Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_23236_v3 Cicer arietinum L. HOM05D005051 ORTHO05D005945 0.0e+00 1308.9 663 100.0
TPR.G17135 Trifolium pratense HOM05D005051 ORTHO05D005945 0.0e+00 1099.3 659 84.7
Medtr8g013045 Medicago truncatula HOM05D005051 ORTHO05D005945 0.0e+00 1098.6 667 84.4
Psat4g199920 Pisum sativum HOM05D005051 ORTHO05D005945 0.0e+00 1088.2 664 83.1
Lj3g0013392 Lotus japonicus HOM05D005051 ORTHO05D005945 0.0e+00 1087.0 637 84.9
Phvul.010G020500 Phaseolus vulgaris HOM05D005051 ORTHO05D005945 4.1e-303 1044.3 665 78.6
Glyma.16G101100 Glycine max HOM05D005051 ORTHO05D005945 1.5e-297 1025.8 671 78.2
Glyma.03G064400 Glycine max HOM05D005051 ORTHO05D005945 1.3e-296 1022.7 669 77.9
arahy.Tifrunner.gnm1.ann1.8DP3DE Arachis hypogaea HOM05D005051 ORTHO05D005945 3.1e-295 1018.1 667 77.1
arahy.Tifrunner.gnm1.ann1.SK15G6 Arachis hypogaea HOM05D005051 ORTHO05D005945 9.1e-295 1016.5 666 76.9
VMungo1309G1922 Vigna mungo HOM05D005051 ORTHO05D005945 1.9e-292 1008.8 671 76.0
Lalb_Chr13g0291091 Lupinus albus HOM05D005051 ORTHO05D005945 7.2e-292 1006.9 665 76.5
Haze_24821 Corylus avellana HOM05D005051 ORTHO05D005945 1.3e-264 916.4 664 69.9
Cfa002585 Carpinus fangiana HOM05D005051 ORTHO05D005945 1.3e-261 906.4 665 69.5
QL09p053053 Quercus lobata HOM05D005051 ORTHO05D005945 1.1e-260 903.3 672 67.4
Medtr8g013050 Medicago truncatula HOM05D005051 ORTHO05D005945 5.6e-260 901.0 558 81.2
QL09p052190 Quercus lobata HOM05D005051 ORTHO05D005945 4.7e-259 897.9 672 67.3
CiPaw.03G147700 Carya illinoinensis HOM05D005051 ORTHO05D005945 2.7e-254 882.1 676 67.3
Atru.chr6.1506 Acer truncatum HOM05D005051 ORTHO05D005945 1.0e-253 880.2 669 65.9
Duzib138G1384 Durio zibethinus HOM05D005051 ORTHO05D005945 6.6e-253 877.5 641 67.4
Dinv19188 Davidia involucrata HOM05D005051 ORTHO05D005945 6.8e-250 867.5 658 67.3
Duzib211G0096 Durio zibethinus HOM05D005051 ORTHO05D005945 3.7e-248 861.7 640 66.2
Thecc.01G222800 Theobroma cacao HOM05D005051 ORTHO05D005945 1.4e-247 859.8 643 66.6
TAR365G1079 Trochodendron aralioides HOM05D005051 ORTHO05D005945 2.4e-247 859.0 662 66.0
Gorai.001G188000 Gossypium raimondii HOM05D005051 ORTHO05D005945 5.4e-247 857.8 640 66.2
Gohir.D07G164100 Gossypium hirsutum HOM05D005051 ORTHO05D005945 1.6e-246 856.3 667 64.5
Cpa.g.sc8.135 Carica papaya HOM05D005051 ORTHO05D005945 2.0e-246 855.9 658 65.3
Ciclev10019161m.g Citrus clementina HOM05D005051 ORTHO05D005945 4.6e-246 854.7 666 64.3
COL.COLO4_15648 Corchorus olitorius HOM05D005051 ORTHO05D005945 1.3e-245 853.2 643 65.0
MD13G1217900 Malus domestica HOM05D005051 ORTHO05D005945 3.6e-243 845.1 659 66.3
TWI36G0473 Tripterygium wilfordii HOM05D005051 ORTHO05D005945 1.8e-242 842.8 655 64.4
Actinidia30063 Actinidia chinensis HOM05D005051 ORTHO05D005945 2.3e-242 842.4 658 65.5
Sabra14G0142400 Salix brachista HOM05D005051 ORTHO05D005945 4.0e-242 841.6 677 64.1
Gohir.A07G158000 Gossypium hirsutum HOM05D005051 ORTHO05D005945 8.9e-242 840.5 639 65.6
Potri.014G190600 Populus trichocarpa HOM05D005051 ORTHO05D005945 1.5e-241 839.7 667 65.4
Manes.13G046400 Manihot esculenta HOM05D005051 ORTHO05D005945 9.8e-241 837.0 672 64.3
CSS0047345 Camellia sinensis var. sinensis HOM05D005051 ORTHO05D005945 1.9e-239 832.8 678 63.3
FAN24G2416 Fragaria x ananassa HOM05D005051 ORTHO05D005945 2.1e-238 829.3 656 64.9
FAN27G0551 Fragaria x ananassa HOM05D005051 ORTHO05D005945 2.1e-238 829.3 656 64.9
FvH4_2g18730 Fragaria vesca HOM05D005051 ORTHO05D005945 2.7e-238 828.9 656 64.9
PGR083G2429 Punica granatum HOM05D005051 ORTHO05D005945 6.6e-237 824.3 675 63.1
Cc01_g16860 Coffea canephora HOM05D005051 ORTHO05D005945 8.6e-237 823.9 664 63.3
GSVIVG01011065001 Vitis vinifera HOM05D005051 ORTHO05D005945 1.5e-236 823.2 662 64.5
ClCG09G008890 Citrullus lanatus HOM05D005051 ORTHO05D005945 2.3e-234 815.8 669 61.6
Eucgr.E03305 Eucalyptus grandis HOM05D005051 ORTHO05D005945 3.1e-234 815.5 639 64.6
Lj2A1128T45 Lonicera japonica HOM05D005051 ORTHO05D005945 4.4e-233 811.6 684 60.5
RcHm_v2.0_Chr6g0284351 Rosa chinensis HOM05D005051 ORTHO05D005945 1.3e-232 810.1 658 63.5
MELO3C021052.2 Cucumis melo HOM05D005051 ORTHO05D005945 2.9e-232 808.9 659 61.8
PSO384G3368 Papaver somniferum HOM05D005051 ORTHO05D005945 2.9e-232 808.9 668 61.7
Sed0004391 Sechium edule HOM05D005051 ORTHO05D005945 2.9e-232 808.9 665 61.5
THA.LOC104818965 Tarenaya hassleriana HOM05D005051 ORTHO05D005945 2.4e-231 805.8 635 64.6
Gohir.D11G145300 Gossypium hirsutum HOM05D005051 ORTHO05D005945 1.6e-230 803.1 650 62.2
Gohir.A11G139100 Gossypium hirsutum HOM05D005051 ORTHO05D005945 3.5e-230 802.0 602 64.3
THA.LOC104802665 Tarenaya hassleriana HOM05D005051 ORTHO05D005945 4.6e-230 801.6 663 63.0
CsaV3_7G026000 Cucumis sativus L. HOM05D005051 ORTHO05D005945 7.8e-230 800.8 659 60.8
AUR62008933 Chenopodium quinoa HOM05D005051 ORTHO05D005945 3.9e-229 798.5 660 63.0
AUR62001109 Chenopodium quinoa HOM05D005051 ORTHO05D005945 1.9e-228 796.2 643 63.5
Migut.D02493 Erythranthe guttata HOM05D005051 ORTHO05D005945 1.9e-228 796.2 661 62.9
Sed0023522 Sechium edule HOM05D005051 ORTHO05D005945 7.3e-228 794.3 665 61.7
Nn2g14125 Nelumbo nucifera HOM05D005051 ORTHO05D005945 9.6e-228 793.9 663 62.4
SalBow6G3716 Salvia bowleyana HOM05D005051 ORTHO05D005945 2.8e-227 792.3 657 62.6
Peaxi162Scf00398g00089 Petunia axillaris HOM05D005051 ORTHO05D005945 6.2e-227 791.2 661 61.9
MSTRG.18843 Avicennia marina HOM05D005051 ORTHO05D005945 5.2e-226 788.1 663 61.7
Solyc09g059960.3 Solanum lycopersicum HOM05D005051 ORTHO05D005945 5.2e-226 788.1 661 61.7
Sopen09g023140 Solanum pennellii HOM05D005051 ORTHO05D005945 1.2e-225 786.9 661 61.7
EL10Ac7g17867 Beta vulgaris HOM05D005051 ORTHO05D005945 5.8e-225 784.6 663 61.7
HanXRQChr04g0108251 Helianthus annuus HOM05D005051 ORTHO05D005945 9.9e-225 783.9 655 61.8
AT3G07140 Arabidopsis thaliana HOM05D005051 ORTHO05D005945 6.4e-224 781.2 663 61.1
vmacro02772 Vaccinium macrocarpon HOM05D005051 ORTHO05D005945 1.9e-223 779.6 586 67.4
CARHR081740 Cardamine hirsuta HOM05D005051 ORTHO05D005945 3.2e-223 778.9 654 61.0
PGSC0003DMG400023098 Solanum tuberosum HOM05D005051 ORTHO05D005945 5.4e-223 778.1 660 61.4
CAN.G3.1 Capsicum annuum HOM05D005051 ORTHO05D005945 9.3e-223 777.3 660 60.2
Aa31LG5G17700 Aethionema arabicum HOM05D005051 ORTHO05D005945 2.1e-222 776.2 647 61.4
ECA236G0910 Erigeron canadensis HOM05D005051 ORTHO05D005945 2.1e-222 776.2 645 61.1
Carub.0003s0666 Capsella rubella HOM05D005051 ORTHO05D005945 7.8e-222 774.2 633 62.6
Thhalv10020265m.g Eutrema salsugineum HOM05D005051 ORTHO05D005945 2.3e-221 772.7 658 61.1
Ah.02g115620 Amaranthus hybridus HOM05D005051 ORTHO05D005945 1.1e-220 770.4 656 61.4
AL3G18390 Arabidopsis lyrata HOM05D005051 ORTHO05D005945 2.5e-220 769.2 661 60.4
BraA05t22834Z Brassica rapa HOM05D005051 ORTHO05D005945 1.3e-219 766.9 637 61.4
Nitab4.5_0000045g0340 Nicotiana tabacum HOM05D005051 ORTHO05D005945 2.4e-218 762.7 647 61.2
A05p41070 Brassica napus HOM05D005051 ORTHO05D005945 2.6e-217 759.2 640 61.1
Lsat_1_v5_gn_8_89520 Lactuca sativa HOM05D005051 ORTHO05D005945 2.6e-217 759.2 639 60.6
BolC5t34674H Brassica oleracea HOM05D005051 ORTHO05D005945 5.8e-217 758.1 637 60.6
Prupe.8G200800 Prunus persica HOM05D005051 ORTHO05D005945 2.2e-216 756.1 581 65.9
DCAR_012658 Daucus carota HOM05D005051 ORTHO05D005945 2.9e-216 755.7 627 63.0
SGA_v2.0_scaffold171G38944 Striga asiatica HOM05D005051 ORTHO05D005945 4.9e-216 755.0 660 59.8
PSO339G3208 Papaver somniferum HOM05D005051 ORTHO05D005945 6.4e-216 754.6 668 57.9
C05p60240 Brassica napus HOM05D005051 ORTHO05D005945 1.4e-215 753.4 637 60.3
BcaC05g29752 Brassica carinata HOM05D005051 ORTHO05D005945 1.9e-215 753.1 634 60.6
BcaC05g29842 Brassica carinata HOM05D005051 ORTHO05D005945 4.2e-215 751.9 637 60.4
Oeu018495.2 Olea europaea HOM05D005051 ORTHO05D005945 7.1e-215 751.1 658 59.3
Sc17g0002210 Simmondsia chinensis HOM05D005051 ORTHO05D005945 1.6e-214 750.0 618 63.6
MD16G1223000 Malus domestica HOM05D005051 ORTHO05D005945 8.7e-213 744.2 583 65.4
FAN15G1450 Fragaria x ananassa HOM05D005051 ORTHO05D005945 7.4e-212 741.1 581 64.4
CDE05G0682 Ceratophyllum demersum HOM05D005051 ORTHO05D005945 1.2e-209 733.8 653 57.3
Aqoxy4G00040 Aquilegia oxysepala HOM05D005051 ORTHO05D005945 3.4e-209 732.3 662 56.9
Gorai.007G155800 Gossypium raimondii HOM05D005051 ORTHO05D005945 1.4e-202 710.3 640 57.7
Oeu035785.1 Olea europaea HOM05D005051 ORTHO05D005945 1.8e-202 709.9 694 54.9
SHI23570 Sapria himalayana HOM05D005051 ORTHO05D005945 5.1e-197 691.8 609 58.5
Zm00001eb269850 Zea mays HOM05D005051 ORTHO05D005945 1.4e-191 673.7 639 52.9
ATR0564G162 Amborella trichopoda HOM05D005051 ORTHO05D005945 8.8e-181 637.9 544 58.5
Hund18405 Selenicereus undatus HOM05D005051 ORTHO05D005945 7.5e-164 581.6 674 49.1
SEGI_10192 Sequoiadendron giganteum HOM05D005051 ORTHO05D005945 3.7e-163 579.3 562 53.6
Mapoly0173s0012 Marchantia polymorpha HOM05D005051 ORTHO05D005945 3.4e-156 556.2 692 46.4
Sp3g06080 Schrenkiella parvula HOM05D005051 ORTHO05D005945 1.0e-152 544.7 494 57.1
Sp2g19120 Schrenkiella parvula HOM05D005051 ORTHO05D005945 5.5e-151 538.9 576 52.1
SMO259G0038 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 1.0e-149 534.6 591 49.6
unitig_899.g15019 Utricularia gibba HOM05D005051 ORTHO05D005945 7.3e-135 485.3 429 56.2
Ca_23237_v3 Cicer arietinum L. HOM05D005051 ORTHO05D005945 2.1e-126 457.2 322 74.5
Actinidia31469 Actinidia chinensis HOM05D005051 ORTHO05D005945 2.9e-123 446.8 657 41.9
SEGI_29510 Sequoiadendron giganteum HOM05D005051 ORTHO05D005945 1.9e-119 434.1 526 45.4
Pp3c21_19350 Physcomitrium patens HOM05D005051 ORTHO05D005945 1.7e-115 421.0 608 40.1
TWI18G1080 Tripterygium wilfordii HOM05D005051 ORTHO05D005945 1.1e-114 418.3 391 57.5
CBR_g44939 Chara braunii HOM05D005051 ORTHO05D005945 7.1e-114 415.6 844 34.0
QL09p053462 Quercus lobata HOM05D005051 ORTHO05D005945 4.3e-111 406.4 393 54.5
AagrBONN_evm.TU.Sc2ySwM_368.938 Anthoceros agrestis HOM05D005051 ORTHO05D005945 4.3e-103 379.8 565 40.5
COL.COLO4_36899 Corchorus olitorius HOM05D005051 ORTHO05D005945 1.3e-91 341.7 214 74.3
Glyma.13G196100 Glycine max HOM05D005051 ORTHO05D005945 4.0e-85 320.1 297 57.6
Glyma.13G182400 Glycine max HOM05D005051 ORTHO05D005945 1.3e-83 315.1 204 78.4
Os11g0479232 Oryza sativa ssp. japonica HOM05D005051 ORTHO05D005945 4.5e-76 290.0 283 53.7
MCO05G006 Micromonas commoda HOM05D005051 ORTHO05D005945 3.1e-69 267.3 620 32.7
QL09p048654 Quercus lobata HOM05D005051 ORTHO05D005945 4.7e-65 253.4 226 56.2
Sed0011580 Sechium edule HOM05D005051 ORTHO05D005945 1.3e-62 245.4 401 41.6
TPR.G17133 Trifolium pratense HOM05D005051 ORTHO05D005945 2.3e-56 224.6 144 76.4
Cfa025345 Carpinus fangiana HOM05D005051 ORTHO05D005945 2.0e-55 221.5 647 30.8
PRCOL_00003451 Prasinoderma coloniale HOM05D002267 ORTHO05D005902 4.5e-52 210.3 658 29.3
HPP92_008216 Vanilla planifolia HOM05D005051 ORTHO05D005945 7.2e-50 203.0 220 51.4
Cre10.g441100 Chlamydomonas reinhardtii HOM05D005051 ORTHO05D005945 4.7e-49 200.3 712 28.5
Medtr6g061260 Medicago truncatula HOM05D005051 ORTHO05D005945 9.7e-47 192.6 140 73.6
Glyma.13G059866 Glycine max HOM05D005051 ORTHO05D005945 1.4e-45 188.7 120 78.3
Nitab4.5_0000345g0090 Nicotiana tabacum HOM05D005051 ORTHO05D000055 2.0e-44 184.9 145 67.6
SMO259G0021 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 1.2e-41 175.6 245 43.3
SMO259G0024 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 1.6e-41 175.3 248 43.5
Glyma.13G258850 Glycine max HOM05D005051 ORTHO05D005945 2.2e-38 164.9 184 51.6
Glyma.13G368132 Glycine max HOM05D005051 ORTHO05D005945 3.5e-36 157.5 128 63.3
SMO259G0028 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 6.1e-33 146.7 190 40.5
SMO174G0204 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 3.0e-32 144.4 250 38.8
QL09p053457 Quercus lobata HOM05D005051 ORTHO05D005945 5.2e-32 143.7 172 48.8
Zm00001eb184180 Zea mays HOM05D005051 ORTHO05D005945 7.5e-31 139.8 105 65.7
SMO108G0003 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 1.3e-27 129.0 254 37.0
SMO108G0005 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 1.3e-27 129.0 254 37.0
unitig_899.g15018 Utricularia gibba HOM05D003904 ORTHO05D004378 1.3e-27 129.0 108 67.6
SMO108G0001 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 3.8e-27 127.5 254 36.6
SMO108G0004 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 3.8e-27 127.5 254 36.6
SMO108G0002 Selaginella moellendorffii HOM05D012679 ORTHO05D005945 1.5e-26 125.6 230 38.3
Glyma.13G258901 Glycine max HOM05D005051 ORTHO05D005945 1.2e-20 105.9 63 85.7
SMO259G0051 Selaginella moellendorffii HOM05D012679 ORTHO05D005945 2.0e-20 105.1 162 40.7
SMO259G0015 Selaginella moellendorffii HOM05D012679 ORTHO05D005945 3.5e-20 104.4 162 40.7
SMO313G0001 Selaginella moellendorffii HOM05D012679 ORTHO05D005945 4.6e-20 104.0 162 40.1
Glyma.13G368066 Glycine max HOM05D005051 ORTHO05D005945 1.0e-19 102.8 63 84.1
SMO259G0055 Selaginella moellendorffii HOM05D012679 ORTHO05D005945 1.3e-19 102.4 135 45.2
Medtr6g061110 Medicago truncatula HOM05D005051 ORTHO05D000004 7.8e-12 76.6 40 87.5
Hund18406 Selenicereus undatus HOM05D005051 ORTHO05D005945 1.9e-10 72.0 49 67.3


User provided reference genes

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