Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_23135_v3 Cicer arietinum L. HOM05D005975 ORTHO05D007373 0.0e+00 1300.0 651 100.0
Psat1g024880 Pisum sativum HOM05D005975 ORTHO05D007373 0.0e+00 1151.7 651 89.2
Lj1g0009400 Lotus japonicus HOM05D005975 ORTHO05D007373 0.0e+00 1129.0 658 87.1
TPR.G10356 Trifolium pratense HOM05D005975 ORTHO05D007373 0.0e+00 1112.8 655 86.1
Glyma.04G152200 Glycine max HOM05D005975 ORTHO05D007373 0.0e+00 1112.4 654 86.1
Phvul.009G200500 Phaseolus vulgaris HOM05D005975 ORTHO05D007373 0.0e+00 1103.2 652 85.3
Glyma.06G210800 Glycine max HOM05D005975 ORTHO05D007373 0.0e+00 1102.4 654 85.3
Glyma.17G121100 Glycine max HOM05D005975 ORTHO05D007373 7.5e-302 1040.0 676 76.9
MD06G1211600 Malus domestica HOM05D005975 ORTHO05D007373 8.3e-301 1036.6 677 77.1
Lalb_Chr12g0197601 Lupinus albus HOM05D005975 ORTHO05D007373 5.0e-298 1027.3 657 78.5
MD14G1222100 Malus domestica HOM05D005975 ORTHO05D007373 2.5e-297 1025.0 677 75.5
Thecc.03G028700 Theobroma cacao HOM05D005975 ORTHO05D007373 3.3e-297 1024.6 678 76.1
RcHm_v2.0_Chr7g0184651 Rosa chinensis HOM05D005975 ORTHO05D007373 7.3e-297 1023.5 680 76.2
Duzib205G1016 Durio zibethinus HOM05D005975 ORTHO05D007373 4.4e-294 1014.2 680 75.6
VMungo1309G0041 Vigna mungo HOM05D005975 ORTHO05D007373 3.7e-293 1011.1 581 87.3
FvH4_5g12680 Fragaria vesca HOM05D005975 ORTHO05D007373 1.9e-292 1008.8 677 75.9
FAN18G3396 Fragaria x ananassa HOM05D005975 ORTHO05D007373 9.2e-292 1006.5 677 75.8
Gorai.007G007400 Gossypium raimondii HOM05D005975 ORTHO05D007373 1.6e-291 1005.7 680 74.3
Gohir.A11G007000 Gossypium hirsutum HOM05D005975 ORTHO05D007373 2.1e-291 1005.4 680 74.3
Ciclev10019197m.g Citrus clementina HOM05D005975 ORTHO05D007373 4.6e-291 1004.2 665 74.7
CiPaw.15G127100 Carya illinoinensis HOM05D005975 ORTHO05D007373 6.0e-291 1003.8 694 73.9
Gohir.D11G006100 Gossypium hirsutum HOM05D005975 ORTHO05D007373 1.7e-290 1002.3 680 74.0
FAN08G0232 Fragaria x ananassa HOM05D005975 ORTHO05D007373 8.6e-290 1000.0 679 75.6
FAN04G2679 Fragaria x ananassa HOM05D005975 ORTHO05D007373 1.5e-289 999.2 691 74.1
FAN13G1844 Fragaria x ananassa HOM05D005975 ORTHO05D007373 1.5e-286 989.2 686 74.1
TAR374G1293 Trochodendron aralioides HOM05D005975 ORTHO05D007373 1.7e-285 985.7 678 72.7
TAR622G0473 Trochodendron aralioides HOM05D005975 ORTHO05D007373 5.4e-284 980.7 679 72.6
Hma1.2p1_0592F.1_g185285 Hydrangea macrophylla HOM05D005975 ORTHO05D007373 2.1e-283 978.8 669 74.9
Manes.05G139300 Manihot esculenta HOM05D005975 ORTHO05D007373 1.0e-282 976.5 676 73.1
Rhsim08G0136800 Rhododendron simsii HOM05D005975 ORTHO05D007373 1.0e-282 976.5 660 73.8
ClCG06G015000 Citrullus lanatus HOM05D005975 ORTHO05D007373 1.1e-281 973.0 668 72.5
PGR083G1175 Punica granatum HOM05D005975 ORTHO05D007373 2.5e-281 971.8 652 75.2
Aqoxy3G03906 Aquilegia oxysepala HOM05D005975 ORTHO05D007373 4.3e-281 971.1 671 71.2
MELO3C017289.2 Cucumis melo HOM05D005975 ORTHO05D007373 7.3e-281 970.3 668 72.5
CSS0000913 Camellia sinensis var. sinensis HOM05D005975 ORTHO05D007373 9.6e-281 969.9 690 72.3
CsaV3_1G003650 Cucumis sativus L. HOM05D005975 ORTHO05D007373 9.6e-281 969.9 667 72.9
Eucgr.B00701 Eucalyptus grandis HOM05D005975 ORTHO05D007373 2.8e-280 968.4 649 74.9
Potri.015G049900 Populus trichocarpa HOM05D005975 ORTHO05D007373 2.8e-280 968.4 678 73.3
GSVIVG01008239001 Vitis vinifera HOM05D005975 ORTHO05D007373 6.2e-280 967.2 654 74.5
Potri.012G060200 Populus trichocarpa HOM05D005975 ORTHO05D007373 1.1e-279 966.5 678 72.4
VMungo1215G0359 Vigna mungo HOM05D005975 ORTHO05D007373 3.1e-279 964.9 646 73.7
Sabra12G0043300 Salix brachista HOM05D005975 ORTHO05D007373 8.4e-277 956.8 677 72.2
PSO063G1047 Papaver somniferum HOM05D005975 ORTHO05D007373 3.2e-276 954.9 658 71.9
Sed0024013 Sechium edule HOM05D005975 ORTHO05D007373 1.6e-275 952.6 667 71.8
Atru.chr9.776 Acer truncatum HOM05D005975 ORTHO05D007373 4.6e-275 951.0 618 76.4
PSO782G2585 Papaver somniferum HOM05D005975 ORTHO05D007373 4.3e-273 944.5 657 71.4
Actinidia31028 Actinidia chinensis HOM05D005975 ORTHO05D007373 1.6e-272 942.6 642 73.8
arahy.Tifrunner.gnm1.ann1.1K5T8S Arachis hypogaea HOM05D005975 ORTHO05D007373 2.1e-272 942.2 605 77.4
Cc04_g07500 Coffea canephora HOM05D005975 ORTHO05D007373 4.8e-272 941.0 670 70.4
Peaxi162Scf00015g00726 Petunia axillaris HOM05D005975 ORTHO05D007373 1.4e-271 939.5 649 72.4
AUR62032193 Chenopodium quinoa HOM05D005975 ORTHO05D007373 4.0e-271 937.9 650 73.1
THA.LOC104808292 Tarenaya hassleriana HOM05D005975 ORTHO05D007373 6.9e-271 937.2 626 73.3
Thhalv10018286m.g Eutrema salsugineum HOM05D005975 ORTHO05D007373 9.0e-271 936.8 629 73.4
AT1G73930 Arabidopsis thaliana HOM05D005975 ORTHO05D007373 3.4e-270 934.9 629 73.1
CARHR067040 Cardamine hirsuta HOM05D005975 ORTHO05D007373 3.4e-270 934.9 629 73.0
AL2G33760 Arabidopsis lyrata HOM05D005975 ORTHO05D007373 4.5e-270 934.5 630 72.9
AUR62036958 Chenopodium quinoa HOM05D005975 ORTHO05D007373 5.8e-270 934.1 654 72.3
DCAR_015134 Daucus carota HOM05D005975 ORTHO05D007373 9.9e-270 933.3 635 73.4
Haze_18619 Corylus avellana HOM05D005975 ORTHO05D007373 3.8e-269 931.4 600 78.2
Nitab4.5_0001599g0180 Nicotiana tabacum HOM05D005975 ORTHO05D007373 4.9e-269 931.0 659 71.3
Oeu024324.1 Olea europaea HOM05D005975 ORTHO05D007373 1.2e-267 926.4 652 71.2
Hund10002 Selenicereus undatus HOM05D005975 ORTHO05D007373 2.7e-267 925.2 650 70.8
QL10p022556 Quercus lobata HOM05D005975 ORTHO05D007373 4.6e-267 924.5 604 77.5
Ah.11g047090 Amaranthus hybridus HOM05D005975 ORTHO05D007373 6.0e-267 924.1 630 72.7
Dinv38586 Davidia involucrata HOM05D005975 ORTHO05D007373 6.7e-266 920.6 602 77.2
Solyc03g119750.4 Solanum lycopersicum HOM05D005975 ORTHO05D007373 5.6e-265 917.5 653 70.6
PGSC0003DMG400005625 Solanum tuberosum HOM05D005975 ORTHO05D007373 1.3e-264 916.4 664 69.7
MBI19_g38388_MAGBIO Magnolia biondii HOM05D005975 ORTHO05D007373 2.1e-264 915.6 669 69.4
Prupe.5G217600 Prunus persica HOM05D005975 ORTHO05D007373 3.6e-264 914.8 544 83.8
ECA232G0421 Erigeron canadensis HOM05D005975 ORTHO05D007373 4.8e-264 914.4 632 72.3
Nitab4.5_0000410g0070 Nicotiana tabacum HOM05D005975 ORTHO05D007373 6.2e-264 914.1 659 70.6
Sopen03g038600 Solanum pennellii HOM05D005975 ORTHO05D007373 1.4e-263 912.9 653 70.4
HanXRQChr09g0269781 Helianthus annuus HOM05D005975 ORTHO05D007373 1.5e-262 909.4 635 72.0
Cpa.g.sc549.1 Carica papaya HOM05D005975 ORTHO05D007373 4.5e-262 907.9 602 76.1
Sc10g0009550 Simmondsia chinensis HOM05D005975 ORTHO05D007373 5.8e-262 907.5 660 69.1
SGA_v2.0_scaffold25G10981 Striga asiatica HOM05D005975 ORTHO05D007373 1.3e-261 906.4 647 70.3
Hund02524 Selenicereus undatus HOM05D005975 ORTHO05D007373 1.1e-260 903.3 651 69.9
vmacro17674 Vaccinium macrocarpon HOM05D005975 ORTHO05D007373 2.4e-260 902.1 589 75.9
BcaB05g24819 Brassica carinata HOM05D005975 ORTHO05D007373 1.6e-259 899.4 632 69.8
BolC2t09180H Brassica oleracea HOM05D005975 ORTHO05D007373 2.1e-259 899.0 633 70.3
BraA02t06937Z Brassica rapa HOM05D005975 ORTHO05D007373 1.8e-258 896.0 633 70.1
Sp5g29130 Schrenkiella parvula HOM05D005975 ORTHO05D007373 8.7e-258 893.6 627 70.5
A02p18950 Brassica napus HOM05D005975 ORTHO05D007373 4.3e-257 891.3 631 70.2
BcaC03g15468 Brassica carinata HOM05D005975 ORTHO05D007373 5.6e-257 891.0 633 69.8
Lsat_1_v5_gn_3_10441 Lactuca sativa HOM05D005975 ORTHO05D007373 8.1e-256 887.1 626 71.4
Aa31LG4G4220 Aethionema arabicum HOM05D005975 ORTHO05D007373 3.1e-255 885.2 629 70.6
C02p31490 Brassica napus HOM05D005975 ORTHO05D007373 5.3e-255 884.4 634 69.6
Migut.I00389 Erythranthe guttata HOM05D005975 ORTHO05D007373 3.2e-252 875.2 684 66.7
EL10Ac5g11254 Beta vulgaris HOM05D005975 ORTHO05D007373 9.3e-252 873.6 605 71.7
CAN.G438.116 Capsicum annuum HOM05D005975 ORTHO05D007373 2.4e-247 859.0 604 70.5
Lj9A429T54 Lonicera japonica HOM05D005975 ORTHO05D007373 4.5e-246 854.7 601 72.9
ATR0753G136 Amborella trichopoda HOM05D005975 ORTHO05D007373 3.9e-242 841.6 742 59.7
MSTRG.22940 Avicennia marina HOM05D005975 ORTHO05D007373 1.3e-240 836.6 606 69.5
Phvul.003G176900 Phaseolus vulgaris HOM05D005975 ORTHO05D007373 6.3e-240 834.3 517 79.5
Glyma.05G013100 Glycine max HOM05D005975 ORTHO05D007373 5.5e-236 821.2 649 66.6
Os03g0259700 Oryza sativa ssp. japonica HOM05D005975 ORTHO05D007373 5.2e-226 788.1 660 61.2
unitig_22.g6248 Utricularia gibba HOM05D005975 ORTHO05D007373 2.1e-219 766.1 630 62.7
COL.COLO4_22722 Corchorus olitorius HOM05D005975 ORTHO05D007373 2.0e-214 749.6 473 80.5
SalBow5G4970 Salvia bowleyana HOM05D005975 ORTHO05D007373 2.7e-214 749.2 667 59.4
Sabra15G0077800 Salix brachista HOM05D005975 ORTHO05D007373 3.5e-214 748.8 651 62.4
SEGI_09157 Sequoiadendron giganteum HOM05D005975 ORTHO05D007373 6.8e-210 734.6 774 51.6
Pp3c12_18170 Physcomitrium patens HOM05D005975 ORTHO05D007373 9.8e-209 730.7 759 50.2
Pp3c4_11450 Physcomitrium patens HOM05D005975 ORTHO05D007373 2.8e-208 729.2 760 49.7
AagrBONN_evm.TU.Sc2ySwM_228.4839 Anthoceros agrestis HOM05D005975 ORTHO05D007373 1.1e-204 717.2 824 48.3
Mapoly0016s0160 Marchantia polymorpha HOM05D005975 ORTHO05D007373 5.5e-204 714.9 843 46.1
Zm00001eb011310 Zea mays HOM05D005975 ORTHO05D007373 8.0e-203 711.1 566 62.7
Carub.0002s2070 Capsella rubella HOM05D005975 ORTHO05D007373 7.5e-193 677.9 455 73.6
SMO367G0788 Selaginella moellendorffii HOM05D005975 ORTHO05D007373 2.2e-184 649.8 632 52.7
Nn3g17719 Nelumbo nucifera HOM05D005975 ORTHO05D007373 1.5e-169 600.5 424 72.2
CDE05G1454 Ceratophyllum demersum HOM05D005975 ORTHO05D007373 3.9e-165 585.9 521 59.3
CBR_g30105 Chara braunii HOM05D005975 ORTHO05D007373 8.4e-160 568.2 548 53.6
TAR622G1340 Trochodendron aralioides HOM05D005975 ORTHO05D007373 1.7e-157 560.5 434 67.1
arahy.Tifrunner.gnm1.ann1.CEL6SJ Arachis hypogaea HOM05D005975 ORTHO05D007373 2.8e-123 446.8 263 83.7
CDE05G3359 Ceratophyllum demersum HOM05D005975 ORTHO05D007373 7.2e-119 432.2 378 61.4
PSO074G0001 Papaver somniferum HOM05D005975 ORTHO05D007373 2.2e-115 420.6 308 68.2
HPP92_016579 Vanilla planifolia HOM05D005975 ORTHO05D007373 1.7e-107 394.4 343 58.9
HPP92_016580 Vanilla planifolia HOM05D005975 ORTHO05D007373 1.5e-100 371.3 259 70.3
BcaB05g24817 Brassica carinata HOM05D005975 ORTHO05D007373 2.2e-91 340.9 215 75.3
Zm00001eb237870 Zea mays HOM05D005975 ORTHO05D007373 1.2e-86 325.1 537 39.7
SMO146G0145 Selaginella moellendorffii HOM05D005975 ORTHO05D007373 5.7e-84 316.2 342 50.6
Zm00001eb078910 Zea mays HOM05D005975 ORTHO05D007373 1.9e-63 248.1 155 73.5
CDE05G0573 Ceratophyllum demersum HOM05D005975 ORTHO05D007373 5.4e-42 176.8 135 64.4
Cre14.g633500 Chlamydomonas reinhardtii HOM05D005975 ORTHO05D007373 2.7e-41 174.5 454 30.2
Nn3g18207 Nelumbo nucifera HOM05D005975 ORTHO05D007373 8.4e-35 152.9 140 56.4
Dinv38585 Davidia involucrata HOM05D005975 ORTHO05D007373 3.5e-17 94.4 65 72.3
Cfa019814 Carpinus fangiana HOM05D005975 ORTHO05D007373 6.7e-16 90.1 79 58.2
Nn4g23789 Nelumbo nucifera HOM05D005975 ORTHO05D007373 5.3e-13 80.5 144 36.1
Lj9A429T53 Lonicera japonica HOM05D005975 ORTHO05D007373 1.5e-07 62.4 42 66.7


User provided reference genes

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