Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_23187_v3 Cicer arietinum L. HOM05D007255 ORTHO05D009052 2.8e-140 501.9 244 100.0
Ca_30803_v3 Cicer arietinum L. HOM05D007255 ORTHO05D009052 2.8e-140 501.9 244 100.0
Medtr8g011480 Medicago truncatula HOM05D007255 ORTHO05D009052 1.6e-116 422.9 242 88.4
TPR.G15196 Trifolium pratense HOM05D007255 ORTHO05D009052 1.5e-114 416.4 249 85.9
Glyma.03G089600 Glycine max HOM05D007255 ORTHO05D009052 3.5e-103 378.6 238 81.1
Lj3g0001968 Lotus japonicus HOM05D007255 ORTHO05D009052 3.9e-102 375.2 257 75.9
arahy.Tifrunner.gnm1.ann1.TV22BE Arachis hypogaea HOM05D007255 ORTHO05D009052 2.1e-100 369.4 254 74.0
Phvul.010G031200 Phaseolus vulgaris HOM05D007255 ORTHO05D009052 6.2e-100 367.9 238 78.2
Lalb_Chr12g0210041 Lupinus albus HOM05D007255 ORTHO05D009052 2.9e-97 359.0 244 75.0
Thecc.01G211700 Theobroma cacao HOM05D007255 ORTHO05D009052 8.7e-94 347.4 236 72.0
arahy.Tifrunner.gnm1.ann1.UDT0KZ Arachis hypogaea HOM05D007255 ORTHO05D009052 1.1e-91 340.5 320 59.1
Potri.002G250500 Populus trichocarpa HOM05D007255 ORTHO05D009052 7.6e-90 334.3 232 71.6
COL.COLO4_28926 Corchorus olitorius HOM05D007255 ORTHO05D009052 8.4e-89 330.9 240 68.8
CiPaw.13G054800 Carya illinoinensis HOM05D007255 ORTHO05D009052 2.1e-87 326.2 238 69.3
Duzib211G0668 Durio zibethinus HOM05D007255 ORTHO05D009052 4.6e-87 325.1 236 68.6
Cpa.g.sc8.78 Carica papaya HOM05D007255 ORTHO05D009052 7.9e-87 324.3 232 69.8
Dinv10428 Davidia involucrata HOM05D007255 ORTHO05D009052 7.9e-87 324.3 239 69.5
FvH4_2g17870 Fragaria vesca HOM05D007255 ORTHO05D009052 3.9e-86 322.0 236 69.5
Sabra02G0190600 Salix brachista HOM05D007255 ORTHO05D009052 5.1e-86 321.6 232 69.4
FAN15G3515 Fragaria x ananassa HOM05D007255 ORTHO05D009052 8.7e-86 320.9 236 68.6
FAN27G1291 Fragaria x ananassa HOM05D007255 ORTHO05D009052 8.7e-86 320.9 236 68.6
QL09p046138 Quercus lobata HOM05D007255 ORTHO05D009052 8.7e-86 320.9 239 66.1
RcHm_v2.0_Chr6g0282891 Rosa chinensis HOM05D007255 ORTHO05D009052 8.7e-86 320.9 236 69.1
FAN24G0557 Fragaria x ananassa HOM05D007255 ORTHO05D009052 1.9e-85 319.7 236 69.1
Aa31LG5G18020 Aethionema arabicum HOM05D007255 ORTHO05D009052 9.7e-85 317.4 236 70.3
Eucgr.K02090 Eucalyptus grandis HOM05D007255 ORTHO05D009052 9.7e-85 317.4 236 66.9
Manes.13G054000 Manihot esculenta HOM05D007255 ORTHO05D009052 2.2e-84 316.2 233 67.0
Prupe.8G191100 Prunus persica HOM05D007255 ORTHO05D009052 3.7e-84 315.5 240 69.2
PGR044G0433 Punica granatum HOM05D007255 ORTHO05D009052 3.7e-84 315.5 213 73.2
THA.LOC104818995 Tarenaya hassleriana HOM05D007255 ORTHO05D009052 3.7e-84 315.5 235 68.1
Gorai.007G159200 Gossypium raimondii HOM05D007255 ORTHO05D009052 4.8e-84 315.1 238 66.4
Gohir.D11G148500 Gossypium hirsutum HOM05D007255 ORTHO05D009052 1.8e-83 313.2 238 66.4
CANSAT01G0773 Cannabis sativa HOM05D007255 ORTHO05D009052 4.1e-83 312.0 237 67.9
Atru.chr6.3551 Acer truncatum HOM05D007255 ORTHO05D009052 5.3e-83 311.6 238 67.6
AL3G18750 Arabidopsis lyrata HOM05D007255 ORTHO05D009052 5.3e-83 311.6 211 71.1
Gohir.A11G142200 Gossypium hirsutum HOM05D007255 ORTHO05D009052 1.2e-82 310.5 238 65.5
AT3G07440 Arabidopsis thaliana HOM05D007255 ORTHO05D009052 1.5e-82 310.1 214 70.6
Hma1.2p1_0161F.1_g071360 Hydrangea macrophylla HOM05D007255 ORTHO05D009052 1.5e-82 310.1 239 68.2
C07p39220 Brassica napus HOM05D007255 ORTHO05D009052 2.0e-82 309.7 237 69.6
BolC7t44442H Brassica oleracea HOM05D007255 ORTHO05D009052 2.0e-82 309.7 237 69.6
Actinidia34549 Actinidia chinensis HOM05D007255 ORTHO05D009052 5.9e-82 308.1 241 67.6
Thhalv10004862m.g Eutrema salsugineum HOM05D007255 ORTHO05D009052 5.9e-82 308.1 235 70.2
MD10G1152600 Malus domestica HOM05D007255 ORTHO05D009052 5.9e-82 308.1 213 75.1
Carub.0003s0699 Capsella rubella HOM05D007255 ORTHO05D009052 7.6e-82 307.8 211 69.7
TWI18G1029 Tripterygium wilfordii HOM05D007255 ORTHO05D009052 1.7e-81 306.6 222 68.9
CARHR082090 Cardamine hirsuta HOM05D007255 ORTHO05D009052 3.8e-81 305.4 233 67.0
A06p39120 Brassica napus HOM05D007255 ORTHO05D009052 8.5e-81 304.3 237 68.8
Sp2g18890 Schrenkiella parvula HOM05D007255 ORTHO05D009052 1.1e-80 303.9 236 69.1
BraA06t26826Z Brassica rapa HOM05D007255 ORTHO05D009052 7.2e-80 301.2 237 68.4
Rhsim01G0248900 Rhododendron simsii HOM05D007255 ORTHO05D009052 9.4e-80 300.8 245 65.3
Cc01_g16200 Coffea canephora HOM05D007255 ORTHO05D009052 1.2e-79 300.4 218 69.7
Nitab4.5_0000038g0080 Nicotiana tabacum HOM05D007255 ORTHO05D009052 2.1e-79 299.7 241 66.0
Aqoxy5G00040 Aquilegia oxysepala HOM05D007255 ORTHO05D009052 4.6e-79 298.5 238 65.1
vmacro14695 Vaccinium macrocarpon HOM05D007255 ORTHO05D009052 6.1e-79 298.1 248 64.1
Ciclev10016497m.g Citrus clementina HOM05D007255 ORTHO05D009052 1.0e-78 297.4 237 66.2
Nitab4.5_0005972g0030 Nicotiana tabacum HOM05D007255 ORTHO05D009052 1.0e-78 297.4 241 65.1
BcaC06g30785 Brassica carinata HOM05D007255 ORTHO05D009052 1.8e-78 296.6 223 70.4
MSTRG.18490 Avicennia marina HOM05D007255 ORTHO05D009052 2.3e-78 296.2 220 67.7
Oeu064665.2 Olea europaea HOM05D007255 ORTHO05D009052 3.0e-78 295.8 259 61.8
TAR365G1235 Trochodendron aralioides HOM05D007255 ORTHO05D009052 3.0e-78 295.8 242 64.5
SGA_v2.0_scaffold29G12102 Striga asiatica HOM05D007255 ORTHO05D009052 1.9e-77 293.1 220 66.8
Solyc09g058990.3 Solanum lycopersicum HOM05D007255 ORTHO05D009052 7.4e-77 291.2 239 63.2
MELO3C012737.2 Cucumis melo HOM05D007255 ORTHO05D009052 9.7e-77 290.8 230 65.2
CsaV3_7G026920 Cucumis sativus L. HOM05D007255 ORTHO05D009052 1.7e-76 290.0 228 64.5
SalBow6G0858 Salvia bowleyana HOM05D007255 ORTHO05D009052 3.7e-76 288.9 245 61.6
Migut.D00726 Erythranthe guttata HOM05D007255 ORTHO05D009052 1.4e-75 287.0 244 61.5
Hund02793 Selenicereus undatus HOM05D007255 ORTHO05D009052 1.2e-74 283.9 238 62.6
Sc05g0001760 Simmondsia chinensis HOM05D007255 ORTHO05D009052 2.0e-74 283.1 240 62.1
Sopen09g020080 Solanum pennellii HOM05D007255 ORTHO05D009052 2.6e-74 282.7 242 62.4
Ah.11g051090 Amaranthus hybridus HOM05D007255 ORTHO05D009052 1.3e-73 280.4 238 61.8
ECA248G0740 Erigeron canadensis HOM05D007255 ORTHO05D009052 3.8e-73 278.9 237 61.2
Nn1g08274 Nelumbo nucifera HOM05D007255 ORTHO05D009052 3.8e-73 278.9 310 51.0
Sed0001908 Sechium edule HOM05D007255 ORTHO05D009052 5.0e-73 278.5 237 61.2
Lsat_1_v5_gn_5_178401 Lactuca sativa HOM05D007255 ORTHO05D009052 1.1e-72 277.3 197 66.0
ClCG09G008130 Citrullus lanatus HOM05D007352 ORTHO05D009052 3.2e-72 275.8 265 55.8
AT5G48530 Arabidopsis thaliana HOM05D007255 ORTHO05D009052 9.4e-72 274.2 198 72.7
PSO170G5614 Papaver somniferum HOM05D007255 ORTHO05D009052 1.4e-70 270.4 215 62.8
PSO357G0536 Papaver somniferum HOM05D007255 ORTHO05D009052 1.7e-68 263.5 215 61.4
EL10Ac5g10635 Beta vulgaris HOM05D007255 ORTHO05D009052 2.2e-68 263.1 221 60.2
Nn1g03664 Nelumbo nucifera HOM05D007255 ORTHO05D009052 1.4e-67 260.4 236 58.1
AUR62028710 Chenopodium quinoa HOM05D007255 ORTHO05D009052 1.1e-64 250.8 264 53.0
Os02g0478500 Oryza sativa ssp. japonica HOM05D007255 ORTHO05D009052 5.5e-64 248.4 174 67.8
Zm00001eb241080 Zea mays HOM05D007255 ORTHO05D009052 1.6e-63 246.9 175 69.1
ATR0491G001 Amborella trichopoda HOM05D007255 ORTHO05D009052 4.7e-63 245.4 171 70.2
unitig_62.g23864 Utricularia gibba HOM05D007255 ORTHO05D009052 4.7e-63 245.4 244 54.1
Aqoxy2G00044 Aquilegia oxysepala HOM05D007255 ORTHO05D009052 2.0e-61 240.0 179 67.0
HanXRQChr01g0025051 Helianthus annuus HOM05D007255 ORTHO05D009052 2.6e-61 239.6 170 71.2
CSS0043687 Camellia sinensis var. sinensis HOM05D007255 ORTHO05D009052 1.3e-60 237.3 160 75.6
Haze_03304 Corylus avellana HOM05D007255 ORTHO05D009052 3.7e-60 235.7 173 69.9
unitig_64.g29772 Utricularia gibba HOM05D007255 ORTHO05D009052 1.8e-59 233.4 222 55.4
GSVIVG01006076001 Vitis vinifera HOM05D007255 ORTHO05D009052 2.4e-59 233.0 162 73.5
DCAR_018628 Daucus carota HOM05D007255 ORTHO05D009052 6.5e-57 224.9 159 69.8
Lj1A100G17 Lonicera japonica HOM05D007255 ORTHO05D009052 1.8e-54 216.9 179 64.8
Peaxi162Scf00335g01514 Petunia axillaris HOM05D007255 ORTHO05D009052 2.6e-53 213.0 242 53.3
Glyma.16G083400 Glycine max HOM05D007255 ORTHO05D009052 2.8e-52 209.5 113 87.6
Actinidia23788 Actinidia chinensis HOM05D007255 ORTHO05D009052 4.1e-51 205.7 191 58.1
HPP92_024260 Vanilla planifolia HOM05D007255 ORTHO05D009052 6.6e-41 171.8 129 63.6
VMungo0331G1225 Vigna mungo HOM05D007255 ORTHO05D009052 3.4e-37 159.5 118 69.5
AUR62008128 Chenopodium quinoa HOM05D007255 ORTHO05D009052 7.5e-37 158.3 133 62.4
VMungo0331G0526 Vigna mungo HOM05D007255 ORTHO05D009052 1.5e-29 134.0 105 69.5
HPP92_024228 Vanilla planifolia HOM05D007255 ORTHO05D009052 7.8e-26 121.7 101 63.4
Psat0s4060g0280 Pisum sativum HOM05D007255 ORTHO05D009052 1.6e-23 114.0 73 83.6
CDE04G1852 Ceratophyllum demersum HOM05D007255 ORTHO05D009052 1.4e-22 110.9 77 68.8
Prupe.8G191300 Prunus persica HOM05D007255 ORTHO05D009052 1.3e-20 104.4 95 61.1
SEGI_09952 Sequoiadendron giganteum HOM05D007255 ORTHO05D009052 1.1e-19 101.3 95 56.8
VMungo0251G0654 Vigna mungo HOM05D007255 ORTHO05D009052 1.1e-16 91.3 60 76.7
GSVIVG01006250001 Vitis vinifera HOM05D007255 ORTHO05D009052 4.0e-14 82.8 68 60.3
Potri.007G083100 Populus trichocarpa HOM05D007255 ORTHO05D009052 7.3e-08 62.0 35 80.0


User provided reference genes

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