Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_22955_v3 Cicer arietinum L. HOM05D004475 ORTHO05D005235 7.5e-59 230.3 118 100.0
Medtr7g090890 Medicago truncatula HOM05D004475 ORTHO05D005235 6.0e-40 167.5 117 78.6
TPR.G32720 Trifolium pratense HOM05D004475 ORTHO05D005235 1.1e-38 163.3 116 75.9
Psat0s5127g0040 Pisum sativum HOM05D004475 ORTHO05D005235 5.4e-33 144.4 118 71.2
VMungo1383G1580 Vigna mungo HOM05D004475 ORTHO05D005235 1.2e-27 126.7 115 66.1
Glyma.03G133200 Glycine max HOM05D004475 ORTHO05D005235 1.5e-27 126.3 115 66.1
Glyma.19G135000 Glycine max HOM05D004475 ORTHO05D005235 9.9e-27 123.6 115 65.2
Phvul.001G128700 Phaseolus vulgaris HOM05D004475 ORTHO05D005235 2.1e-24 115.9 112 62.5
Lj1g0003764 Lotus japonicus HOM05D004475 ORTHO05D005235 1.5e-22 109.8 113 59.3
QL07p004070 Quercus lobata HOM05D004475 ORTHO05D005235 7.6e-19 97.4 118 54.2
Dinv39670 Davidia involucrata HOM05D004475 ORTHO05D005235 3.2e-17 92.0 114 48.2
GSVIVG01005040001 Vitis vinifera HOM05D004475 ORTHO05D005235 4.2e-17 91.7 108 50.0
arahy.Tifrunner.gnm1.ann1.QEH0EE Arachis hypogaea HOM05D004475 ORTHO05D005235 7.9e-16 87.4 121 51.2
arahy.Tifrunner.gnm1.ann1.65IVB9 Arachis hypogaea HOM05D004475 ORTHO05D005235 6.7e-15 84.3 121 52.1
arahy.Tifrunner.gnm1.ann1.AU6CR8 Arachis hypogaea HOM05D004475 ORTHO05D005235 3.3e-14 82.0 117 51.3
arahy.Tifrunner.gnm1.ann1.Y19QZX Arachis hypogaea HOM05D004475 ORTHO05D005235 3.3e-14 82.0 117 51.3
TAR369G1128 Trochodendron aralioides HOM05D004475 ORTHO05D005235 3.3e-14 82.0 111 47.7
Glyma.10G001550 Glycine max HOM05D004475 ORTHO05D005235 7.4e-14 80.9 77 59.7
Dinv18682 Davidia involucrata HOM05D004475 ORTHO05D005235 1.6e-13 79.7 106 46.2
Atru.chr1.1194 Acer truncatum HOM05D004475 ORTHO05D005235 2.8e-13 79.0 118 44.9
Actinidia38137 Actinidia chinensis HOM05D004475 ORTHO05D005235 1.1e-12 77.0 110 44.5
Lalb_Chr01g0017241 Lupinus albus HOM05D004475 ORTHO05D005235 1.4e-12 76.6 147 40.8
EL10Ac3g07152 Beta vulgaris HOM05D004475 ORTHO05D005235 2.4e-12 75.9 109 47.7
Gorai.003G086800 Gossypium raimondii HOM05D004475 ORTHO05D005235 5.3e-12 74.7 117 41.0
Gohir.D03G073000 Gossypium hirsutum HOM05D004475 ORTHO05D005235 9.0e-12 73.9 117 41.0
Gohir.A02G105902 Gossypium hirsutum HOM05D004475 ORTHO05D005235 2.0e-11 72.8 114 39.5
Thecc.04G085100 Theobroma cacao HOM05D004475 ORTHO05D005235 2.0e-11 72.8 112 42.0
Ciclev10005778m.g Citrus clementina HOM05D004475 ORTHO05D005235 2.6e-11 72.4 117 41.9
PSO541G2072 Papaver somniferum HOM05D004475 ORTHO05D005235 4.5e-11 71.6 116 37.9
Nn7g36424 Nelumbo nucifera HOM05D004475 ORTHO05D005235 5.8e-11 71.2 111 42.3
A09p50200 Brassica napus HOM05D004475 ORTHO05D005235 1.3e-10 70.1 117 41.0
BraA09t40470Z Brassica rapa HOM05D004475 ORTHO05D005235 1.3e-10 70.1 117 41.0
Cpa.g.sc182.27 Carica papaya HOM05D004475 ORTHO05D005235 1.3e-10 70.1 116 42.2
AUR62024523 Chenopodium quinoa HOM05D004475 ORTHO05D005235 1.3e-10 70.1 117 44.4
AUR62026115 Chenopodium quinoa HOM05D004475 ORTHO05D005235 1.7e-10 69.7 111 44.1
MELO3C026314.2 Cucumis melo HOM05D004475 ORTHO05D005235 1.7e-10 69.7 125 41.6
Aqoxy1G03236 Aquilegia oxysepala HOM05D004475 ORTHO05D005235 2.2e-10 69.3 120 41.7
BcaB02g07614 Brassica carinata HOM05D004475 ORTHO05D005235 2.2e-10 69.3 117 40.2
BcaC07g40061 Brassica carinata HOM05D004475 ORTHO05D005235 2.2e-10 69.3 119 41.2
Eucgr.A02304 Eucalyptus grandis HOM05D004475 ORTHO05D005235 2.9e-10 68.9 118 40.7
Thhalv10006224m.g Eutrema salsugineum HOM05D004475 ORTHO05D005235 3.8e-10 68.6 116 42.2
Sp5g05320 Schrenkiella parvula HOM05D004475 ORTHO05D005235 3.8e-10 68.6 116 41.4
Hund24650 Selenicereus undatus HOM05D004475 ORTHO05D005235 3.8e-10 68.6 117 40.2
vmacro21959 Vaccinium macrocarpon HOM05D004475 ORTHO05D005235 3.8e-10 68.6 118 38.1
Sed0026196 Sechium edule HOM05D004475 ORTHO05D005235 4.9e-10 68.2 120 40.8
COL.COLO4_31106 Corchorus olitorius HOM05D004475 ORTHO05D005235 6.4e-10 67.8 115 40.0
Aa31LG10G12150 Aethionema arabicum HOM05D004475 ORTHO05D005235 8.4e-10 67.4 114 37.7
C08p32680 Brassica napus HOM05D004475 ORTHO05D005235 8.4e-10 67.4 117 39.3
Nitab4.5_0000082g0290 Nicotiana tabacum HOM05D004475 ORTHO05D005235 8.4e-10 67.4 111 43.2
Peaxi162Scf00002g00359 Petunia axillaris HOM05D004475 ORTHO05D005235 1.1e-09 67.0 111 42.3
CSS0012266 Camellia sinensis var. sinensis HOM05D004475 ORTHO05D005235 1.4e-09 66.6 111 41.4
Cfa016767 Carpinus fangiana HOM05D004475 ORTHO05D005235 1.4e-09 66.6 118 44.1
AT3G57280 Arabidopsis thaliana HOM05D004475 ORTHO05D005235 1.9e-09 66.2 115 40.0
ClCG04G003840 Citrullus lanatus HOM05D004475 ORTHO05D005235 2.4e-09 65.9 122 42.6
THA.LOC104824427 Tarenaya hassleriana HOM05D004475 ORTHO05D005235 2.4e-09 65.9 116 39.7
BolC8t50880H Brassica oleracea HOM05D004475 ORTHO05D005235 3.2e-09 65.5 117 39.3
BolC6t37586H Brassica oleracea HOM05D004475 ORTHO05D005235 4.2e-09 65.1 120 42.5
BcaC08g44832 Brassica carinata HOM05D004475 ORTHO05D005235 5.5e-09 64.7 118 41.5
Duzib128G1477 Durio zibethinus HOM05D004475 ORTHO05D005235 5.5e-09 64.7 109 40.4
Nitab4.5_0010656g0010 Nicotiana tabacum HOM05D004475 ORTHO05D005235 5.5e-09 64.7 107 40.2
CAN.G641.30 Capsicum annuum HOM05D004475 ORTHO05D005235 7.1e-09 64.3 115 44.3
Duzib093G1491 Durio zibethinus HOM05D004475 ORTHO05D005235 1.6e-08 63.2 117 37.6
CiPaw.10G036200 Carya illinoinensis HOM05D004475 ORTHO05D005235 2.1e-08 62.8 116 42.2
Sed0018828 Sechium edule HOM05D004475 ORTHO05D005235 2.1e-08 62.8 121 40.5
Sc19g0008500 Simmondsia chinensis HOM05D042330 ORTHO05D037608 3.5e-08 62.0 117 38.5
PGSC0003DMG400008171 Solanum tuberosum HOM05D004475 ORTHO05D005235 3.5e-08 62.0 78 50.0
AL5G38770 Arabidopsis lyrata HOM05D004475 ORTHO05D005235 4.6e-08 61.6 115 38.3
Haze_19778 Corylus avellana HOM05D004475 ORTHO05D005235 4.6e-08 61.6 119 44.5
PGR004G0119 Punica granatum HOM05D004475 ORTHO05D005235 6.0e-08 61.2 111 38.7
C06p24380 Brassica napus HOM05D004475 ORTHO05D005235 1.3e-07 60.1 121 42.1
TWI74G0419 Tripterygium wilfordii HOM05D004475 ORTHO05D005235 1.3e-07 60.1 119 39.5
Solyc10g079260.2 Solanum lycopersicum HOM05D004475 ORTHO05D005235 1.8e-07 59.7 111 39.6
ECA247G2236 Erigeron canadensis HOM05D004475 ORTHO05D005235 3.9e-07 58.5 113 30.1
ATR0749G001 Amborella trichopoda HOM05D004475 ORTHO05D005235 6.7e-07 57.8 107 36.4
Manes.09G010600 Manihot esculenta HOM05D004475 ORTHO05D005235 6.7e-07 57.8 112 40.2
CSS0043412 Camellia sinensis var. sinensis HOM05D004475 ORTHO05D005235 8.7e-07 57.4 107 38.3
Lsat_1_v5_gn_5_161180 Lactuca sativa HOM05D004475 ORTHO05D005235 8.7e-07 57.4 106 34.9
CARHR167480 Cardamine hirsuta HOM05D004475 ORTHO05D005235 1.1e-06 57.0 117 35.0
A07p23330 Brassica napus HOM05D004475 ORTHO05D005235 1.5e-06 56.6 116 37.9
CANSAT80G2630 Cannabis sativa HOM05D004475 ORTHO05D005235 2.5e-06 55.8 112 37.5
TWI77G0736 Tripterygium wilfordii HOM05D004475 ORTHO05D005235 2.5e-06 55.8 116 38.8
MSTRG.6404 Avicennia marina HOM05D004475 ORTHO05D005235 3.3e-06 55.5 109 38.5
Carub.0005s2413 Capsella rubella HOM05D004475 ORTHO05D005235 3.3e-06 55.5 113 38.9
SalBow6G6503 Salvia bowleyana HOM05D004475 ORTHO05D005235 3.3e-06 55.5 112 40.2
Actinidia17673 Actinidia chinensis HOM05D004475 ORTHO05D005235 4.3e-06 55.1 54 53.7
Lj2A388T27 Lonicera japonica HOM05D004475 ORTHO05D005235 4.3e-06 55.1 118 36.4
SalBow1G0186 Salvia bowleyana HOM05D004475 ORTHO05D005235 5.6e-06 54.7 112 41.1
Aqoxy5G02252 Aquilegia oxysepala HOM05D004475 ORTHO05D005235 7.4e-06 54.3 122 32.0
Cc06_g18210 Coffea canephora HOM05D004475 ORTHO05D005235 7.4e-06 54.3 88 40.9


User provided reference genes

Program Settings