004975 3.5e-35 151.8 169 49.7
Pp3c1_20100 Physcomitrium patens HOM05D004197 ORTHO05D004975 8.5e-34 147.1 120 56.7
HanXRQChr09g0264591 Helianthus annuus HOM05D004197 ORTHO05D004975 1.1e-33 146.7 92 76.1
SHI24203 Sapria himalayana HOM05D004197 ORTHO05D004975 1.1e-33 146.7 133 54.1
DCAR_029674 Daucus carota HOM05D004197 ORTHO05D004975 1.9e-33 146.0 89 78.7
Peaxi162Scf00474g00723 Petunia axillaris HOM05D004197 ORTHO05D004975 7.2e-33 144.1 118 62.7
DCAR_009572 Daucus carota HOM05D004197 ORTHO05D004975 9.4e-33 143.7 89 77.5
CARHR099320 Cardamine hirsuta HOM05D004197 ORTHO05D004975 1.0e-31 140.2 83 77.1
SalBow2G3321 Salvia bowleyana HOM05D004197 ORTHO05D004975 2.0e-30 136.0 89 74.2
Gohir.D08G220700 Gossypium hirsutum HOM05D004197 ORTHO05D004975 3.3e-30 135.2 77 81.8
unitig_736.g22525 Utricularia gibba HOM05D000398 ORTHO05D000551 1.2e-27 126.7 86 69.8
Hma1.2p1_0150F.1_g066800 Hydrangea macrophylla HOM05D004197 ORTHO05D004975 2.6e-27 125.6 62 93.5
Glyma.07G044001 Glycine max HOM05D004197 ORTHO05D004975 1.3e-26 123.2 91 69.2
SMO347G0376 Selaginella moellendorffii HOM05D004197 ORTHO05D004975 1.3e-26 123.2 118 50.0
arahy.Tifrunner.gnm1.ann1.GGUP18 Arachis hypogaea HOM05D004197 ORTHO05D004975 3.8e-26 121.7 62 90.3
COL.COLO4_08144 Corchorus olitorius HOM05D004197 ORTHO05D004975 3.8e-26 121.7 62 88.7
vmacro16589 Vaccinium macrocarpon HOM05D004197 ORTHO05D004975 8.5e-26 120.6 62 88.7
Lsat_1_v5_gn_6_23540 Lactuca sativa HOM05D004197 ORTHO05D004975 1.8e-23 112.8 95 62.1
Gorai.004G076200 Gossypium raimondii HOM05D004197 ORTHO05D004975 1.1e-20 103.6 120 48.3
Cre06.g270650 Chlamydomonas reinhardtii HOM05D004197 ORTHO05D004975 2.0e-19 99.4 108 43.5
arahy.Tifrunner.gnm1.ann1.HJ8Q1I Arachis hypogaea HOM05D004197 ORTHO05D004975 1.0e-18 97.1 57 77.2
Lsat_1_v5_gn_2_131080 Lactuca sativa HOM05D004197 ORTHO05D004975 3.2e-17 92.0 82 61.0
Gohir.D04G172540 Gossypium hirsutum HOM05D004197 ORTHO05D004975 9.4e-17 90.5 68 63.2
MCO09G643 Micromonas commoda HOM05D004197 ORTHO05D004975 1.2e-16 90.1 115 39.1
Gorai.012G161800 Gossypium raimondii HOM05D004197 ORTHO05D004975 4.7e-16 88.2 68 61.8
Actinidia27110 Actinidia chinensis HOM05D004197 ORTHO05D004975 9.8e-14 80.5 44 84.1
Gorai.004G234500 Gossypium raimondii HOM05D004197 ORTHO05D004975 2.8e-13 79.0 53 69.8
Thecc.10G088100 Theobroma cacao HOM05D004197 ORTHO05D004975 1.2e-06 57.0 35 77.1
arahy.Tifrunner.gnm1.ann1.HIJ85I Arachis hypogaea HOM05D004197 ORTHO05D087148 9.8e-06 53.9 29 89.7


User provided reference genes

Program Settings