Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_23294_v3 Cicer arietinum L. HOM05D005017 ORTHO05D006044 1.4e-131 473.0 254 100.0
Psat4g194480 Pisum sativum HOM05D005017 ORTHO05D006044 2.3e-113 412.5 257 90.3
TPR.G8766 Trifolium pratense HOM05D005017 ORTHO05D006044 5.1e-113 411.4 255 88.6
Medtr8g015590 Medicago truncatula HOM05D005017 ORTHO05D006044 2.8e-111 405.6 257 89.1
Glyma.07G012600 Glycine max HOM05D005017 ORTHO05D006044 2.7e-106 389.0 256 85.2
Glyma.08G196300 Glycine max HOM05D005017 ORTHO05D006044 3.3e-104 382.1 255 82.7
Lj3g0014772 Lotus japonicus HOM05D005017 ORTHO05D006044 5.3e-102 374.8 256 82.0
Phvul.010G142100 Phaseolus vulgaris HOM05D005017 ORTHO05D006044 2.6e-101 372.5 251 81.3
VMungo0331G1330 Vigna mungo HOM05D005017 ORTHO05D006044 2.6e-101 372.5 256 81.6
CANSAT56G3588 Cannabis sativa HOM05D005017 ORTHO05D006044 5.5e-99 364.8 256 78.9
Lalb_Chr01g0013321 Lupinus albus HOM05D005017 ORTHO05D006044 2.3e-97 359.4 254 78.0
MD09G1196300 Malus domestica HOM05D005017 ORTHO05D006044 2.8e-95 352.4 255 74.1
Lalb_Chr04g0263111 Lupinus albus HOM05D005017 ORTHO05D006044 8.2e-95 350.9 256 76.2
MD17G1177100 Malus domestica HOM05D005017 ORTHO05D006044 2.4e-94 349.4 255 73.7
Prupe.3G052700 Prunus persica HOM05D005017 ORTHO05D006044 2.4e-94 349.4 253 74.7
Thecc.06G107700 Theobroma cacao HOM05D005017 ORTHO05D006044 2.4e-94 349.4 256 74.2
Duzib235G0510 Durio zibethinus HOM05D005017 ORTHO05D006044 5.3e-94 348.2 256 73.0
Gohir.A02G116100 Gossypium hirsutum HOM05D005017 ORTHO05D006044 2.6e-93 345.9 256 73.8
CiPaw.01G227300 Carya illinoinensis HOM05D005017 ORTHO05D006044 3.4e-93 345.5 256 75.0
ClCG09G000540 Citrullus lanatus HOM05D005017 ORTHO05D006044 3.4e-93 345.5 254 75.2
Manes.04G137400 Manihot esculenta HOM05D005017 ORTHO05D006044 7.7e-93 344.4 254 74.0
Sed0003007 Sechium edule HOM05D005017 ORTHO05D006044 1.3e-92 343.6 253 73.9
Gohir.D03G057100 Gossypium hirsutum HOM05D005017 ORTHO05D006044 2.9e-92 342.4 249 74.3
Potri.001G199500 Populus trichocarpa HOM05D005017 ORTHO05D006044 2.9e-92 342.4 254 70.9
Gorai.003G060200 Gossypium raimondii HOM05D005017 ORTHO05D006044 6.5e-92 341.3 249 73.9
Dinv30400 Davidia involucrata HOM05D005017 ORTHO05D006044 1.9e-91 339.7 253 73.5
MELO3C024403.2 Cucumis melo HOM05D005017 ORTHO05D006044 4.2e-91 338.6 255 73.7
CsaV3_7G034910 Cucumis sativus L. HOM05D005017 ORTHO05D006044 4.2e-91 338.6 255 73.7
Actinidia21740 Actinidia chinensis HOM05D005017 ORTHO05D006044 1.6e-90 336.7 254 73.2
Atru.chr1.3634 Acer truncatum HOM05D005017 ORTHO05D006044 2.7e-90 335.9 250 74.0
CSS0030454 Camellia sinensis var. sinensis HOM05D005017 ORTHO05D006044 4.7e-90 335.1 249 74.7
Ciclev10026315m.g Citrus clementina HOM05D005017 ORTHO05D006044 7.9e-90 334.3 259 70.7
Nn8g38928 Nelumbo nucifera HOM05D005017 ORTHO05D006044 1.0e-89 334.0 255 71.4
Eucgr.F03103 Eucalyptus grandis HOM05D005017 ORTHO05D006044 1.8e-89 333.2 254 72.0
TAR624G0026 Trochodendron aralioides HOM05D005017 ORTHO05D006044 1.8e-89 333.2 256 69.9
MSTRG.22609 Avicennia marina HOM05D005017 ORTHO05D006044 2.3e-89 332.8 256 68.8
COL.COLO4_30606 Corchorus olitorius HOM05D005017 ORTHO05D006044 6.7e-89 331.3 255 71.0
Nitab4.5_0004848g0030 Nicotiana tabacum HOM05D005017 ORTHO05D006044 6.7e-89 331.3 249 71.5
Cpa.g.sc663.1 Carica papaya HOM05D005017 ORTHO05D006044 8.8e-89 330.9 255 72.2
SGA_v2.0_scaffold71G23756 Striga asiatica HOM05D005017 ORTHO05D006044 2.6e-88 329.3 256 68.8
AL1G59670 Arabidopsis lyrata HOM05D005017 ORTHO05D006044 4.4e-88 328.6 251 72.1
Potri.001G193700 Populus trichocarpa HOM05D005017 ORTHO05D006044 4.4e-88 328.6 254 69.3
Sopen03g040120 Solanum pennellii HOM05D005017 ORTHO05D006044 4.8e-87 325.1 249 71.9
AT1G51730 Arabidopsis thaliana HOM05D005017 ORTHO05D006044 1.1e-86 323.9 250 69.2
TWI79G0337 Tripterygium wilfordii HOM05D005017 ORTHO05D006044 2.4e-86 322.8 246 72.0
Dinv37934 Davidia involucrata HOM05D005017 ORTHO05D006044 3.1e-86 322.4 257 70.0
Migut.I00995 Erythranthe guttata HOM05D005017 ORTHO05D006044 4.1e-86 322.0 243 69.5
Nitab4.5_0006071g0010 Nicotiana tabacum HOM05D005017 ORTHO05D006044 4.1e-86 322.0 245 70.6
RcHm_v2.0_Chr2g0142451 Rosa chinensis HOM05D005017 ORTHO05D006044 5.3e-86 321.6 256 70.7
PGSC0003DMG401002511 Solanum tuberosum HOM05D005017 ORTHO05D006044 5.3e-86 321.6 249 71.5
HanXRQChr04g0095781 Helianthus annuus HOM05D005017 ORTHO05D006044 9.1e-86 320.9 254 68.5
GSVIVG01016892001 Vitis vinifera HOM05D005017 ORTHO05D006044 9.1e-86 320.9 247 72.5
PGR102G3241 Punica granatum HOM05D005017 ORTHO05D006044 1.6e-85 320.1 257 69.3
MBI01_g27633_MAGBIO Magnolia biondii HOM05D005017 ORTHO05D006044 2.6e-85 319.3 254 70.1
Rhsim08G0231100 Rhododendron simsii HOM05D005017 ORTHO05D006044 4.5e-85 318.5 267 68.9
arahy.Tifrunner.gnm1.ann1.TCAK26 Arachis hypogaea HOM05D005017 ORTHO05D006044 7.7e-85 317.8 254 69.7
CAN.G1668.3 Capsicum annuum HOM05D005017 ORTHO05D006044 1.0e-84 317.4 249 69.1
THA.LOC104817935 Tarenaya hassleriana HOM05D005017 ORTHO05D006044 1.3e-84 317.0 255 67.5
Sp1g38370 Schrenkiella parvula HOM05D005017 ORTHO05D006044 1.7e-84 316.6 254 68.5
FAN14G3976 Fragaria x ananassa HOM05D005017 ORTHO05D006044 2.2e-84 316.2 257 68.9
Ah.01g016970 Amaranthus hybridus HOM05D005017 ORTHO05D006044 2.9e-84 315.8 259 66.0
Atru.chr1.3630 Acer truncatum HOM05D005017 ORTHO05D006044 3.8e-84 315.5 245 72.7
arahy.Tifrunner.gnm1.ann1.ZK2LT4 Arachis hypogaea HOM05D005017 ORTHO05D006044 6.5e-84 314.7 254 68.9
Cc04_g02270 Coffea canephora HOM05D005017 ORTHO05D006044 6.5e-84 314.7 245 70.2
Hma1.2p1_0679F.1_g202280 Hydrangea macrophylla HOM05D005017 ORTHO05D006044 1.5e-83 313.5 249 69.1
Lsat_1_v5_gn_1_36441 Lactuca sativa HOM05D005017 ORTHO05D006044 3.2e-83 312.4 248 66.9
Thhalv10011475m.g Eutrema salsugineum HOM05D005017 ORTHO05D006044 4.2e-83 312.0 254 68.1
ECA247G1989 Erigeron canadensis HOM05D005017 ORTHO05D006044 7.2e-83 311.2 254 67.7
Solyc03g121310.2 Solanum lycopersicum HOM05D005017 ORTHO05D006044 2.7e-82 309.3 255 69.0
TWI31G0253 Tripterygium wilfordii HOM05D005017 ORTHO05D006044 2.7e-82 309.3 246 70.7
FAN09G3568 Fragaria x ananassa HOM05D005017 ORTHO05D006044 8.0e-82 307.8 257 67.7
Peaxi162Scf00038g01246 Petunia axillaris HOM05D005017 ORTHO05D006044 1.4e-81 307.0 212 71.2
EL10Ac9g21132 Beta vulgaris HOM05D005017 ORTHO05D006044 1.8e-81 306.6 243 68.7
AUR62038338 Chenopodium quinoa HOM05D005017 ORTHO05D006044 2.3e-81 306.2 246 69.1
FvH4_6g32940 Fragaria vesca HOM05D005017 ORTHO05D006044 3.0e-81 305.8 257 67.3
QL05p015800 Quercus lobata HOM05D005017 ORTHO05D006044 4.0e-81 305.4 347 55.0
AUR62023908 Chenopodium quinoa HOM05D005017 ORTHO05D006044 1.5e-80 303.5 246 68.3
Aa31LG10G3080 Aethionema arabicum HOM05D005017 ORTHO05D006044 2.6e-80 302.8 254 65.7
Lsat_1_v5_gn_5_133981 Lactuca sativa HOM05D005017 ORTHO05D006044 2.6e-80 302.8 247 66.0
C03p90280 Brassica napus HOM05D005017 ORTHO05D006044 7.5e-80 301.2 247 66.8
Carub.0001s4060 Capsella rubella HOM05D005017 ORTHO05D006044 7.5e-80 301.2 242 68.6
Aqoxy2G03852 Aquilegia oxysepala HOM05D005017 ORTHO05D006044 1.7e-79 300.1 258 67.4
DCAR_026373 Daucus carota HOM05D005017 ORTHO05D006044 2.2e-79 299.7 273 63.7
ATR0789G068 Amborella trichopoda HOM05D005017 ORTHO05D006044 3.7e-79 298.9 244 64.8
CARHR041890 Cardamine hirsuta HOM05D005017 ORTHO05D006044 1.4e-78 297.0 244 66.4
Sc12g0009900 Simmondsia chinensis HOM05D005017 ORTHO05D006044 4.1e-78 295.4 214 68.7
A08p02530 Brassica napus HOM05D005017 ORTHO05D006044 5.3e-78 295.0 247 65.6
HanXRQChr12g0360701 Helianthus annuus HOM05D005017 ORTHO05D006044 2.0e-77 293.1 247 62.3
Cfa003607 Carpinus fangiana HOM05D005017 ORTHO05D006044 1.0e-76 290.8 228 69.3
Os01g0558300 Oryza sativa ssp. japonica HOM05D005017 ORTHO05D006044 1.3e-76 290.4 247 64.8
SEGI_04320 Sequoiadendron giganteum HOM05D005017 ORTHO05D006044 1.7e-76 290.0 247 64.0
BraA08t32293Z Brassica rapa HOM05D005017 ORTHO05D006044 5.0e-76 288.5 238 66.8
PSO210G2569 Papaver somniferum HOM05D005017 ORTHO05D006044 1.5e-75 287.0 252 65.5
BolC3t21350H Brassica oleracea HOM05D005017 ORTHO05D006044 4.2e-75 285.4 246 65.4
Lj5C49T18 Lonicera japonica HOM05D005017 ORTHO05D006044 4.2e-75 285.4 194 72.7
A05p19400 Brassica napus HOM05D005017 ORTHO05D006044 7.2e-75 284.6 236 64.4
BolC6t36489H Brassica oleracea HOM05D005017 ORTHO05D006044 1.2e-74 283.9 237 64.6
BcaC01g01293 Brassica carinata HOM05D005017 ORTHO05D006044 1.6e-74 283.5 261 60.9
Zm00001eb162290 Zea mays HOM05D005017 ORTHO05D006044 4.7e-74 282.0 248 64.9
Ah.01g004460 Amaranthus hybridus HOM05D005017 ORTHO05D006044 6.1e-74 281.6 297 56.9
HPP92_023230 Vanilla planifolia HOM05D005017 ORTHO05D006044 8.0e-74 281.2 248 62.1
CDE05G2485 Ceratophyllum demersum HOM05D005017 ORTHO05D006044 8.8e-73 277.7 243 62.1
BraA05t20844Z Brassica rapa HOM05D005017 ORTHO05D006044 1.2e-72 277.3 243 62.6
Mapoly0076s0035 Marchantia polymorpha HOM05D005017 ORTHO05D006044 9.8e-72 274.2 252 60.7
BcaC08g43934 Brassica carinata HOM05D005017 ORTHO05D006044 2.8e-71 272.7 245 61.6
C06p13290 Brassica napus HOM05D005017 ORTHO05D006044 6.3e-71 271.6 243 61.7
FAN05G4929 Fragaria x ananassa HOM05D005017 ORTHO05D006044 7.0e-70 268.1 334 50.9
vmacro18822 Vaccinium macrocarpon HOM05D005017 ORTHO05D006044 2.0e-69 266.5 278 61.5
Pp3c27_5930 Physcomitrium patens HOM05D005017 ORTHO05D006044 6.8e-65 251.5 248 58.5
SalBow6G5092 Salvia bowleyana HOM05D005017 ORTHO05D006044 7.5e-64 248.1 252 58.7
unitig_0.g2868 Utricularia gibba HOM05D005017 ORTHO05D006044 4.9e-63 245.4 254 57.9
Sabra01G0156200 Salix brachista HOM05D000200 ORTHO05D000262 1.1e-62 244.2 290 51.0
Haze_15918 Corylus avellana HOM05D005017 ORTHO05D006044 9.2e-62 241.1 178 72.5
ECA234G0069 Erigeron canadensis HOM05D005017 ORTHO05D006044 5.9e-61 238.4 251 55.8
Pp3c5_13990 Physcomitrium patens HOM05D005017 ORTHO05D006044 5.9e-61 238.4 250 53.6
SGA_v2.0_scaffold45G16987 Striga asiatica HOM05D005017 ORTHO05D006044 5.9e-61 238.4 246 58.1
Actinidia32130 Actinidia chinensis HOM05D005017 ORTHO05D006044 6.8e-57 224.9 243 56.4
SMO300G0020 Selaginella moellendorffii HOM05D005017 ORTHO05D006044 2.0e-56 223.4 248 55.6
Gohir.A05G133633 Gossypium hirsutum HOM05D005017 ORTHO05D006044 7.5e-56 221.5 253 54.2
CBR_g78883 Chara braunii HOM05D005017 ORTHO05D006044 9.2e-54 214.5 232 52.6
CSS0006284 Camellia sinensis var. sinensis HOM05D005017 ORTHO05D006044 7.8e-53 211.5 148 71.6
Zm00001eb356680 Zea mays HOM05D005017 ORTHO05D006044 2.3e-52 209.9 247 53.4
Lj9A517T55 Lonicera japonica HOM05D005017 ORTHO05D006044 3.3e-51 206.1 214 53.3
BcaB07g33629 Brassica carinata HOM05D005017 ORTHO05D006044 2.2e-47 193.4 166 69.9
Oeu052817.1 Olea europaea HOM05D005017 ORTHO05D006044 4.1e-46 189.1 136 70.6
Gorai.009G139400 Gossypium raimondii HOM05D005017 ORTHO05D006044 1.3e-44 184.1 131 71.0
PSO170G1437 Papaver somniferum HOM05D005017 ORTHO05D006044 9.5e-43 177.9 145 66.2
Hma1.2p1_0679F.1_g202290 Hydrangea macrophylla HOM05D005017 ORTHO05D006044 4.7e-42 175.6 149 69.1
Gohir.D05G135550 Gossypium hirsutum HOM05D005017 ORTHO05D006044 1.9e-38 163.7 140 63.6
Duzib192G1032 Durio zibethinus HOM05D005017 ORTHO05D006044 1.6e-37 160.6 256 41.4
Cre03.g201776 Chlamydomonas reinhardtii HOM05D005017 ORTHO05D006044 1.6e-34 150.6 226 41.2
BcaB02g11274 Brassica carinata HOM05D005017 ORTHO05D006044 1.4e-33 147.5 190 46.8
A06p02280 Brassica napus HOM05D005017 ORTHO05D006044 1.8e-33 147.1 194 51.0
FAN02G2875 Fragaria x ananassa HOM05D005017 ORTHO05D006044 3.1e-33 146.4 342 38.3
PRCOL_00005001 Prasinoderma coloniale HOM05D005017 ORTHO05D006044 1.2e-29 134.4 274 33.6
Oeu052818.1 Olea europaea HOM05D005017 ORTHO05D006044 1.1e-27 127.9 120 64.2
MCO07G323 Micromonas commoda HOM05D005017 ORTHO05D006044 1.9e-27 127.1 240 35.4
Aa31csc1849G10 Aethionema arabicum HOM05D005017 ORTHO05D006044 9.6e-27 124.8 110 61.8
PSO782G0965 Papaver somniferum HOM05D005017 ORTHO05D006044 1.1e-22 111.3 92 60.9
Aa31LG1G17240 Aethionema arabicum HOM05D005017 ORTHO05D006044 2.7e-21 106.7 60 78.3
Oeu026734.1 Olea europaea HOM05D005017 ORTHO05D006044 7.8e-21 105.1 71 73.2
PSO675G1433 Papaver somniferum HOM05D005017 ORTHO05D006044 4.8e-18 95.9 79 59.5
PSO135G0227 Papaver somniferum HOM05D005017 ORTHO05D006044 6.2e-18 95.5 79 60.8
CSS0004179 Camellia sinensis var. sinensis HOM05D005017 ORTHO05D006044 7.9e-13 78.6 78 70.5
Cfa022882 Carpinus fangiana HOM05D005017 ORTHO05D006044 3.3e-11 73.2 161 34.8
Pp3c6_13820 Physcomitrium patens HOM05D005017 ORTHO05D006044 2.4e-09 67.0 212 29.2
Hund07663 Selenicereus undatus HOM05D001165 ORTHO05D010360 4.9e-07 59.3 53 60.4
TAR383G0476 Trochodendron aralioides HOM05D005017 ORTHO05D006044 3.2e-06 56.6 34 70.6


User provided reference genes

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