Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_23048_v3 Cicer arietinum L. HOM05D004140 ORTHO05D018624 2.5e-84 315.5 165 100.0
Medtr7g030010 Medicago truncatula HOM05D004140 ORTHO05D006116 8.9e-42 174.1 125 76.8
Medtr7g038740 Medicago truncatula HOM05D004140 ORTHO05D006116 8.9e-42 174.1 125 76.8
Psat3g173320 Pisum sativum HOM05D004140 ORTHO05D006116 2.0e-41 172.9 128 75.8
TPR.G39122 Trifolium pratense HOM05D004140 ORTHO05D006116 6.6e-37 157.9 124 75.0
arahy.Tifrunner.gnm1.ann1.0JB8QE Arachis hypogaea HOM05D004140 ORTHO05D006116 1.5e-33 146.7 129 65.1
TWI77G1027 Tripterygium wilfordii HOM05D004140 ORTHO05D006116 9.9e-33 144.1 137 61.3
Lj2A137T30 Lonicera japonica HOM05D004140 ORTHO05D006116 1.7e-32 143.3 136 63.2
arahy.Tifrunner.gnm1.ann1.IX7NGG Arachis hypogaea HOM05D004140 ORTHO05D006116 2.9e-32 142.5 129 64.3
CANSAT80G0330 Cannabis sativa HOM05D004140 ORTHO05D006116 1.1e-31 140.6 130 61.5
vmacro14235 Vaccinium macrocarpon HOM05D004140 ORTHO05D006116 1.9e-31 139.8 145 60.0
Lj1g0011596 Lotus japonicus HOM05D004140 ORTHO05D006116 4.2e-31 138.7 141 59.6
Rhsim07G0139000 Rhododendron simsii HOM05D004140 ORTHO05D006116 5.4e-31 138.3 140 57.9
Cfa016609 Carpinus fangiana HOM05D004140 ORTHO05D006116 2.1e-30 136.3 134 60.4
Haze_19613 Corylus avellana HOM05D004140 ORTHO05D006116 2.7e-30 136.0 134 59.0
Atru.chr8.1534 Acer truncatum HOM05D004140 ORTHO05D006116 4.6e-30 135.2 137 62.0
CiPaw.09G014200 Carya illinoinensis HOM05D004140 ORTHO05D006116 4.6e-30 135.2 134 60.4
RcHm_v2.0_Chr3g0473691 Rosa chinensis HOM05D004140 ORTHO05D006116 1.7e-29 133.3 134 59.0
Cpa.g.sc5.17 Carica papaya HOM05D004140 ORTHO05D006116 5.1e-29 131.7 132 60.6
DCAR_013387 Daucus carota HOM05D004140 ORTHO05D006116 5.1e-29 131.7 133 57.9
FAN05G3313 Fragaria x ananassa HOM05D004140 ORTHO05D006116 8.7e-29 131.0 134 58.2
MELO3C009474.2 Cucumis melo HOM05D004140 ORTHO05D006116 1.1e-28 130.6 133 58.6
FAN05G2644 Fragaria x ananassa HOM05D004140 ORTHO05D006116 1.1e-28 130.6 134 58.2
FAN02G3405 Fragaria x ananassa HOM05D004140 ORTHO05D006116 1.5e-28 130.2 134 58.2
ClCG10G018960 Citrullus lanatus HOM05D004140 ORTHO05D006116 1.9e-28 129.8 133 58.6
Lalb_Chr07g0194001 Lupinus albus HOM05D004140 ORTHO05D006116 1.9e-28 129.8 133 57.9
QL07p038993 Quercus lobata HOM05D004140 ORTHO05D006116 1.9e-28 129.8 134 60.4
Hma1.2p1_0084F.1_g043830 Hydrangea macrophylla HOM05D004140 ORTHO05D006116 2.5e-28 129.4 136 57.4
Hma1.2p1_0820F.1_g223840 Hydrangea macrophylla HOM05D004140 ORTHO05D006116 2.5e-28 129.4 136 57.4
Peaxi162Scf01227g00030 Petunia axillaris HOM05D004140 ORTHO05D006116 2.5e-28 129.4 136 55.1
FAN14G5862 Fragaria x ananassa HOM05D004140 ORTHO05D006116 3.3e-28 129.0 145 54.5
Thecc.05G089300 Theobroma cacao HOM05D004140 ORTHO05D006116 3.3e-28 129.0 136 60.3
Glyma.11G176309 Glycine max HOM05D004140 ORTHO05D006116 5.6e-28 128.3 129 62.8
CsaV3_3G037290 Cucumis sativus L. HOM05D004140 ORTHO05D006116 9.6e-28 127.5 133 58.6
Phvul.008G154100 Phaseolus vulgaris HOM05D004140 ORTHO05D006116 9.6e-28 127.5 130 60.8
QL07p038742 Quercus lobata HOM05D004140 ORTHO05D006116 9.6e-28 127.5 134 59.7
Actinidia18162 Actinidia chinensis HOM05D004140 ORTHO05D006116 1.3e-27 127.1 151 53.6
Manes.08G025400 Manihot esculenta HOM05D004140 ORTHO05D006116 1.6e-27 126.7 138 57.2
Gohir.D04G099900 Gossypium hirsutum HOM05D004140 ORTHO05D006116 2.1e-27 126.3 132 56.1
Gorai.009G402800 Gossypium raimondii HOM05D004140 ORTHO05D006116 2.1e-27 126.3 132 56.1
DCAR_007754 Daucus carota HOM05D004140 ORTHO05D006116 3.6e-27 125.6 141 56.0
Actinidia14741 Actinidia chinensis HOM05D004140 ORTHO05D006116 4.8e-27 125.2 151 53.0
PGR142G4281 Punica granatum HOM05D004140 ORTHO05D006116 6.2e-27 124.8 134 56.7
Sed0020948 Sechium edule HOM05D004140 ORTHO05D006116 6.2e-27 124.8 133 58.6
COL.COLO4_29732 Corchorus olitorius HOM05D004140 ORTHO05D006116 1.1e-26 124.0 142 54.9
Duzib093G1424 Durio zibethinus HOM05D004140 ORTHO05D006116 2.4e-26 122.9 136 56.6
Gohir.A04G062800 Gossypium hirsutum HOM05D004140 ORTHO05D006116 2.4e-26 122.9 132 56.8
HPP92_005468 Vanilla planifolia HOM05D004140 ORTHO05D006116 2.4e-26 122.9 126 58.7
Cc00_g34730 Coffea canephora HOM05D004140 ORTHO05D006116 4.0e-26 122.1 136 53.7
RcHm_v2.0_Chr3g0473761 Rosa chinensis HOM05D004140 ORTHO05D006116 5.3e-26 121.7 133 54.1
Ciclev10013333m.g Citrus clementina HOM05D004140 ORTHO05D006116 1.5e-25 120.2 133 55.6
Glyma.01G077300 Glycine max HOM05D004140 ORTHO05D006116 1.5e-25 120.2 125 60.0
MD12G1036400 Malus domestica HOM05D004140 ORTHO05D006116 2.6e-25 119.4 137 54.7
Solyc04g049130.4 Solanum lycopersicum HOM05D004140 ORTHO05D006116 2.6e-25 119.4 134 54.5
CSS0000051 Camellia sinensis var. sinensis HOM05D004140 ORTHO05D006116 3.4e-25 119.0 80 75.0
MD14G1023200 Malus domestica HOM05D004140 ORTHO05D006116 5.8e-25 118.2 139 54.0
VMungo1383G3240 Vigna mungo HOM05D004140 ORTHO05D006116 5.8e-25 118.2 131 57.3
BcaC06g32093 Brassica carinata HOM05D004140 ORTHO05D006116 9.9e-25 117.5 132 53.0
BraA02t04791Z Brassica rapa HOM05D004140 ORTHO05D006116 9.9e-25 117.5 130 56.2
BolC9t60037H Brassica oleracea HOM05D004140 ORTHO05D006116 1.7e-24 116.7 137 54.0
Sopen04g018570 Solanum pennellii HOM05D004140 ORTHO05D006116 1.7e-24 116.7 134 53.7
C09p73020 Brassica napus HOM05D004140 ORTHO05D006116 2.2e-24 116.3 137 54.0
Nn6g34895 Nelumbo nucifera HOM05D004140 ORTHO05D006116 2.2e-24 116.3 139 51.8
Nitab4.5_0008893g0010 Nicotiana tabacum HOM05D004140 ORTHO05D006116 2.2e-24 116.3 131 54.2
Lsat_1_v5_gn_5_164821 Lactuca sativa HOM05D004140 ORTHO05D006116 2.9e-24 115.9 145 50.3
AL6G13480 Arabidopsis lyrata HOM05D004140 ORTHO05D006116 3.8e-24 115.5 138 50.0
HanXRQChr01g0001941 Helianthus annuus HOM05D004140 ORTHO05D006116 3.8e-24 115.5 144 51.4
Sp6g38830 Schrenkiella parvula HOM05D004140 ORTHO05D006116 3.8e-24 115.5 137 48.9
SalBow3G3032 Salvia bowleyana HOM05D004140 ORTHO05D006116 4.9e-24 115.2 136 54.4
TAR633G1381 Trochodendron aralioides HOM05D004140 ORTHO05D006116 4.9e-24 115.2 137 51.8
Nitab4.5_0000071g0150 Nicotiana tabacum HOM05D004140 ORTHO05D006116 8.4e-24 114.4 131 54.2
A10p32220 Brassica napus HOM05D004140 ORTHO05D006116 1.1e-23 114.0 136 50.0
BraA10t45265Z Brassica rapa HOM05D004140 ORTHO05D006116 1.1e-23 114.0 136 50.0
Dinv31688 Davidia involucrata HOM05D004140 ORTHO05D006116 1.1e-23 114.0 64 84.4
Eucgr.K02037 Eucalyptus grandis HOM05D004140 ORTHO05D006116 1.4e-23 113.6 139 51.1
HanXRQChr05g0163581 Helianthus annuus HOM05D004140 ORTHO05D006116 1.4e-23 113.6 139 51.1
Potri.004G090400 Populus trichocarpa HOM05D004140 ORTHO05D006116 2.4e-23 112.8 131 51.9
AT5G03900 Arabidopsis thaliana HOM05D004140 ORTHO05D006116 3.2e-23 112.5 138 47.8
C02p01600 Brassica napus HOM05D004140 ORTHO05D006116 4.2e-23 112.1 128 53.1
BolC2t06125H Brassica oleracea HOM05D004140 ORTHO05D006116 4.2e-23 112.1 128 53.1
THA.LOC104823220 Tarenaya hassleriana HOM05D004140 ORTHO05D006116 4.2e-23 112.1 133 52.6
CARHR209360 Cardamine hirsuta HOM05D004140 ORTHO05D006116 9.3e-23 110.9 137 49.6
AUR62028518 Chenopodium quinoa HOM05D004140 ORTHO05D006116 9.3e-23 110.9 74 71.6
SGA_v2.0_scaffold13G06716 Striga asiatica HOM05D004140 ORTHO05D006116 9.3e-23 110.9 138 54.3
Migut.J01039 Erythranthe guttata HOM05D004140 ORTHO05D006116 1.2e-22 110.5 131 55.7
RcHm_v2.0_Chr3g0473731 Rosa chinensis HOM05D004140 ORTHO05D006116 1.6e-22 110.2 139 50.4
PSO384G3764 Papaver somniferum HOM05D004140 ORTHO05D006116 2.1e-22 109.8 151 45.0
Aqoxy2G01189 Aquilegia oxysepala HOM05D004140 ORTHO05D006116 2.7e-22 109.4 129 49.6
CAN.G1407.2 Capsicum annuum HOM05D004140 ORTHO05D006116 2.7e-22 109.4 130 50.8
FvH4_6g18760 Fragaria vesca HOM05D004140 ORTHO05D006116 2.7e-22 109.4 125 54.4
FAN14G0820 Fragaria x ananassa HOM05D004140 ORTHO05D006116 2.7e-22 109.4 125 54.4
CAN.G2500.2 Capsicum annuum HOM05D004140 ORTHO05D018624 3.5e-22 109.0 127 52.0
BcaB05g21796 Brassica carinata HOM05D004140 ORTHO05D006116 4.6e-22 108.6 115 53.0
FAN02G1460 Fragaria x ananassa HOM05D004140 ORTHO05D018624 4.6e-22 108.6 123 55.3
Sabra04G0060700 Salix brachista HOM05D004140 ORTHO05D006116 1.3e-21 107.1 136 52.2
Carub.0006s0285 Capsella rubella HOM05D004140 ORTHO05D006116 1.8e-21 106.7 138 48.6
FAN05G3929 Fragaria x ananassa HOM05D004140 ORTHO05D018624 1.8e-21 106.7 125 53.6
Aa31LG1G21380 Aethionema arabicum HOM05D004140 ORTHO05D006116 2.3e-21 106.3 139 46.8
Hund19931 Selenicereus undatus HOM05D004140 ORTHO05D006116 2.3e-21 106.3 72 70.8
Thhalv10013253m.g Eutrema salsugineum HOM05D004140 ORTHO05D006116 3.0e-21 105.9 138 45.7
FAN05G4146 Fragaria x ananassa HOM05D004140 ORTHO05D006116 3.0e-21 105.9 125 53.6
ECA248G2777 Erigeron canadensis HOM05D004140 ORTHO05D000452 5.1e-21 105.1 89 62.9
unitig_578.g16025 Utricularia gibba HOM05D004140 ORTHO05D006116 5.1e-21 105.1 136 50.0
Migut.J01040 Erythranthe guttata HOM05D004140 ORTHO05D006116 6.7e-21 104.8 72 73.6
PSO339G4989 Papaver somniferum HOM05D004140 ORTHO05D006116 6.7e-21 104.8 154 45.5
AUR62006183 Chenopodium quinoa HOM05D004140 ORTHO05D006116 1.5e-20 103.6 66 74.2
Ah.15g090870 Amaranthus hybridus HOM05D004140 ORTHO05D006116 7.4e-20 101.3 126 50.0
ATR0776G070 Amborella trichopoda HOM05D004140 ORTHO05D006116 2.8e-19 99.4 142 45.8
Zm00001eb242770 Zea mays HOM05D004140 ORTHO05D006116 2.8e-19 99.4 67 73.1
CDE06G1324 Ceratophyllum demersum HOM05D004140 ORTHO05D006116 1.4e-18 97.1 60 76.7
Os02g0533000 Oryza sativa ssp. japonica HOM05D004140 ORTHO05D006116 5.3e-18 95.1 65 73.8
FvH4_6g18751 Fragaria vesca HOM05D004140 ORTHO05D018624 8.4e-16 87.8 114 48.2
SMO137G0276 Selaginella moellendorffii HOM05D004140 ORTHO05D006116 9.3e-15 84.3 69 59.4
Peaxi162Scf00858g00312 Petunia axillaris HOM05D004140 ORTHO05D006116 1.6e-14 83.6 60 73.3
GSVIVG01033846001 Vitis vinifera HOM05D004140 ORTHO05D006116 2.1e-14 83.2 46 89.1
Nitab4.5_0004212g0030 Nicotiana tabacum HOM05D004140 ORTHO05D006116 6.0e-14 81.6 61 67.2
DCAR_020746 Daucus carota HOM05D004140 ORTHO05D006116 1.8e-13 80.1 59 61.0
Sc02g0000260 Simmondsia chinensis HOM05D004140 ORTHO05D006116 1.9e-12 76.6 46 84.8
Pp3c24_800 Physcomitrium patens HOM05D004140 ORTHO05D006116 5.6e-12 75.1 60 65.0
Cc06_g05780 Coffea canephora HOM05D004140 ORTHO05D006116 9.6e-12 74.3 46 76.1
Mapoly0014s0147 Marchantia polymorpha HOM05D004140 ORTHO05D006116 1.6e-11 73.6 128 39.1
CBR_g12587 Chara braunii HOM05D004140 ORTHO05D006116 4.8e-11 72.0 60 56.7
AagrBONN_evm.TU.Sc2ySwM_117.4009 Anthoceros agrestis HOM05D004140 ORTHO05D006116 6.2e-11 71.6 60 56.7
EL10Ac7g16915 Beta vulgaris HOM05D004140 ORTHO05D006116 5.8e-09 65.1 46 60.9
RcHm_v2.0_Chr6g0257921 Rosa chinensis HOM05D004140 ORTHO05D006116 7.6e-09 64.7 46 69.6
BcaC05g27055 Brassica carinata HOM05D004140 ORTHO05D018624 4.9e-08 62.0 37 78.4
C05p29120 Brassica napus HOM05D004140 ORTHO05D018624 4.9e-08 62.0 37 78.4
BolC5t31642H Brassica oleracea HOM05D004140 ORTHO05D018624 4.9e-08 62.0 37 78.4
C02p01250 Brassica napus HOM05D004140 ORTHO05D010099 6.5e-08 61.6 43 72.1
Cre07.g338350 Chlamydomonas reinhardtii HOM05D004140 ORTHO05D006116 1.1e-07 60.8 57 50.9


User provided reference genes

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