Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_23237_v3 Cicer arietinum L. HOM05D005051 ORTHO05D005945 4.1e-167 591.3 289 100.0
Ca_23236_v3 Cicer arietinum L. HOM05D005051 ORTHO05D005945 1.4e-127 459.9 322 74.5
TPR.G17135 Trifolium pratense HOM05D005051 ORTHO05D005945 2.4e-114 416.0 323 68.1
Lj3g0013392 Lotus japonicus HOM05D005051 ORTHO05D005945 6.4e-112 407.9 323 66.6
Medtr8g013045 Medicago truncatula HOM05D005051 ORTHO05D005945 3.9e-109 398.7 321 67.0
Psat4g199920 Pisum sativum HOM05D005051 ORTHO05D005945 2.0e-105 386.3 323 64.4
arahy.Tifrunner.gnm1.ann1.8DP3DE Arachis hypogaea HOM05D005051 ORTHO05D005945 1.2e-102 377.1 320 61.6
Glyma.16G101100 Glycine max HOM05D005051 ORTHO05D005945 7.9e-102 374.4 321 62.3
arahy.Tifrunner.gnm1.ann1.SK15G6 Arachis hypogaea HOM05D005051 ORTHO05D005945 1.3e-101 373.6 320 60.9
Glyma.03G064400 Glycine max HOM05D005051 ORTHO05D005945 5.1e-101 371.7 319 62.1
Lalb_Chr13g0291091 Lupinus albus HOM05D005051 ORTHO05D005945 4.3e-100 368.6 319 62.1
Medtr8g013050 Medicago truncatula HOM05D005051 ORTHO05D005945 2.8e-99 365.9 320 61.9
Phvul.010G020500 Phaseolus vulgaris HOM05D005051 ORTHO05D005945 4.8e-99 365.2 319 61.1
VMungo1309G1922 Vigna mungo HOM05D005051 ORTHO05D005945 1.2e-97 360.5 322 60.2
Haze_24821 Corylus avellana HOM05D005051 ORTHO05D005945 4.1e-90 335.5 324 55.6
Cfa002585 Carpinus fangiana HOM05D005051 ORTHO05D005945 1.2e-89 334.0 324 55.6
QL09p053053 Quercus lobata HOM05D005051 ORTHO05D005945 1.0e-85 320.9 324 53.4
Manes.13G046400 Manihot esculenta HOM05D005051 ORTHO05D005945 1.4e-85 320.5 321 52.6
Atru.chr6.1506 Acer truncatum HOM05D005051 ORTHO05D005945 1.5e-84 317.0 323 52.0
QL09p052190 Quercus lobata HOM05D005051 ORTHO05D005945 2.0e-84 316.6 324 53.1
CiPaw.03G147700 Carya illinoinensis HOM05D005051 ORTHO05D005945 2.8e-83 312.8 324 53.1
PGR083G2429 Punica granatum HOM05D005051 ORTHO05D005945 3.1e-82 309.3 322 52.8
Duzib138G1384 Durio zibethinus HOM05D005051 ORTHO05D005945 9.1e-82 307.8 319 52.7
MD13G1217900 Malus domestica HOM05D005051 ORTHO05D005945 2.0e-81 306.6 315 52.1
Gohir.D07G164100 Gossypium hirsutum HOM05D005051 ORTHO05D005945 2.6e-81 306.2 323 51.4
Potri.014G190600 Populus trichocarpa HOM05D005051 ORTHO05D005945 2.6e-81 306.2 312 52.6
Gorai.001G188000 Gossypium raimondii HOM05D005051 ORTHO05D005945 3.4e-81 305.8 323 51.4
Ciclev10019161m.g Citrus clementina HOM05D005051 ORTHO05D005945 7.7e-81 304.7 323 51.1
Sabra14G0142400 Salix brachista HOM05D005051 ORTHO05D005945 7.7e-81 304.7 316 51.9
Dinv19188 Davidia involucrata HOM05D005051 ORTHO05D005945 1.0e-80 304.3 324 52.2
FAN24G2416 Fragaria x ananassa HOM05D005051 ORTHO05D005945 1.3e-80 303.9 323 51.4
FvH4_2g18730 Fragaria vesca HOM05D005051 ORTHO05D005945 2.9e-80 302.8 323 51.4
Duzib211G0096 Durio zibethinus HOM05D005051 ORTHO05D005945 3.8e-80 302.4 323 50.5
Gohir.A07G158000 Gossypium hirsutum HOM05D005051 ORTHO05D005945 2.5e-79 299.7 311 52.1
FAN27G0551 Fragaria x ananassa HOM05D005051 ORTHO05D005945 3.2e-79 299.3 323 51.1
Actinidia30063 Actinidia chinensis HOM05D005051 ORTHO05D005945 4.2e-79 298.9 324 50.0
TWI36G0473 Tripterygium wilfordii HOM05D005051 ORTHO05D005945 4.2e-79 298.9 324 50.0
COL.COLO4_15648 Corchorus olitorius HOM05D005051 ORTHO05D005945 2.7e-78 296.2 322 50.3
RcHm_v2.0_Chr6g0284351 Rosa chinensis HOM05D005051 ORTHO05D005945 7.9e-78 294.7 323 50.2
Eucgr.E03305 Eucalyptus grandis HOM05D005051 ORTHO05D005945 2.3e-77 293.1 323 49.5
Thecc.01G222800 Theobroma cacao HOM05D005051 ORTHO05D005945 3.0e-77 292.7 326 50.3
Cpa.g.sc8.135 Carica papaya HOM05D005051 ORTHO05D005945 3.9e-77 292.4 324 49.7
TAR365G1079 Trochodendron aralioides HOM05D005051 ORTHO05D005945 3.9e-77 292.4 324 50.0
Cc01_g16860 Coffea canephora HOM05D005051 ORTHO05D005945 1.5e-76 290.4 328 47.3
MELO3C021052.2 Cucumis melo HOM05D005051 ORTHO05D005945 1.5e-76 290.4 325 48.3
vmacro02772 Vaccinium macrocarpon HOM05D005051 ORTHO05D005945 3.3e-76 289.3 324 48.1
CSS0047345 Camellia sinensis var. sinensis HOM05D005051 ORTHO05D005945 9.7e-76 287.7 324 49.1
Gohir.A11G139100 Gossypium hirsutum HOM05D005051 ORTHO05D005945 2.2e-75 286.6 319 48.3
Prupe.8G200800 Prunus persica HOM05D005051 ORTHO05D005945 3.7e-75 285.8 246 59.8
ClCG09G008890 Citrullus lanatus HOM05D005051 ORTHO05D005945 6.3e-75 285.0 325 47.4
Sed0023522 Sechium edule HOM05D005051 ORTHO05D005945 2.4e-74 283.1 326 47.2
THA.LOC104802665 Tarenaya hassleriana HOM05D005051 ORTHO05D005945 3.1e-74 282.7 311 50.8
Nn2g14125 Nelumbo nucifera HOM05D005051 ORTHO05D005945 4.1e-74 282.3 318 48.1
MD16G1223000 Malus domestica HOM05D005051 ORTHO05D005945 5.3e-74 282.0 241 58.1
Sed0004391 Sechium edule HOM05D005051 ORTHO05D005945 9.1e-74 281.2 324 46.3
FAN15G1450 Fragaria x ananassa HOM05D005051 ORTHO05D005945 1.5e-73 280.4 246 58.5
THA.LOC104818965 Tarenaya hassleriana HOM05D005051 ORTHO05D005945 2.0e-73 280.0 311 50.8
CsaV3_7G026000 Cucumis sativus L. HOM05D005051 ORTHO05D005945 7.7e-73 278.1 325 46.5
EL10Ac7g17867 Beta vulgaris HOM05D005051 ORTHO05D005945 1.7e-72 276.9 315 49.2
AUR62001109 Chenopodium quinoa HOM05D005051 ORTHO05D005945 3.8e-72 275.8 314 48.7
Gohir.D11G145300 Gossypium hirsutum HOM05D005051 ORTHO05D005945 1.9e-71 273.5 316 47.2
Hund18405 Selenicereus undatus HOM05D005051 ORTHO05D005945 1.9e-71 273.5 327 47.1
AUR62008933 Chenopodium quinoa HOM05D005051 ORTHO05D005945 3.2e-71 272.7 314 49.0
Gorai.007G155800 Gossypium raimondii HOM05D005051 ORTHO05D005945 3.2e-71 272.7 316 47.5
Lj2A1128T45 Lonicera japonica HOM05D005051 ORTHO05D005945 3.2e-71 272.7 346 43.9
Aa31LG5G17700 Aethionema arabicum HOM05D005051 ORTHO05D005945 5.5e-71 271.9 311 48.2
SHI23570 Sapria himalayana HOM05D005051 ORTHO05D005945 1.2e-70 270.8 316 47.8
SalBow6G3716 Salvia bowleyana HOM05D005051 ORTHO05D005945 1.6e-70 270.4 319 47.0
AL3G18390 Arabidopsis lyrata HOM05D005051 ORTHO05D005945 6.1e-70 268.5 311 48.2
Sc17g0002210 Simmondsia chinensis HOM05D005051 ORTHO05D005945 6.1e-70 268.5 328 49.4
Thhalv10020265m.g Eutrema salsugineum HOM05D005051 ORTHO05D005945 8.0e-70 268.1 311 47.9
Ah.02g115620 Amaranthus hybridus HOM05D005051 ORTHO05D005945 1.0e-69 267.7 323 48.0
Carub.0003s0666 Capsella rubella HOM05D005051 ORTHO05D005945 1.8e-69 266.9 311 48.2
Peaxi162Scf00398g00089 Petunia axillaris HOM05D005051 ORTHO05D005945 1.8e-69 266.9 322 46.9
Solyc09g059960.3 Solanum lycopersicum HOM05D005051 ORTHO05D005945 1.8e-69 266.9 317 46.7
CDE05G0682 Ceratophyllum demersum HOM05D005051 ORTHO05D005945 6.7e-69 265.0 312 44.9
Sopen09g023140 Solanum pennellii HOM05D005051 ORTHO05D005945 6.7e-69 265.0 317 46.4
AT3G07140 Arabidopsis thaliana HOM05D005051 ORTHO05D005945 8.8e-69 264.6 311 47.9
PGSC0003DMG400023098 Solanum tuberosum HOM05D005051 ORTHO05D005945 2.0e-68 263.5 317 46.7
CARHR081740 Cardamine hirsuta HOM05D005051 ORTHO05D005945 2.6e-68 263.1 307 47.2
ECA236G0910 Erigeron canadensis HOM05D005051 ORTHO05D005945 5.7e-68 261.9 321 45.2
MSTRG.18843 Avicennia marina HOM05D005051 ORTHO05D005945 7.4e-68 261.5 322 46.6
CAN.G3.1 Capsicum annuum HOM05D005051 ORTHO05D005945 1.7e-67 260.4 317 46.1
DCAR_012658 Daucus carota HOM05D005051 ORTHO05D005945 1.7e-67 260.4 325 45.5
PSO384G3368 Papaver somniferum HOM05D005051 ORTHO05D005945 1.7e-67 260.4 327 43.7
Migut.D02493 Erythranthe guttata HOM05D005051 ORTHO05D005945 4.8e-67 258.8 324 46.6
BraA05t22834Z Brassica rapa HOM05D005051 ORTHO05D005945 6.3e-67 258.5 311 47.6
BcaC05g29752 Brassica carinata HOM05D005051 ORTHO05D005945 1.8e-66 256.9 311 48.6
A05p41070 Brassica napus HOM05D005051 ORTHO05D005945 1.8e-66 256.9 311 47.3
HanXRQChr04g0108251 Helianthus annuus HOM05D005051 ORTHO05D005945 3.1e-66 256.1 317 45.1
Lsat_1_v5_gn_8_89520 Lactuca sativa HOM05D005051 ORTHO05D005945 3.1e-66 256.1 317 45.4
SGA_v2.0_scaffold171G38944 Striga asiatica HOM05D005051 ORTHO05D005945 3.5e-65 252.7 316 45.6
GSVIVG01011065001 Vitis vinifera HOM05D005051 ORTHO05D005945 4.5e-65 252.3 312 47.1
BolC5t34674H Brassica oleracea HOM05D005051 ORTHO05D005945 7.7e-65 251.5 311 47.6
PSO339G3208 Papaver somniferum HOM05D005051 ORTHO05D005945 1.3e-64 250.8 326 42.9
Nitab4.5_0000045g0340 Nicotiana tabacum HOM05D005051 ORTHO05D005945 2.2e-64 250.0 307 46.6
BcaC05g29842 Brassica carinata HOM05D005051 ORTHO05D005945 2.9e-64 249.6 311 47.3
C05p60240 Brassica napus HOM05D005051 ORTHO05D005945 3.8e-64 249.2 311 47.3
Oeu018495.2 Olea europaea HOM05D005051 ORTHO05D005945 1.4e-61 240.7 317 44.2
Oeu035785.1 Olea europaea HOM05D005051 ORTHO05D005945 1.5e-60 237.3 318 43.4
Zm00001eb269850 Zea mays HOM05D005051 ORTHO05D005945 1.1e-58 231.1 315 39.4
Aqoxy4G00040 Aquilegia oxysepala HOM05D005051 ORTHO05D005945 1.4e-58 230.7 316 42.7
Sp3g06080 Schrenkiella parvula HOM05D005051 ORTHO05D005945 5.3e-58 228.8 201 56.7
unitig_899.g15019 Utricularia gibba HOM05D005051 ORTHO05D005945 2.9e-56 223.0 240 48.3
ATR0564G162 Amborella trichopoda HOM05D005051 ORTHO05D005945 6.8e-53 211.8 259 43.6
Actinidia31469 Actinidia chinensis HOM05D005051 ORTHO05D005945 2.2e-51 206.8 217 50.2
SEGI_10192 Sequoiadendron giganteum HOM05D005051 ORTHO05D005945 5.9e-49 198.7 338 36.4
SEGI_29510 Sequoiadendron giganteum HOM05D005051 ORTHO05D005945 5.9e-49 198.7 338 36.4
Medtr6g061260 Medicago truncatula HOM05D005051 ORTHO05D005945 6.6e-48 195.3 134 75.4
Mapoly0173s0012 Marchantia polymorpha HOM05D005051 ORTHO05D005945 2.3e-45 186.8 351 35.3
AagrBONN_evm.TU.Sc2ySwM_368.938 Anthoceros agrestis HOM05D005051 ORTHO05D005945 2.0e-44 183.7 250 42.0
SMO259G0038 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 2.2e-43 180.3 302 39.4
QL09p053462 Quercus lobata HOM05D005051 ORTHO05D005945 2.1e-38 163.7 153 56.2
Pp3c21_19350 Physcomitrium patens HOM05D005051 ORTHO05D005945 6.8e-37 158.7 343 31.5
Sp2g19120 Schrenkiella parvula HOM05D005051 ORTHO05D005945 1.7e-35 154.1 201 46.3
COL.COLO4_36899 Corchorus olitorius HOM05D005051 ORTHO05D005945 2.9e-35 153.3 170 48.8
CBR_g44939 Chara braunii HOM05D005051 ORTHO05D005945 1.0e-32 144.8 140 52.1
SMO259G0024 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 3.0e-24 116.7 170 42.9
SMO259G0021 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 5.1e-24 115.9 159 44.0
SMO259G0051 Selaginella moellendorffii HOM05D012679 ORTHO05D005945 2.8e-22 110.2 155 43.2
SMO259G0015 Selaginella moellendorffii HOM05D012679 ORTHO05D005945 4.7e-22 109.4 155 43.2
SMO313G0001 Selaginella moellendorffii HOM05D012679 ORTHO05D005945 6.2e-22 109.0 155 42.6
QL09p048654 Quercus lobata HOM05D005051 ORTHO05D005945 1.4e-21 107.8 110 51.8
PRCOL_00003451 Prasinoderma coloniale HOM05D002267 ORTHO05D005902 1.8e-21 107.5 165 40.0
SMO108G0003 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 1.8e-21 107.5 155 43.2
SMO259G0055 Selaginella moellendorffii HOM05D012679 ORTHO05D005945 1.8e-21 107.5 155 43.2
SMO108G0001 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 5.2e-21 105.9 155 42.6
SMO108G0002 Selaginella moellendorffii HOM05D012679 ORTHO05D005945 5.2e-21 105.9 155 42.6
SMO108G0004 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 5.2e-21 105.9 155 42.6
SMO108G0005 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 5.2e-21 105.9 155 42.6
Glyma.13G258850 Glycine max HOM05D005051 ORTHO05D005945 2.6e-20 103.6 143 42.7
Glyma.13G196100 Glycine max HOM05D005051 ORTHO05D005945 3.4e-20 103.2 144 41.7
Glyma.13G368132 Glycine max HOM05D005051 ORTHO05D005945 7.6e-20 102.1 144 41.7
Sed0011580 Sechium edule HOM05D005051 ORTHO05D005945 1.1e-18 98.2 113 45.1
SMO174G0204 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 6.2e-14 82.4 169 34.3
TWI18G1080 Tripterygium wilfordii HOM05D005051 ORTHO05D005945 1.8e-13 80.9 104 45.2
Cfa025345 Carpinus fangiana HOM05D005051 ORTHO05D005945 6.8e-13 79.0 145 31.7
MCO05G006 Micromonas commoda HOM05D005051 ORTHO05D005945 1.9e-10 70.9 79 48.1
Medtr6g061110 Medicago truncatula HOM05D005051 ORTHO05D000004 5.4e-10 69.3 47 68.1
Cre10.g441100 Chlamydomonas reinhardtii HOM05D005051 ORTHO05D005945 6.0e-09 65.9 72 50.0


User provided reference genes

Program Settings