Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_23028_v3 Cicer arietinum L. HOM05D006014 ORTHO05D007608 1.2e-84 316.6 173 100.0
Ca_23030_v3 Cicer arietinum L. HOM05D006014 ORTHO05D007608 1.2e-84 316.6 173 100.0
Psat4g136440 Pisum sativum HOM05D006014 ORTHO05D007608 1.1e-69 266.9 175 83.4
TPR.G28172 Trifolium pratense HOM05D006014 ORTHO05D007608 1.2e-68 263.5 172 87.8
Medtr8g061350 Medicago truncatula HOM05D006014 ORTHO05D007608 1.7e-67 259.6 175 85.7
Glyma.06G236200 Glycine max HOM05D006014 ORTHO05D007608 5.6e-63 244.6 178 77.5
Lj3g0022855 Lotus japonicus HOM05D006014 ORTHO05D007608 4.0e-61 238.4 178 75.8
Glyma.12G162300 Glycine max HOM05D006014 ORTHO05D007608 1.4e-58 229.9 179 74.9
Phvul.011G162800 Phaseolus vulgaris HOM05D006014 ORTHO05D007608 7.1e-58 227.6 172 75.6
VMungo1127G0848 Vigna mungo HOM05D006014 ORTHO05D007608 1.0e-56 223.8 176 72.7
Lalb_Chr07g0182891 Lupinus albus HOM05D006014 ORTHO05D007608 4.3e-55 218.4 180 68.3
CANSAT35G1465 Cannabis sativa HOM05D006014 ORTHO05D007608 6.2e-54 214.5 174 69.5
arahy.Tifrunner.gnm1.ann1.FY4UJ9 Arachis hypogaea HOM05D006014 ORTHO05D007608 2.9e-51 205.7 215 59.5
ClCG11G017820 Citrullus lanatus HOM05D006014 ORTHO05D007608 5.0e-51 204.9 178 67.4
FAN21G0470 Fragaria x ananassa HOM05D006014 ORTHO05D007608 8.4e-51 204.1 172 70.9
Manes.15G089600 Manihot esculenta HOM05D006014 ORTHO05D007608 1.1e-50 203.8 182 67.6
GSVIVG01014290001 Vitis vinifera HOM05D006014 ORTHO05D007608 1.4e-50 203.4 166 69.9
FvH4_3g19430 Fragaria vesca HOM05D006014 ORTHO05D007608 1.9e-50 203.0 172 70.9
FAN11G2300 Fragaria x ananassa HOM05D006014 ORTHO05D007608 1.9e-50 203.0 172 70.9
Nitab4.5_0003033g0060 Nicotiana tabacum HOM05D006014 ORTHO05D007608 1.9e-50 203.0 171 66.7
QL08p024005 Quercus lobata HOM05D006014 ORTHO05D007608 2.5e-50 202.6 175 69.1
Sed0004006 Sechium edule HOM05D006014 ORTHO05D007608 2.5e-50 202.6 169 71.0
FAN25G0078 Fragaria x ananassa HOM05D006014 ORTHO05D007608 3.2e-50 202.2 172 69.8
Thecc.07G096300 Theobroma cacao HOM05D006014 ORTHO05D007608 4.2e-50 201.8 183 63.9
RcHm_v2.0_Chr5g0032711 Rosa chinensis HOM05D006014 ORTHO05D007608 7.1e-50 201.1 171 69.6
MD03G1232600 Malus domestica HOM05D006014 ORTHO05D007608 9.3e-50 200.7 178 65.2
MD11G1253300 Malus domestica HOM05D006014 ORTHO05D007608 1.6e-49 199.9 180 64.4
Gohir.A04G035600 Gossypium hirsutum HOM05D006014 ORTHO05D007608 7.9e-49 197.6 174 66.1
Haze_09409 Corylus avellana HOM05D005607 ORTHO05D008142 1.0e-48 197.2 162 67.9
Gorai.009G375600 Gossypium raimondii HOM05D006014 ORTHO05D007608 2.3e-48 196.1 173 65.3
Ciclev10009636m.g Citrus clementina HOM05D006014 ORTHO05D007608 8.7e-48 194.1 171 64.9
Gohir.D05G347800 Gossypium hirsutum HOM05D006014 ORTHO05D007608 8.7e-48 194.1 173 64.7
Cc05_g11740 Coffea canephora HOM05D006014 ORTHO05D007608 1.5e-47 193.4 171 66.1
Prupe.4G176000 Prunus persica HOM05D006014 ORTHO05D007608 1.5e-47 193.4 186 65.6
Hma1.2p1_1411F.1_g281760 Hydrangea macrophylla HOM05D006014 ORTHO05D007608 1.9e-47 193.0 176 64.2
CiPaw.11G167800 Carya illinoinensis HOM05D006014 ORTHO05D007608 2.5e-47 192.6 141 74.5
CsaV3_4G033460 Cucumis sativus L. HOM05D006014 ORTHO05D007608 2.5e-47 192.6 178 64.6
TWI38G2086 Tripterygium wilfordii HOM05D006014 ORTHO05D007608 2.5e-47 192.6 168 64.9
TAR626G1430 Trochodendron aralioides HOM05D006014 ORTHO05D007608 2.5e-47 192.6 175 67.4
CSS0037767 Camellia sinensis var. sinensis HOM05D006014 ORTHO05D007608 3.3e-47 192.2 167 67.1
Sabra16G0259700 Salix brachista HOM05D006014 ORTHO05D007608 4.3e-47 191.8 165 64.2
Solyc07g062870.3 Solanum lycopersicum HOM05D006014 ORTHO05D007608 4.3e-47 191.8 169 66.3
Sopen07g031070 Solanum pennellii HOM05D006014 ORTHO05D007608 4.3e-47 191.8 169 66.3
MELO3C025609.2 Cucumis melo HOM05D006014 ORTHO05D007608 7.4e-47 191.0 178 64.0
Dinv14938 Davidia involucrata HOM05D006014 ORTHO05D007608 7.4e-47 191.0 178 64.0
Potri.001G396600 Populus trichocarpa HOM05D006014 ORTHO05D007608 7.4e-47 191.0 165 64.8
COL.COLO4_03477 Corchorus olitorius HOM05D006014 ORTHO05D007608 1.3e-46 190.3 178 62.4
PGSC0003DMG400012405 Solanum tuberosum HOM05D006014 ORTHO05D007608 2.8e-46 189.1 170 65.9
Lsat_1_v5_gn_5_128220 Lactuca sativa HOM05D006014 ORTHO05D007608 6.3e-46 188.0 175 62.3
Eucgr.F01167 Eucalyptus grandis HOM05D006014 ORTHO05D007608 8.2e-46 187.6 180 65.6
Nitab4.5_0013317g0010 Nicotiana tabacum HOM05D006014 ORTHO05D007608 1.4e-45 186.8 163 65.6
Peaxi162Scf00069g01737 Petunia axillaris HOM05D006014 ORTHO05D007608 1.4e-45 186.8 176 63.6
PGR083G0398 Punica granatum HOM05D006014 ORTHO05D007608 1.8e-45 186.4 171 64.3
Nn1g04203 Nelumbo nucifera HOM05D006014 ORTHO05D007608 3.1e-45 185.7 177 62.7
arahy.Tifrunner.gnm1.ann1.QT5AN8 Arachis hypogaea HOM05D006014 ORTHO05D007608 4.1e-45 185.3 264 47.7
TAR624G0768 Trochodendron aralioides HOM05D006014 ORTHO05D007608 2.6e-44 182.6 140 70.7
MSTRG.12894 Avicennia marina HOM05D006014 ORTHO05D007608 1.7e-43 179.9 171 62.6
Aqoxy1G02326 Aquilegia oxysepala HOM05D006014 ORTHO05D007608 2.2e-43 179.5 181 60.2
DCAR_019570 Daucus carota HOM05D006014 ORTHO05D007608 3.8e-43 178.7 173 59.5
Duzib170G0605 Durio zibethinus HOM05D006014 ORTHO05D007608 3.8e-43 178.7 180 60.6
Sc03g0010200 Simmondsia chinensis HOM05D006014 ORTHO05D007608 3.8e-43 178.7 173 64.7
A05p34280 Brassica napus HOM05D006014 ORTHO05D007608 5.0e-43 178.3 184 59.8
BraA05t22249Z Brassica rapa HOM05D006014 ORTHO05D007608 5.0e-43 178.3 184 59.8
CARHR090180 Cardamine hirsuta HOM05D006014 ORTHO05D007608 6.5e-43 177.9 178 62.4
Migut.H01957 Erythranthe guttata HOM05D006014 ORTHO05D007608 6.5e-43 177.9 167 62.3
BcaB06g29543 Brassica carinata HOM05D006014 ORTHO05D007608 1.4e-42 176.8 184 59.2
A01p38830 Brassica napus HOM05D006014 ORTHO05D007608 1.9e-42 176.4 177 60.5
BraA01t03929Z Brassica rapa HOM05D006014 ORTHO05D007608 1.9e-42 176.4 177 60.5
A03p39200 Brassica napus HOM05D006014 ORTHO05D007608 2.5e-42 176.0 178 61.2
C05p52040 Brassica napus HOM05D006014 ORTHO05D007608 3.2e-42 175.6 184 58.7
Oeu051088.1 Olea europaea HOM05D006014 ORTHO05D007608 3.2e-42 175.6 163 63.8
C01p49380 Brassica napus HOM05D006014 ORTHO05D007608 4.2e-42 175.3 179 59.8
ECA234G0345 Erigeron canadensis HOM05D006014 ORTHO05D007608 4.2e-42 175.3 173 60.1
PSO675G1148 Papaver somniferum HOM05D006014 ORTHO05D007608 4.2e-42 175.3 181 61.3
THA.LOC104815561 Tarenaya hassleriana HOM05D006014 ORTHO05D007608 4.2e-42 175.3 177 60.5
BolC1t04895H Brassica oleracea HOM05D006014 ORTHO05D007608 5.5e-42 174.9 179 59.8
PSO541G1420 Papaver somniferum HOM05D006014 ORTHO05D007608 7.2e-42 174.5 181 61.3
Sp3g13400 Schrenkiella parvula HOM05D006014 ORTHO05D007608 7.2e-42 174.5 185 61.1
BraA03t13069Z Brassica rapa HOM05D006014 ORTHO05D007608 9.4e-42 174.1 178 60.7
BcaB04g20944 Brassica carinata HOM05D006014 ORTHO05D007608 1.6e-41 173.3 173 61.8
Cfa020606 Carpinus fangiana HOM05D006014 ORTHO05D007608 3.6e-41 172.2 112 78.6
AUR62036161 Chenopodium quinoa HOM05D006014 ORTHO05D007608 3.6e-41 172.2 171 60.8
AL3G27580 Arabidopsis lyrata HOM05D006014 ORTHO05D007608 4.6e-41 171.8 157 65.0
AT3G15190 Arabidopsis thaliana HOM05D006014 ORTHO05D007608 7.9e-41 171.0 169 62.1
CDE10G0058 Ceratophyllum demersum HOM05D006014 ORTHO05D007608 7.9e-41 171.0 167 60.5
CDE10G1292 Ceratophyllum demersum HOM05D006014 ORTHO05D007608 1.8e-40 169.9 166 60.8
Thhalv10021521m.g Eutrema salsugineum HOM05D006014 ORTHO05D007608 1.8e-40 169.9 149 67.1
SalBow8G3070 Salvia bowleyana HOM05D006014 ORTHO05D007608 1.8e-40 169.9 171 60.2
AUR62019472 Chenopodium quinoa HOM05D006014 ORTHO05D007608 3.0e-40 169.1 171 60.8
Ah.06g184580 Amaranthus hybridus HOM05D006014 ORTHO05D007608 5.1e-40 168.3 171 59.6
EL10Ac4g08237 Beta vulgaris HOM05D006014 ORTHO05D007608 5.1e-40 168.3 174 60.3
HanXRQChr10g0302621 Helianthus annuus HOM05D006014 ORTHO05D007608 5.1e-40 168.3 175 58.9
Oeu037371.1 Olea europaea HOM05D006014 ORTHO05D007608 5.1e-40 168.3 159 62.9
Aa31LG8G2390 Aethionema arabicum HOM05D006014 ORTHO05D007608 6.7e-40 167.9 181 56.9
Carub.0003s1484 Capsella rubella HOM05D006014 ORTHO05D007608 1.5e-39 166.8 165 61.2
Nitab4.5_0000332g0180 Nicotiana tabacum HOM05D006014 ORTHO05D007608 3.3e-39 165.6 173 58.4
Sed0026173 Sechium edule HOM05D006014 ORTHO05D007608 3.3e-39 165.6 168 60.1
BcaC01g03887 Brassica carinata HOM05D006014 ORTHO05D007608 4.3e-39 165.2 115 75.7
BolC3t17032H Brassica oleracea HOM05D006014 ORTHO05D007608 4.3e-39 165.2 115 75.7
Nitab4.5_0002330g0100 Nicotiana tabacum HOM05D006014 ORTHO05D007608 7.4e-39 164.5 188 55.3
Hund04492 Selenicereus undatus HOM05D006014 ORTHO05D007608 2.8e-38 162.5 175 57.7
C03p47570 Brassica napus HOM05D006014 ORTHO05D007608 6.3e-38 161.4 149 61.7
MBI07_g30170_MAGBIO Magnolia biondii HOM05D006014 ORTHO05D007608 8.2e-38 161.0 128 66.4
unitig_749.g13531 Utricularia gibba HOM05D005607 ORTHO05D008142 3.1e-37 159.1 152 63.2
Actinidia35240 Actinidia chinensis HOM05D006014 ORTHO05D007608 3.4e-36 155.6 107 79.4
ATR0737G141 Amborella trichopoda HOM05D006014 ORTHO05D007608 2.2e-35 152.9 114 71.9
Lj3g0017472 Lotus japonicus HOM05D006014 ORTHO05D007608 5.0e-35 151.8 132 65.9
TWI39G1175 Tripterygium wilfordii HOM05D006014 ORTHO05D007608 5.0e-35 151.8 114 69.3
SEGI_01083 Sequoiadendron giganteum HOM05D006014 ORTHO05D007608 4.7e-33 145.2 170 55.3
Rhsim04G0022600 Rhododendron simsii HOM05D006014 ORTHO05D007608 1.4e-32 143.7 183 53.6
Mapoly0009s0159 Marchantia polymorpha HOM05D006014 ORTHO05D007608 2.4e-29 132.9 181 50.3
Zm00001eb360330 Zea mays HOM05D006014 ORTHO05D007608 2.0e-28 129.8 161 53.4
Os01g0678600 Oryza sativa ssp. japonica HOM05D006014 ORTHO05D007608 3.5e-28 129.0 130 58.5
Lj8A154T77 Lonicera japonica HOM05D006014 ORTHO05D007608 3.8e-27 125.6 181 47.5
Pp3c24_17080 Physcomitrium patens HOM05D006014 ORTHO05D007608 1.8e-24 116.7 121 57.9
vmacro09523 Vaccinium macrocarpon HOM05D006014 ORTHO05D007608 1.8e-24 116.7 83 69.9
CBR_g30802 Chara braunii HOM05D006014 ORTHO05D007608 2.6e-23 112.8 99 61.6
AagrBONN_evm.TU.Sc2ySwM_344.3794 Anthoceros agrestis HOM05D006014 ORTHO05D007608 4.4e-23 112.1 172 45.9
SGA_v2.0_scaffold70G23686 Striga asiatica HOM05D006014 ORTHO05D007608 5.7e-23 111.7 337 31.8
Pp3c20_13390 Physcomitrium patens HOM05D006014 ORTHO05D007608 1.7e-22 110.2 140 48.6
BcaC09g48477 Brassica carinata HOM05D006014 ORTHO05D007608 2.6e-20 102.8 138 52.2
Cre12.g494750 Chlamydomonas reinhardtii HOM05D006014 ORTHO05D007608 1.0e-16 90.9 110 48.2
CBR_g39307 Chara braunii HOM05D006014 ORTHO05D007608 1.2e-15 87.4 75 61.3
Dinv20203 Davidia involucrata HOM05D006014 ORTHO05D007608 2.0e-15 86.7 96 58.3
Gohir.A13G146850 Gossypium hirsutum HOM05D006014 ORTHO05D007608 3.1e-13 79.3 73 60.3
Cpa.g.sc131.85 Carica papaya HOM05D006014 ORTHO05D007608 3.2e-10 69.3 103 54.4
MCO10G118 Micromonas commoda HOM05D006014 ORTHO05D007608 3.2e-10 69.3 81 48.1
HPP92_010061 Vanilla planifolia HOM05D006014 ORTHO05D007608 5.5e-10 68.6 73 57.5
QL11p029078 Quercus lobata HOM05D006014 ORTHO05D013998 1.2e-07 60.8 82 51.2
Atru.chr2.2408 Acer truncatum HOM05D006014 ORTHO05D007608 1.7e-06 57.0 42 76.2


User provided reference genes

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