Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_23330_v3 Cicer arietinum L. HOM05D006233 ORTHO05D007247 1.2e-68 263.1 135 100.0
Medtr8g017420 Medicago truncatula HOM05D006233 ORTHO05D007247 1.7e-59 232.6 135 86.7
Psat4g187760 Pisum sativum HOM05D006233 ORTHO05D007247 1.1e-58 229.9 127 93.7
TPR.G3185 Trifolium pratense HOM05D006233 ORTHO05D007247 5.6e-58 227.6 135 84.4
arahy.Tifrunner.gnm1.ann1.LDN3BT Arachis hypogaea HOM05D006233 ORTHO05D007247 7.1e-45 184.1 146 71.9
VMungo0331G0931 Vigna mungo HOM05D006233 ORTHO05D007247 1.3e-43 179.9 141 72.3
Actinidia26050 Actinidia chinensis HOM05D006233 ORTHO05D007247 6.6e-43 177.6 147 66.7
Atru.chr1.3781 Acer truncatum HOM05D006233 ORTHO05D007247 4.3e-42 174.9 142 69.7
Lj5g0016703 Lotus japonicus HOM05D006233 ORTHO05D007247 1.2e-41 173.3 148 66.9
Actinidia39105 Actinidia chinensis HOM05D006233 ORTHO05D007247 4.7e-41 171.4 150 64.0
Phvul.010G137600 Phaseolus vulgaris HOM05D006233 ORTHO05D007247 2.3e-40 169.1 142 69.7
MD09G1191200 Malus domestica HOM05D006233 ORTHO05D007247 8.9e-40 167.2 150 65.3
Cfa003566 Carpinus fangiana HOM05D006233 ORTHO05D007247 3.4e-39 165.2 148 64.9
Glyma.08G191600 Glycine max HOM05D006233 ORTHO05D007247 3.4e-39 165.2 135 70.4
Manes.04G140700 Manihot esculenta HOM05D006233 ORTHO05D007247 3.4e-39 165.2 148 66.2
MD17G1173900 Malus domestica HOM05D006233 ORTHO05D007247 9.9e-39 163.7 150 64.7
Glyma.07G008600 Glycine max HOM05D006233 ORTHO05D007247 1.3e-38 163.3 136 70.6
Manes.11G024800 Manihot esculenta HOM05D006233 ORTHO05D007247 1.3e-38 163.3 148 66.2
Ciclev10026736m.g Citrus clementina HOM05D006233 ORTHO05D007247 2.2e-38 162.5 140 65.0
CsaV3_3G043640 Cucumis sativus L. HOM05D006233 ORTHO05D007247 2.2e-38 162.5 149 63.8
Lj5A43T71 Lonicera japonica HOM05D006233 ORTHO05D007247 2.9e-38 162.2 160 60.6
Gohir.D06G199600 Gossypium hirsutum HOM05D006233 ORTHO05D007247 4.9e-38 161.4 148 62.2
CiPaw.02G138900 Carya illinoinensis HOM05D006233 ORTHO05D007247 6.4e-38 161.0 148 64.2
Prupe.3G047000 Prunus persica HOM05D006233 ORTHO05D007247 6.4e-38 161.0 150 64.0
Gohir.A06G191200 Gossypium hirsutum HOM05D006233 ORTHO05D007247 1.1e-37 160.2 151 62.3
Gorai.010G232600 Gossypium raimondii HOM05D006233 ORTHO05D007247 1.1e-37 160.2 148 61.5
CiPaw.01G223500 Carya illinoinensis HOM05D006233 ORTHO05D007247 1.4e-37 159.8 147 60.5
MELO3C013069.2 Cucumis melo HOM05D006233 ORTHO05D007247 1.4e-37 159.8 149 63.1
FvH4_6g33800 Fragaria vesca HOM05D006233 ORTHO05D007247 1.9e-37 159.5 152 61.8
FAN14G4045 Fragaria x ananassa HOM05D006233 ORTHO05D007247 1.9e-37 159.5 152 61.8
Lalb_Chr25g0280771 Lupinus albus HOM05D006233 ORTHO05D007247 2.4e-37 159.1 138 65.9
CANSAT56G1839 Cannabis sativa HOM05D006233 ORTHO05D007247 4.1e-37 158.3 149 61.7
Dinv04018 Davidia involucrata HOM05D006233 ORTHO05D007247 4.1e-37 158.3 145 62.8
FAN09G3309 Fragaria x ananassa HOM05D006233 ORTHO05D007247 2.1e-36 156.0 152 60.5
Hma1.2p1_1128F.1_g259780 Hydrangea macrophylla HOM05D006233 ORTHO05D007247 2.7e-36 155.6 149 59.7
Sed0001061 Sechium edule HOM05D006233 ORTHO05D007247 3.5e-36 155.2 149 64.4
Dinv37902 Davidia involucrata HOM05D006233 ORTHO05D007247 6.0e-36 154.5 138 63.8
RcHm_v2.0_Chr2g0143671 Rosa chinensis HOM05D006233 ORTHO05D007247 6.0e-36 154.5 152 59.9
Cpa.g.sc25.68 Carica papaya HOM05D006233 ORTHO05D007247 1.0e-35 153.7 148 62.2
Lj5A42T58 Lonicera japonica HOM05D006233 ORTHO05D007247 1.0e-35 153.7 103 75.7
FAN05G2224 Fragaria x ananassa HOM05D006233 ORTHO05D007247 1.3e-35 153.3 152 59.2
Carub.0003s1344 Capsella rubella HOM05D006233 ORTHO05D007247 2.3e-35 152.5 151 61.6
Haze_15979 Corylus avellana HOM05D006233 ORTHO05D007247 2.3e-35 152.5 172 57.6
TWI63G1789 Tripterygium wilfordii HOM05D006233 ORTHO05D007247 2.3e-35 152.5 148 60.1
Migut.D00962 Erythranthe guttata HOM05D006233 ORTHO05D007247 1.1e-34 150.2 158 58.9
Aqoxy7G01184 Aquilegia oxysepala HOM05D006233 ORTHO05D007247 1.5e-34 149.8 144 59.0
Aa31LG8G1060 Aethionema arabicum HOM05D006233 ORTHO05D007247 1.9e-34 149.4 150 59.3
ClCG07G013950 Citrullus lanatus HOM05D006233 ORTHO05D007247 1.9e-34 149.4 145 60.0
AL3G26050 Arabidopsis lyrata HOM05D006233 ORTHO05D007247 4.3e-34 148.3 151 60.3
AT3G13882 Arabidopsis thaliana HOM05D006233 ORTHO05D007247 5.6e-34 147.9 151 59.6
Thecc.06G113700 Theobroma cacao HOM05D006233 ORTHO05D007247 7.3e-34 147.5 147 60.5
Sp3g12110 Schrenkiella parvula HOM05D006233 ORTHO05D007247 9.6e-34 147.1 152 59.2
TWI38G0279 Tripterygium wilfordii HOM05D006233 ORTHO05D007247 1.6e-33 146.4 148 58.8
BcaC05g29149 Brassica carinata HOM05D006233 ORTHO05D007247 3.6e-33 145.2 150 60.0
C05p53920 Brassica napus HOM05D006233 ORTHO05D007247 3.6e-33 145.2 150 60.0
ECA234G2580 Erigeron canadensis HOM05D006233 ORTHO05D007247 3.6e-33 145.2 148 57.4
arahy.Tifrunner.gnm1.ann1.9P6A99 Arachis hypogaea HOM05D006233 ORTHO05D007247 8.1e-33 144.1 118 68.6
Thhalv10021711m.g Eutrema salsugineum HOM05D006233 ORTHO05D007247 8.1e-33 144.1 150 58.0
A03p38490 Brassica napus HOM05D006233 ORTHO05D007247 1.4e-32 143.3 152 59.2
CARHR088680 Cardamine hirsuta HOM05D006233 ORTHO05D007247 1.8e-32 142.9 152 59.2
BolC3t16928H Brassica oleracea HOM05D006233 ORTHO05D007247 2.4e-32 142.5 151 57.6
COL.COLO4_38606 Corchorus olitorius HOM05D006233 ORTHO05D007247 2.4e-32 142.5 147 57.1
BcaB04g18809 Brassica carinata HOM05D006233 ORTHO05D007247 4.0e-32 141.7 150 58.0
BcaB06g25428 Brassica carinata HOM05D006233 ORTHO05D007247 5.2e-32 141.4 151 57.6
CDE03G0127 Ceratophyllum demersum HOM05D006233 ORTHO05D007247 5.2e-32 141.4 145 60.7
BcaC01g03969 Brassica carinata HOM05D006233 ORTHO05D007247 8.9e-32 140.6 151 57.6
C03p46650 Brassica napus HOM05D006233 ORTHO05D007247 8.9e-32 140.6 151 57.0
Cc04_g01780 Coffea canephora HOM05D006233 ORTHO05D007247 8.9e-32 140.6 146 56.8
PSO210G1065 Papaver somniferum HOM05D006233 ORTHO05D007247 8.9e-32 140.6 147 53.1
Potri.003G041100 Populus trichocarpa HOM05D006233 ORTHO05D007247 1.2e-31 140.2 141 56.7
Peaxi162Scf00207g01343 Petunia axillaris HOM05D006233 ORTHO05D007247 2.0e-31 139.4 145 56.6
GSVIVG01016799001 Vitis vinifera HOM05D006233 ORTHO05D007247 2.0e-31 139.4 153 56.9
Nn6g35511 Nelumbo nucifera HOM05D006233 ORTHO05D007247 5.8e-31 137.9 143 55.2
Nitab4.5_0000255g0250 Nicotiana tabacum HOM05D006233 ORTHO05D007247 5.8e-31 137.9 143 58.0
Eucgr.F03142 Eucalyptus grandis HOM05D006233 ORTHO05D007247 7.6e-31 137.5 148 56.1
PGSC0003DMG400004851 Solanum tuberosum HOM05D006233 ORTHO05D007247 7.6e-31 137.5 147 56.5
Sopen06g022210 Solanum pennellii HOM05D006233 ORTHO05D007247 9.9e-31 137.1 147 56.5
HanXRQChr10g0312401 Helianthus annuus HOM05D006233 ORTHO05D007247 1.3e-30 136.7 149 55.7
MSTRG.9502 Avicennia marina HOM05D006233 ORTHO05D007247 1.7e-30 136.3 151 58.9
PSO210G5036 Papaver somniferum HOM05D006233 ORTHO05D007247 1.7e-30 136.3 143 53.8
BraA03t13001Z Brassica rapa HOM05D006233 ORTHO05D007247 2.2e-30 136.0 153 58.2
PGR119G1625 Punica granatum HOM05D006233 ORTHO05D007247 2.2e-30 136.0 150 53.3
Nitab4.5_0005918g0010 Nicotiana tabacum HOM05D006233 ORTHO05D007247 2.9e-30 135.6 143 57.3
SGA_v2.0_scaffold4G02044 Striga asiatica HOM05D006233 ORTHO05D007247 4.9e-30 134.8 146 55.5
BraA03t12999Z Brassica rapa HOM05D006233 ORTHO05D007247 6.4e-30 134.4 155 55.5
Solyc06g062760.3 Solanum lycopersicum HOM05D006233 ORTHO05D007247 1.4e-29 133.3 147 55.1
MBI04_g36913_MAGBIO Magnolia biondii HOM05D006233 ORTHO05D007247 3.2e-29 132.1 143 51.0
THA.LOC104822640 Tarenaya hassleriana HOM05D006233 ORTHO05D007247 4.6e-28 128.3 172 51.2
AUR62038159 Chenopodium quinoa HOM05D006233 ORTHO05D007247 7.8e-28 127.5 160 51.9
EL10Ac7g16362 Beta vulgaris HOM05D006233 ORTHO05D007247 1.7e-27 126.3 161 50.3
AUR62009846 Chenopodium quinoa HOM05D006233 ORTHO05D007247 1.7e-27 126.3 157 52.9
FAN21G3416 Fragaria x ananassa HOM05D006233 ORTHO05D007247 2.5e-26 122.5 127 55.9
Actinidia32155 Actinidia chinensis HOM05D006233 ORTHO05D007247 3.3e-26 122.1 149 54.4
BolC5t34058H Brassica oleracea HOM05D006233 ORTHO05D007247 4.3e-26 121.7 136 53.7
HanXRQChr04g0094941 Helianthus annuus HOM05D006233 ORTHO05D007247 1.8e-24 116.3 136 55.9
Hund20828 Selenicereus undatus HOM05D006233 ORTHO05D007247 1.8e-24 116.3 168 48.2
Duzib192G0098 Durio zibethinus HOM05D006233 ORTHO05D007247 4.0e-24 115.2 123 54.5
Rhsim08G0234900 Rhododendron simsii HOM05D006233 ORTHO05D007247 2.0e-23 112.8 131 54.2
Os01g0571200 Oryza sativa ssp. japonica HOM05D006233 ORTHO05D007247 7.6e-23 110.9 147 46.3
Zm00001eb160070 Zea mays HOM05D006233 ORTHO05D007247 2.9e-22 109.0 139 47.5
FAN11G2894 Fragaria x ananassa HOM05D000283 ORTHO05D007247 2.1e-20 102.8 134 50.7
ATR0789G010 Amborella trichopoda HOM05D006233 ORTHO05D007247 6.0e-20 101.3 79 64.6
unitig_8.g4463 Utricularia gibba HOM05D006233 ORTHO05D007247 3.9e-19 98.6 118 52.5
A03p38520 Brassica napus HOM05D006233 ORTHO05D007247 5.1e-19 98.2 125 51.2
Lsat_1_v5_gn_5_135041 Lactuca sativa HOM05D006233 ORTHO05D007247 1.1e-18 97.1 123 50.4
Nn8g38812 Nelumbo nucifera HOM05D006233 ORTHO05D007247 1.3e-17 93.6 123 49.6
SGA_v2.0_scaffold68G22913 Striga asiatica HOM05D006233 ORTHO05D007247 1.6e-17 93.2 124 47.6
CDE06G1672 Ceratophyllum demersum HOM05D006233 ORTHO05D007247 9.9e-15 84.0 115 52.2
BcaC05g29150 Brassica carinata HOM05D006233 ORTHO05D007247 1.7e-14 83.2 136 46.3
HPP92_007656 Vanilla planifolia HOM05D006233 ORTHO05D007247 1.1e-13 80.5 121 38.8
Zm00001eb357240 Zea mays HOM05D006233 ORTHO05D007247 2.4e-13 79.3 118 41.5
BraA05t22362Z Brassica rapa HOM05D006233 ORTHO05D007247 1.2e-12 77.0 173 38.2
Pp3c4_29560 Physcomitrium patens HOM05D006233 ORTHO05D007247 1.2e-12 77.0 76 56.6
CBR_g8600 Chara braunii HOM05D006233 ORTHO05D007247 7.4e-10 67.8 54 59.3
AagrBONN_evm.TU.Sc2ySwM_368.223 Anthoceros agrestis HOM05D003143 ORTHO05D003628 9.6e-10 67.4 56 60.7
CSS0050466 Camellia sinensis var. sinensis HOM05D006233 ORTHO05D007247 2.8e-09 65.9 92 51.1
QL05p010226 Quercus lobata HOM05D006233 ORTHO05D007247 6.2e-09 64.7 95 49.5
Mapoly0016s0011 Marchantia polymorpha HOM05D006233 ORTHO05D007247 8.2e-09 64.3 53 58.5
Nn1g01194 Nelumbo nucifera HOM05D006233 ORTHO05D007247 1.1e-08 63.9 50 66.0
QL05p010144 Quercus lobata HOM05D006233 ORTHO05D007247 1.1e-08 63.9 94 50.0
Ca_29232_v3 Cicer arietinum L. HOM05D006233 ORTHO05D007247 1.5e-07 60.1 42 69.0
MCO16G417 Micromonas commoda HOM05D003208 ORTHO05D004103 3.4e-07 58.9 51 56.9
CSS0050070 Camellia sinensis var. sinensis HOM05D041584 ORTHO05D007247 5.8e-07 58.2 33 75.8
A05p35530 Brassica napus HOM05D006233 ORTHO05D007247 1.3e-06 57.0 91 41.8
RcHm_v2.0_Chr5g0063721 Rosa chinensis HOM05D006233 ORTHO05D007247 1.3e-06 57.0 93 44.1
Sed0004594 Sechium edule HOM05D006233 ORTHO05D007247 1.7e-06 56.6 91 48.4
vmacro18776 Vaccinium macrocarpon HOM05D006233 ORTHO05D007247 2.9e-06 55.8 92 43.5


User provided reference genes

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