Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_23093_v3 Cicer arietinum L. HOM05D003665 ORTHO05D004387 9.9e-50 199.9 107 100.0
Ah.12g061180 Amaranthus hybridus HOM05D003665 ORTHO05D004387 7.3e-29 130.6 86 76.7
Eucgr.B02502 Eucalyptus grandis HOM05D003665 ORTHO05D004387 9.6e-29 130.2 66 93.9
Lj2C1027G11 Lonicera japonica HOM05D003665 ORTHO05D004387 1.3e-28 129.8 67 91.0
TPR.G11547 Trifolium pratense HOM05D003665 ORTHO05D004387 2.1e-28 129.0 68 92.6
ATR0033G036 Amborella trichopoda HOM05D003665 ORTHO05D004387 2.8e-28 128.6 65 95.4
Lalb_Chr24g0394651 Lupinus albus HOM05D003665 ORTHO05D004387 2.8e-28 128.6 65 95.4
EL10Ac2g02422 Beta vulgaris HOM05D003665 ORTHO05D004387 3.6e-28 128.3 65 93.8
Cpa.g.sc216.2 Carica papaya HOM05D003665 ORTHO05D004387 3.6e-28 128.3 65 93.8
Manes.11G145800 Manihot esculenta HOM05D003665 ORTHO05D004387 3.6e-28 128.3 65 93.8
Potri.009G014400 Populus trichocarpa HOM05D003665 ORTHO05D004387 3.6e-28 128.3 65 93.8
Sabra09G0007600 Salix brachista HOM05D003665 ORTHO05D004387 3.6e-28 128.3 65 93.8
Actinidia13995 Actinidia chinensis HOM05D003665 ORTHO05D004387 4.8e-28 127.9 66 90.9
Actinidia24103 Actinidia chinensis HOM05D003665 ORTHO05D004387 4.8e-28 127.9 65 92.3
MSTRG.18661 Avicennia marina HOM05D003665 ORTHO05D004387 4.8e-28 127.9 65 92.3
vmacro03198 Vaccinium macrocarpon HOM05D003665 ORTHO05D004387 4.8e-28 127.9 65 92.3
Medtr2g094470 Medicago truncatula HOM05D003665 ORTHO05D004387 6.2e-28 127.5 65 93.8
Sc06g0010260 Simmondsia chinensis HOM05D003665 ORTHO05D004387 6.2e-28 127.5 65 92.3
DCAR_006064 Daucus carota HOM05D003665 ORTHO05D004387 8.1e-28 127.1 65 92.3
ECA248G0778 Erigeron canadensis HOM05D003665 ORTHO05D004387 8.1e-28 127.1 65 92.3
Gohir.A05G103400 Gossypium hirsutum HOM05D003665 ORTHO05D004387 8.1e-28 127.1 68 89.7
Potri.004G211200 Populus trichocarpa HOM05D003665 ORTHO05D004387 8.1e-28 127.1 65 92.3
Haze_23819 Corylus avellana HOM05D003665 ORTHO05D004387 1.1e-27 126.7 67 91.0
Glyma.12G172200 Glycine max HOM05D003665 ORTHO05D004387 1.1e-27 126.7 65 93.8
Solyc03g115810.3 Solanum lycopersicum HOM05D003665 ORTHO05D004387 1.1e-27 126.7 65 93.8
Sopen03g034790 Solanum pennellii HOM05D003665 ORTHO05D004387 1.1e-27 126.7 65 93.8
PGSC0003DMG400019504 Solanum tuberosum HOM05D003665 ORTHO05D004387 1.1e-27 126.7 65 93.8
TAR623G1097 Trochodendron aralioides HOM05D003665 ORTHO05D004387 1.1e-27 126.7 66 92.4
Atru.chr3.3622 Acer truncatum HOM05D003665 ORTHO05D004387 1.4e-27 126.3 65 92.3
MD03G1118200 Malus domestica HOM05D003665 ORTHO05D004387 1.4e-27 126.3 65 92.3
MD11G1136600 Malus domestica HOM05D003665 ORTHO05D004387 1.4e-27 126.3 65 92.3
GSVIVG01025191001 Vitis vinifera HOM05D003665 ORTHO05D004387 1.4e-27 126.3 65 90.8
MBI05_g08786_MAGBIO Magnolia biondii HOM05D003665 ORTHO05D004387 1.8e-27 125.9 65 92.3
Oeu030188.3 Olea europaea HOM05D003665 ORTHO05D004387 1.8e-27 125.9 64 93.8
SalBow3G4611 Salvia bowleyana HOM05D003665 ORTHO05D004387 1.8e-27 125.9 65 90.8
Aqoxy4G03025 Aquilegia oxysepala HOM05D003665 ORTHO05D004387 2.4e-27 125.6 65 92.3
Cfa011312 Carpinus fangiana HOM05D003665 ORTHO05D004387 2.4e-27 125.6 65 92.3
Ca_01409_v3 Cicer arietinum L. HOM05D003665 ORTHO05D004387 2.4e-27 125.6 65 93.8
Cc00_g12880 Coffea canephora HOM05D003665 ORTHO05D004387 2.4e-27 125.6 65 90.8
Dinv09884 Davidia involucrata HOM05D003665 ORTHO05D004387 2.4e-27 125.6 65 92.3
Duzib168G1080 Durio zibethinus HOM05D003665 ORTHO05D004387 2.4e-27 125.6 65 92.3
Lj3g0004290 Lotus japonicus HOM05D003665 ORTHO05D004387 2.4e-27 125.6 68 88.2
Lalb_Chr22g0350251 Lupinus albus HOM05D003665 ORTHO05D004387 2.4e-27 125.6 65 92.3
VMungo1080G0406 Vigna mungo HOM05D003665 ORTHO05D004387 2.4e-27 125.6 65 92.3
CSS0007464 Camellia sinensis var. sinensis HOM05D003665 ORTHO05D004387 3.1e-27 125.2 65 90.8
AUR62020295 Chenopodium quinoa HOM05D003665 ORTHO05D004387 3.1e-27 125.2 65 90.8
HanXRQChr01g0019371 Helianthus annuus HOM05D003665 ORTHO05D004387 3.1e-27 125.2 65 92.3
Hma1.2p1_0058F.1_g032480 Hydrangea macrophylla HOM05D003665 ORTHO05D004387 3.1e-27 125.2 65 90.8
Lsat_1_v5_gn_1_64201 Lactuca sativa HOM05D003665 ORTHO05D004387 3.1e-27 125.2 65 92.3
Nitab4.5_0001195g0040 Nicotiana tabacum HOM05D003665 ORTHO05D004387 3.1e-27 125.2 64 92.2
Nitab4.5_0001997g0130 Nicotiana tabacum HOM05D003665 ORTHO05D004387 3.1e-27 125.2 64 92.2
SGA_v2.0_scaffold97G29239 Striga asiatica HOM05D003665 ORTHO05D004387 3.1e-27 125.2 65 90.8
CANSAT54G1114 Cannabis sativa HOM05D003665 ORTHO05D004387 4.0e-27 124.8 65 89.2
CAN.G479.67 Capsicum annuum HOM05D003665 ORTHO05D004387 4.0e-27 124.8 65 90.8
Ciclev10028088m.g Citrus clementina HOM05D003665 ORTHO05D004387 4.0e-27 124.8 65 90.8
THA.LOC104815747 Tarenaya hassleriana HOM05D003665 ORTHO05D004387 4.0e-27 124.8 65 89.2
Duzib170G0108 Durio zibethinus HOM05D003665 ORTHO05D004387 5.3e-27 124.4 65 90.8
Migut.D02227 Erythranthe guttata HOM05D003665 ORTHO05D004387 5.3e-27 124.4 65 89.2
Gohir.D05G103100 Gossypium hirsutum HOM05D003665 ORTHO05D004387 5.3e-27 124.4 65 90.8
Gorai.009G107400 Gossypium raimondii HOM05D003665 ORTHO05D004387 5.3e-27 124.4 65 90.8
Thecc.09G341400 Theobroma cacao HOM05D003665 ORTHO05D004387 5.3e-27 124.4 65 90.8
CSS0036787 Camellia sinensis var. sinensis HOM05D003665 ORTHO05D004387 6.9e-27 124.0 65 87.7
ECA238G1380 Erigeron canadensis HOM05D003665 ORTHO05D004387 6.9e-27 124.0 65 90.8
Glyma.13G325700 Glycine max HOM05D003665 ORTHO05D004387 6.9e-27 124.0 65 92.3
THA.LOC104826364 Tarenaya hassleriana HOM05D003665 ORTHO05D004387 6.9e-27 124.0 65 89.2
RcHm_v2.0_Chr5g0058821 Rosa chinensis HOM05D003665 ORTHO05D004387 9.0e-27 123.6 65 90.8
Ca_19262_v3 Cicer arietinum L. HOM05D003665 ORTHO05D004387 1.2e-26 123.2 65 90.8
Gohir.D08G215600 Gossypium hirsutum HOM05D003665 ORTHO05D004387 1.2e-26 123.2 65 89.2
Gorai.004G229200 Gossypium raimondii HOM05D003665 ORTHO05D004387 1.2e-26 123.2 65 89.2
Phvul.005G134800 Phaseolus vulgaris HOM05D003665 ORTHO05D004387 1.2e-26 123.2 65 90.8
SGA_v2.0_scaffold61G21127 Striga asiatica HOM05D003665 ORTHO05D004387 1.2e-26 123.2 65 89.2
CsaV3_1G014040 Cucumis sativus L. HOM05D003665 ORTHO05D004387 1.5e-26 122.9 65 90.8
Gohir.A03G033500 Gossypium hirsutum HOM05D003665 ORTHO05D004387 1.5e-26 122.9 65 89.2
Gohir.A08G198200 Gossypium hirsutum HOM05D003665 ORTHO05D004387 1.5e-26 122.9 65 87.7
Gohir.D03G134800 Gossypium hirsutum HOM05D003665 ORTHO05D004387 1.5e-26 122.9 65 89.2
Gorai.003G141900 Gossypium raimondii HOM05D003665 ORTHO05D004387 1.5e-26 122.9 65 89.2
Lalb_Chr19g0137231 Lupinus albus HOM05D003665 ORTHO05D004387 1.5e-26 122.9 68 88.2
PGR119G2069 Punica granatum HOM05D003665 ORTHO05D004387 1.5e-26 122.9 65 89.2
QL01p022122 Quercus lobata HOM05D003665 ORTHO05D004387 1.5e-26 122.9 69 84.1
C04p23090 Brassica napus HOM05D003665 ORTHO05D004387 2.0e-26 122.5 65 87.7
BolC4t23802H Brassica oleracea HOM05D003665 ORTHO05D004387 2.0e-26 122.5 65 87.7
Carub.0004s0931 Capsella rubella HOM05D003665 ORTHO05D004387 2.0e-26 122.5 65 89.2
CARHR121340 Cardamine hirsuta HOM05D003665 ORTHO05D004387 2.0e-26 122.5 65 89.2
CiPaw.13G113600 Carya illinoinensis HOM05D003665 ORTHO05D004387 2.0e-26 122.5 65 89.2
MELO3C004874.2 Cucumis melo HOM05D003665 ORTHO05D004387 2.0e-26 122.5 65 89.2
Thhalv10016386m.g Eutrema salsugineum HOM05D003665 ORTHO05D004387 2.0e-26 122.5 65 89.2
Peaxi162Scf00274g00347 Petunia axillaris HOM05D003665 ORTHO05D004387 2.0e-26 122.5 65 89.2
Psat5g278960 Pisum sativum HOM05D003665 ORTHO05D004387 2.0e-26 122.5 65 90.8
Sp4g11190 Schrenkiella parvula HOM05D003665 ORTHO05D004387 2.0e-26 122.5 65 89.2
TAR369G0153 Trochodendron aralioides HOM05D003665 ORTHO05D004387 2.6e-26 122.1 65 89.2
BcaC01g04965 Brassica carinata HOM05D003665 ORTHO05D004387 3.4e-26 121.7 65 87.7
A03p26380 Brassica napus HOM05D003665 ORTHO05D004387 3.4e-26 121.7 65 87.7
C03p31650 Brassica napus HOM05D003665 ORTHO05D004387 3.4e-26 121.7 65 87.7
BolC3t15507H Brassica oleracea HOM05D003665 ORTHO05D004387 3.4e-26 121.7 65 87.7
Lj3g0015527 Lotus japonicus HOM05D003665 ORTHO05D004387 3.4e-26 121.7 62 95.2
PGR102G1414 Punica granatum HOM05D003665 ORTHO05D004387 3.4e-26 121.7 65 86.2
HPP92_006598 Vanilla planifolia HOM05D003665 ORTHO05D004387 3.4e-26 121.7 66 84.8
CiPaw.14G080900 Carya illinoinensis HOM05D003665 ORTHO05D004387 4.5e-26 121.3 65 89.2
ClCG01G013730 Citrullus lanatus HOM05D003665 ORTHO05D004387 4.5e-26 121.3 65 87.7
Phvul.011G079600 Phaseolus vulgaris HOM05D003665 ORTHO05D004387 4.5e-26 121.3 65 87.7
Psat0s134g0040 Pisum sativum HOM05D003665 ORTHO05D004387 4.5e-26 121.3 65 87.7
AL4G21640 Arabidopsis lyrata HOM05D003665 ORTHO05D004387 5.8e-26 120.9 65 86.2
Medtr4g059000 Medicago truncatula HOM05D003665 ORTHO05D004387 5.8e-26 120.9 65 86.2
Peaxi162Scf00106g00431 Petunia axillaris HOM05D003665 ORTHO05D004387 5.8e-26 120.9 64 89.1
Prupe.6G102100 Prunus persica HOM05D003665 ORTHO05D004387 5.8e-26 120.9 65 87.7
Aa31LG5G7830 Aethionema arabicum HOM05D003665 ORTHO05D004387 7.6e-26 120.6 65 86.2
CDE08G1291 Ceratophyllum demersum HOM05D003665 ORTHO05D004387 7.6e-26 120.6 65 89.2
BcaB01g03101 Brassica carinata HOM05D003665 ORTHO05D004387 9.9e-26 120.2 65 86.2
BcaB06g25423 Brassica carinata HOM05D003665 ORTHO05D004387 9.9e-26 120.2 65 86.2
BraA03t11853Z Brassica rapa HOM05D003665 ORTHO05D004387 9.9e-26 120.2 65 86.2
Nn2g12882 Nelumbo nucifera HOM05D003665 ORTHO05D004387 9.9e-26 120.2 65 89.2
Sed0022671 Sechium edule HOM05D003665 ORTHO05D004387 9.9e-26 120.2 65 87.7
VMungo1127G1530 Vigna mungo HOM05D003665 ORTHO05D004387 9.9e-26 120.2 65 87.7
A07p18960 Brassica napus HOM05D003665 ORTHO05D004387 1.3e-25 119.8 65 86.2
BraA07t29601Z Brassica rapa HOM05D003665 ORTHO05D004387 1.3e-25 119.8 65 86.2
TWI31G1339 Tripterygium wilfordii HOM05D003665 ORTHO05D004387 1.3e-25 119.8 65 87.7
FvH4_3g32210 Fragaria vesca HOM05D003665 ORTHO05D004387 1.7e-25 119.4 65 87.7
FAN11G0686 Fragaria x ananassa HOM05D003665 ORTHO05D004387 1.7e-25 119.4 65 87.7
FAN21G1776 Fragaria x ananassa HOM05D003665 ORTHO05D004387 1.7e-25 119.4 65 87.7
FAN25G3303 Fragaria x ananassa HOM05D003665 ORTHO05D004387 1.7e-25 119.4 65 87.7
AT2G28390 Arabidopsis thaliana HOM05D003665 ORTHO05D004387 2.9e-25 118.6 65 86.2
PSO339G3164 Papaver somniferum HOM05D003665 ORTHO05D004387 2.9e-25 118.6 65 87.7
PSO384G0045 Papaver somniferum HOM05D003665 ORTHO05D004387 2.9e-25 118.6 65 87.7
arahy.Tifrunner.gnm1.ann1.567MYZ Arachis hypogaea HOM05D003665 ORTHO05D004387 1.1e-24 116.7 65 87.7
arahy.Tifrunner.gnm1.ann1.B5LWM3 Arachis hypogaea HOM05D003665 ORTHO05D004387 1.1e-24 116.7 65 87.7
FAN16G1206 Fragaria x ananassa HOM05D003665 ORTHO05D004387 1.4e-24 116.3 65 86.2
HanXRQChr14g0452781 Helianthus annuus HOM05D003665 ORTHO05D004387 2.4e-24 115.5 65 83.1
BcaB06g25420 Brassica carinata HOM05D003665 ORTHO05D004387 4.2e-24 114.8 65 86.2
Dinv32740 Davidia involucrata HOM05D003665 ORTHO05D004387 5.4e-24 114.4 57 94.7
Duzib084G1104 Durio zibethinus HOM05D003665 ORTHO05D004387 5.4e-24 114.4 64 84.4
SEGI_16973 Sequoiadendron giganteum HOM05D003665 ORTHO05D004387 5.4e-24 114.4 66 78.8
Os01g0976000 Oryza sativa ssp. japonica HOM05D003665 ORTHO05D004387 9.3e-24 113.6 65 81.5
Lsat_1_v5_gn_2_100120 Lactuca sativa HOM05D003665 ORTHO05D004387 2.1e-23 112.5 65 78.5
SEGI_12034 Sequoiadendron giganteum HOM05D003665 ORTHO05D004387 7.9e-23 110.5 68 76.5
Pp3c10_13820 Physcomitrium patens HOM05D003665 ORTHO05D004387 3.0e-22 108.6 65 75.4
arahy.Tifrunner.gnm1.ann1.IYQC31 Arachis hypogaea HOM05D003665 ORTHO05D004387 3.9e-22 108.2 107 57.9
arahy.Tifrunner.gnm1.ann1.RTB9TW Arachis hypogaea HOM05D003665 ORTHO05D004387 3.9e-22 108.2 107 57.9
Mapoly0115s0070 Marchantia polymorpha HOM05D003665 ORTHO05D004387 4.3e-21 104.8 65 73.8
Pp3c3_30360 Physcomitrium patens HOM05D003665 ORTHO05D004387 9.6e-21 103.6 65 72.3
AUR62037705 Chenopodium quinoa HOM05D003665 ORTHO05D004387 1.3e-20 103.2 83 65.1
CBR_g29308 Chara braunii HOM05D000019 ORTHO05D000002 1.6e-20 102.8 65 70.8
SMO356G0046 Selaginella moellendorffii HOM05D003665 ORTHO05D004387 2.1e-20 102.4 65 75.4
TWI79G0002 Tripterygium wilfordii HOM05D003665 ORTHO05D004387 2.8e-20 102.1 51 92.2
SHI09315 Sapria himalayana HOM05D003665 ORTHO05D004387 3.7e-20 101.7 52 92.3
Duzib235G1059 Durio zibethinus HOM05D003665 ORTHO05D004387 4.8e-20 101.3 65 76.9
AagrBONN_evm.TU.Sc2ySwM_117.1231 Anthoceros agrestis HOM05D003665 ORTHO05D004387 5.3e-19 97.8 65 67.7
AagrBONN_evm.TU.Sc2ySwM_228.3586 Anthoceros agrestis HOM05D003665 ORTHO05D004387 5.3e-19 97.8 65 67.7
Actinidia07137 Actinidia chinensis HOM05D003665 ORTHO05D004387 6.9e-19 97.4 48 95.8
Glyma.11G146000 Glycine max HOM05D003665 ORTHO05D004387 1.2e-15 86.7 48 83.3
Lalb_Chr22g0350671 Lupinus albus HOM05D003665 ORTHO05D004387 2.1e-12 75.9 43 86.0
unitig_899.g14918 Utricularia gibba HOM05D003665 ORTHO05D004387 2.1e-12 75.9 38 94.7
COL.COLO4_18330 Corchorus olitorius HOM05D003665 ORTHO05D004387 3.8e-09 65.1 67 55.2
VMungo1074G0001 Vigna mungo HOM05D003665 ORTHO05D004387 6.5e-09 64.3 32 93.8
Cre03.g154500 Chlamydomonas reinhardtii HOM05D003665 ORTHO05D004387 2.5e-08 62.4 50 56.0
MCO05G084 Micromonas commoda HOM05D003665 ORTHO05D004387 3.2e-08 62.0 59 44.1
CDE02G1163 Ceratophyllum demersum HOM05D003665 ORTHO05D004387 4.2e-08 61.6 65 53.8


User provided reference genes

Program Settings