Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_22922_v3 Cicer arietinum L. HOM05D000176 ORTHO05D002183 1.8e-90 335.9 169 100.0
Ca_02570_v3 Cicer arietinum L. HOM05D001569 ORTHO05D002183 3.1e-74 282.0 223 70.4
Ca_04892_v3 Cicer arietinum L. HOM05D000176 ORTHO05D002183 4.1e-74 281.6 188 77.7
Ca_03682_v3 Cicer arietinum L. HOM05D000176 ORTHO05D000106 5.9e-57 224.6 220 60.5
Ca_25437_v3 Cicer arietinum L. HOM05D000176 ORTHO05D002183 8.5e-56 220.7 188 66.5
Ca_02919_v3 Cicer arietinum L. HOM05D000176 ORTHO05D000106 1.4e-50 203.4 314 43.9
Ca_26998_v3 Cicer arietinum L. HOM05D000176 ORTHO05D000106 7.2e-47 191.0 146 65.8
Ca_07316_v3 Cicer arietinum L. HOM05D000176 ORTHO05D002183 5.2e-45 184.9 157 61.8
Ca_04467_v3 Cicer arietinum L. HOM05D000176 ORTHO05D000106 4.4e-44 181.8 344 40.1
Ca_11825_v3 Cicer arietinum L. HOM05D000176 ORTHO05D002183 7.7e-41 171.0 124 67.7
Ca_07399_v3 Cicer arietinum L. HOM05D000176 ORTHO05D000106 1.7e-40 169.9 193 50.8
Ca_03376_v3 Cicer arietinum L. HOM05D003499 ORTHO05D004754 1.9e-39 166.4 126 71.4
Ca_07562_v3 Cicer arietinum L. HOM05D003576 ORTHO05D004124 5.5e-39 164.9 234 46.6
Ca_27088_v3 Cicer arietinum L. HOM05D000176 ORTHO05D002183 2.0e-36 156.4 118 69.5
Ca_02693_v3 Cicer arietinum L. HOM05D000176 ORTHO05D002183 1.2e-33 147.1 141 56.0
Ca_04644_v3 Cicer arietinum L. HOM05D037528 ORTHO05D002183 7.8e-33 144.4 96 78.1
Ca_07725_v3 Cicer arietinum L. HOM05D000176 ORTHO05D002183 7.8e-33 144.4 126 61.1
Ca_19794_v3 Cicer arietinum L. HOM05D000176 ORTHO05D000106 2.9e-32 142.5 117 66.7
Ca_02429_v3 Cicer arietinum L. HOM05D000161 ORTHO05D000111 1.0e-29 134.0 115 61.7
Ca_03378_v3 Cicer arietinum L. HOM05D000176 ORTHO05D002183 1.4e-29 133.7 109 61.5
Ca_04411_v3 Cicer arietinum L. HOM05D000176 ORTHO05D002183 1.4e-29 133.7 150 54.0
Ca_30631_v3 Cicer arietinum L. HOM05D000176 ORTHO05D002183 1.4e-29 133.7 109 61.5
Ca_08875_v3 Cicer arietinum L. HOM05D000176 ORTHO05D000106 8.9e-29 131.0 188 46.8
Ca_02438_v3 Cicer arietinum L. HOM05D000176 ORTHO05D002183 2.0e-28 129.8 119 57.1
Ca_24132_v3 Cicer arietinum L. HOM05D000176 ORTHO05D002183 2.0e-28 129.8 196 43.4
Ca_03222_v3 Cicer arietinum L. HOM05D000176 ORTHO05D002183 2.9e-27 125.9 126 53.2
Ca_11515_v3 Cicer arietinum L. HOM05D000176 ORTHO05D002183 8.3e-27 124.4 98 65.3
Ca_20886_v3 Cicer arietinum L. HOM05D000176 ORTHO05D000106 8.3e-27 124.4 117 58.1
Ca_12141_v3 Cicer arietinum L. HOM05D000176 ORTHO05D002183 5.4e-26 121.7 98 65.3
Ca_12644_v3 Cicer arietinum L. HOM05D000176 ORTHO05D002183 5.4e-26 121.7 68 83.8
Ca_25773_v3 Cicer arietinum L. HOM05D000176 ORTHO05D000106 5.4e-26 121.7 98 67.3
Ca_12413_v3 Cicer arietinum L. HOM05D000176 ORTHO05D000106 1.6e-25 120.2 104 61.5
Ca_02430_v3 Cicer arietinum L. HOM05D000176 ORTHO05D002183 4.6e-25 118.6 119 57.1
Ca_02615_v3 Cicer arietinum L. HOM05D004283 ORTHO05D002183 6.0e-25 118.2 165 49.1
Ca_11342_v3 Cicer arietinum L. HOM05D000176 ORTHO05D002183 2.5e-23 112.8 124 53.2
Ca_30326_v3 Cicer arietinum L. HOM05D000176 ORTHO05D002183 2.5e-23 112.8 124 53.2
Ca_02119_v3 Cicer arietinum L. HOM05D000176 ORTHO05D002183 2.8e-22 109.4 90 62.2
Ca_02442_v3 Cicer arietinum L. HOM05D000176 ORTHO05D000106 1.8e-21 106.7 54 92.6
Ca_26486_v3 Cicer arietinum L. HOM05D000176 ORTHO05D002183 2.3e-21 106.3 103 57.3
Ca_05087_v3 Cicer arietinum L. HOM05D000176 ORTHO05D002183 5.2e-21 105.1 124 48.4
Ca_02917_v3 Cicer arietinum L. HOM05D000176 ORTHO05D002183 8.9e-21 104.4 166 42.2
Ca_23078_v3 Cicer arietinum L. HOM05D000176 ORTHO05D002183 1.4e-18 97.1 54 85.2
Ca_27596_v3 Cicer arietinum L. HOM05D000176 ORTHO05D000106 7.0e-18 94.7 54 83.3
Ca_27680_v3 Cicer arietinum L. HOM05D000176 ORTHO05D002183 1.7e-16 90.1 114 48.2
Ca_12206_v3 Cicer arietinum L. HOM05D000176 ORTHO05D002183 8.6e-16 87.8 166 39.2
Ca_30374_v3 Cicer arietinum L. HOM05D000176 ORTHO05D002183 1.9e-15 86.7 62 67.7
Ca_07335_v3 Cicer arietinum L. HOM05D000176 ORTHO05D002183 2.5e-15 86.3 70 65.7
Ca_13827_v3 Cicer arietinum L. HOM05D000176 ORTHO05D002183 3.4e-12 75.9 171 35.1
Ca_07393_v3 Cicer arietinum L. HOM05D000176 ORTHO05D002183 5.8e-12 75.1 42 76.2
Ca_02602_v3 Cicer arietinum L. HOM05D002644 ORTHO05D003267 7.5e-12 74.7 40 82.5
Ca_07466_v3 Cicer arietinum L. HOM05D037528 ORTHO05D002183 1.7e-11 73.6 66 63.6
VMungo0647G2344 Vigna mungo HOM05D000176 ORTHO05D000106 1.7e-11 73.6 116 33.6
Ca_03817_v3 Cicer arietinum L. HOM05D000176 ORTHO05D002183 8.3e-11 71.2 147 37.4
FvH4_6g36961 Fragaria vesca HOM05D000176 ORTHO05D000106 1.2e-09 67.4 120 35.8
RcHm_v2.0_Chr1g0332031 Rosa chinensis HOM05D000176 ORTHO05D000106 1.6e-09 67.0 120 35.8
Lj9C207T4 Lonicera japonica HOM05D000176 ORTHO05D000106 2.1e-09 66.6 103 37.9
Sed0026480 Sechium edule HOM05D000176 ORTHO05D000106 3.5e-09 65.9 121 35.5
MELO3C002881.2 Cucumis melo HOM05D000176 ORTHO05D000106 4.6e-09 65.5 121 35.5
CsaV3_5G025870 Cucumis sativus L. HOM05D000176 ORTHO05D000106 4.6e-09 65.5 121 35.5
MD17G1028300 Malus domestica HOM05D000176 ORTHO05D000106 6.0e-09 65.1 120 33.3
ClCG09G020530 Citrullus lanatus HOM05D000176 ORTHO05D000106 1.0e-08 64.3 125 36.0
arahy.Tifrunner.gnm1.ann1.PINR01 Arachis hypogaea HOM05D000176 ORTHO05D000106 1.7e-08 63.5 121 32.2
CSS0043138 Camellia sinensis var. sinensis HOM05D000176 ORTHO05D000106 3.0e-08 62.8 102 36.3
arahy.Tifrunner.gnm1.ann1.6TXF5J Arachis hypogaea HOM05D000176 ORTHO05D000106 5.1e-08 62.0 121 32.2
MD17G1142200 Malus domestica HOM05D000176 ORTHO05D000106 5.1e-08 62.0 133 32.3
CSS0001494 Camellia sinensis var. sinensis HOM05D000176 ORTHO05D000106 6.6e-08 61.6 109 34.9
Lj5C479G2 Lonicera japonica HOM05D000176 ORTHO05D000106 6.6e-08 61.6 120 33.3
RcHm_v2.0_Chr5g0043391 Rosa chinensis HOM05D000176 ORTHO05D000106 8.6e-08 61.2 106 36.8
Lalb_Chr20g0114151 Lupinus albus HOM05D000176 ORTHO05D000106 1.1e-07 60.8 134 32.8
CARHR018550 Cardamine hirsuta HOM05D000176 ORTHO05D000106 1.5e-07 60.5 128 31.2
Ca_03112_v3 Cicer arietinum L. HOM05D000176 ORTHO05D002183 1.5e-07 60.5 65 53.8
Ca_14143_v3 Cicer arietinum L. HOM05D000176 ORTHO05D002183 1.5e-07 60.5 105 34.3
Lj8C619G11 Lonicera japonica HOM05D000176 ORTHO05D000106 1.5e-07 60.5 120 35.0
QL08p043592 Quercus lobata HOM05D000176 ORTHO05D000106 1.5e-07 60.5 134 32.8
CANSAT56G1843 Cannabis sativa HOM05D000176 ORTHO05D000106 1.9e-07 60.1 121 30.6
Sabra01G0157300 Salix brachista HOM05D000176 ORTHO05D000106 1.9e-07 60.1 122 32.8
Lj1C99T4 Lonicera japonica HOM05D000176 ORTHO05D000106 2.5e-07 59.7 114 34.2
MD09G1156100 Malus domestica HOM05D000176 ORTHO05D000106 2.5e-07 59.7 134 32.1
RcHm_v2.0_Chr2g0150841 Rosa chinensis HOM05D000176 ORTHO05D000106 2.5e-07 59.7 133 33.1
Ah.16g107440 Amaranthus hybridus HOM05D000176 ORTHO05D000106 3.3e-07 59.3 133 32.3
AL1G30280 Arabidopsis lyrata HOM05D000176 ORTHO05D000106 3.3e-07 59.3 128 30.5
AT1G17930 Arabidopsis thaliana HOM05D000176 ORTHO05D000106 3.3e-07 59.3 128 30.5
EL10As19g24186 Beta vulgaris HOM05D000176 ORTHO05D000106 3.3e-07 59.3 133 31.6
CSS0002983 Camellia sinensis var. sinensis HOM05D000176 ORTHO05D000106 3.3e-07 59.3 117 32.5
Ca_10886_v3 Cicer arietinum L. HOM05D000176 ORTHO05D000106 3.3e-07 59.3 101 33.7
Ciclev10025397m.g Citrus clementina HOM05D000176 ORTHO05D000106 4.3e-07 58.9 113 33.6
Sp4g03990 Schrenkiella parvula HOM05D000176 ORTHO05D000106 4.3e-07 58.9 131 35.1
THA.LOC104823099 Tarenaya hassleriana HOM05D000176 ORTHO05D000106 4.3e-07 58.9 130 33.8
Ca_23731_v3 Cicer arietinum L. HOM05D000176 ORTHO05D002183 5.6e-07 58.5 105 33.3
FvH4_6g37771 Fragaria vesca HOM05D000176 ORTHO05D000106 5.6e-07 58.5 133 33.1
Prupe.3G047800 Prunus persica HOM05D000176 ORTHO05D000106 5.6e-07 58.5 136 32.4
VMungo1309G0077 Vigna mungo HOM05D000176 ORTHO05D000106 5.6e-07 58.5 156 28.2
A06p13970 Brassica napus HOM05D000176 ORTHO05D000106 7.3e-07 58.2 128 30.5
BraA06t24537Z Brassica rapa HOM05D000176 ORTHO05D000106 7.3e-07 58.2 128 30.5
CSS0031463 Camellia sinensis var. sinensis HOM05D000176 ORTHO05D000106 7.3e-07 58.2 74 43.2
Sp1g16000 Schrenkiella parvula HOM05D000176 ORTHO05D000106 7.3e-07 58.2 105 35.2
THA.LOC104799018 Tarenaya hassleriana HOM05D000176 ORTHO05D000106 7.3e-07 58.2 128 32.0
AUR62038386 Chenopodium quinoa HOM05D000176 ORTHO05D000106 9.5e-07 57.8 133 31.6
AUR62038389 Chenopodium quinoa HOM05D000176 ORTHO05D000106 9.5e-07 57.8 133 31.6
Ca_14624_v3 Cicer arietinum L. HOM05D000176 ORTHO05D000106 9.5e-07 57.8 134 32.1
Ca_20173_v3 Cicer arietinum L. HOM05D000176 ORTHO05D000106 9.5e-07 57.8 99 33.3
Hma1.2p1_0111F.1_g053640 Hydrangea macrophylla HOM05D000176 ORTHO05D000106 9.5e-07 57.8 140 30.0
MD17G1142300 Malus domestica HOM05D000176 ORTHO05D000106 9.5e-07 57.8 134 31.3
Prupe.3G169000 Prunus persica HOM05D000176 ORTHO05D000106 9.5e-07 57.8 134 31.3
Sed0012746 Sechium edule HOM05D000176 ORTHO05D000106 9.5e-07 57.8 134 32.1
VMungo0540G2186 Vigna mungo HOM05D000176 ORTHO05D000106 9.5e-07 57.8 134 32.1
GSVIVG01017117001 Vitis vinifera HOM05D000176 ORTHO05D003511 9.5e-07 57.8 123 34.1
arahy.Tifrunner.gnm1.ann1.B0WW5W Arachis hypogaea HOM05D000176 ORTHO05D000106 1.2e-06 57.4 134 31.3
arahy.Tifrunner.gnm1.ann1.ZG7XLL Arachis hypogaea HOM05D000176 ORTHO05D000106 1.2e-06 57.4 134 31.3
EL10Ac2g02712 Beta vulgaris HOM05D000176 ORTHO05D000106 1.2e-06 57.4 118 34.7
Ca_26166_v3 Cicer arietinum L. HOM05D000176 ORTHO05D002183 1.2e-06 57.4 101 33.7
Thhalv10000135m.g Eutrema salsugineum HOM05D000176 ORTHO05D000106 1.2e-06 57.4 130 34.6
Lj8C418G4 Lonicera japonica HOM05D000176 ORTHO05D000106 1.2e-06 57.4 99 35.4
Lalb_Chr15g0080531 Lupinus albus HOM05D000176 ORTHO05D000106 1.2e-06 57.4 134 31.3
PGR042G1331 Punica granatum HOM05D000176 ORTHO05D000106 1.2e-06 57.4 135 32.6
AL4G16100 Arabidopsis lyrata HOM05D000176 ORTHO05D000106 1.6e-06 57.0 130 34.6
AT2G25010 Arabidopsis thaliana HOM05D000176 ORTHO05D000106 1.6e-06 57.0 130 34.6
BcaB06g28031 Brassica carinata HOM05D000176 ORTHO05D000106 1.6e-06 57.0 130 34.6
BcaC02g08378 Brassica carinata HOM05D000176 ORTHO05D000106 1.6e-06 57.0 130 34.6
A04p19430 Brassica napus HOM05D000176 ORTHO05D000106 1.6e-06 57.0 130 34.6
C04p55010 Brassica napus HOM05D000176 ORTHO05D000106 1.6e-06 57.0 130 34.6
C05p16290 Brassica napus HOM05D000176 ORTHO05D000106 1.6e-06 57.0 128 29.7
BolC5t30331H Brassica oleracea HOM05D000176 ORTHO05D000106 1.6e-06 57.0 128 29.7
CSS0039650 Camellia sinensis var. sinensis HOM05D000176 ORTHO05D000106 1.6e-06 57.0 104 35.6
AUR62022514 Chenopodium quinoa HOM05D000176 ORTHO05D000106 1.6e-06 57.0 133 31.6
Ca_23329_v3 Cicer arietinum L. HOM05D000176 ORTHO05D000106 1.6e-06 57.0 121 33.1
Ca_13090_v3 Cicer arietinum L. HOM05D000176 ORTHO05D002183 2.1e-06 56.6 147 28.6
Lj2C466G13 Lonicera japonica HOM05D000176 ORTHO05D000106 2.1e-06 56.6 128 31.2
Lj6g0005713 Lotus japonicus HOM05D000176 ORTHO05D000106 2.1e-06 56.6 134 30.6
RcHm_v2.0_Chr5g0052481 Rosa chinensis HOM05D000176 ORTHO05D000106 2.1e-06 56.6 134 30.6
ATR0796G078 Amborella trichopoda HOM05D007095 ORTHO05D008898 2.8e-06 56.2 113 30.1
Duzib211G0089 Durio zibethinus HOM05D000176 ORTHO05D000106 2.8e-06 56.2 134 30.6
Eucgr.A01958 Eucalyptus grandis HOM05D000176 ORTHO05D000106 2.8e-06 56.2 136 33.8
Lj2C1004G7 Lonicera japonica HOM05D000176 ORTHO05D000106 2.8e-06 56.2 93 35.5
MD09G1191600 Malus domestica HOM05D000176 ORTHO05D000106 2.8e-06 56.2 136 31.6
Prupe.4G252400 Prunus persica HOM05D000176 ORTHO05D000106 2.8e-06 56.2 134 31.3
RcHm_v2.0_Chr2g0143601 Rosa chinensis HOM05D000176 ORTHO05D000106 2.8e-06 56.2 133 30.8
Atru.chr6.3553_Atru.chr6.3554 Acer truncatum HOM05D000176 ORTHO05D000106 3.6e-06 55.8 134 32.1
Aa31LG11G4340 Aethionema arabicum HOM05D000176 ORTHO05D000106 3.6e-06 55.8 105 34.3
AT2G04865 Arabidopsis thaliana HOM05D000176 ORTHO05D000106 3.6e-06 55.8 122 32.0
FvH4_3g28611 Fragaria vesca HOM05D000176 ORTHO05D000106 3.6e-06 55.8 134 30.6
Lju41C46T7 Lonicera japonica HOM05D000176 ORTHO05D000106 3.6e-06 55.8 148 28.4
THA.LOC104808853 Tarenaya hassleriana HOM05D000176 ORTHO05D000106 3.6e-06 55.8 122 32.8
Aa31sc83G70 Aethionema arabicum HOM05D000176 ORTHO05D000106 4.7e-06 55.5 114 36.0
A03p44500 Brassica napus HOM05D000176 ORTHO05D000106 4.7e-06 55.5 122 32.0
C03p55310 Brassica napus HOM05D000176 ORTHO05D000106 4.7e-06 55.5 122 32.0
BolC3t17803H Brassica oleracea HOM05D000176 ORTHO05D000106 4.7e-06 55.5 122 32.0
BraA03t13583Z Brassica rapa HOM05D000176 ORTHO05D000106 4.7e-06 55.5 122 32.0
Thhalv10007522m.g Eutrema salsugineum HOM05D000176 ORTHO05D000106 4.7e-06 55.5 105 31.4
ATR0044G038 Amborella trichopoda HOM05D007095 ORTHO05D008898 6.2e-06 55.1 127 29.1
CSS0002500 Camellia sinensis var. sinensis HOM05D000176 ORTHO05D000106 6.2e-06 55.1 121 32.2
CSS0014815 Camellia sinensis var. sinensis HOM05D000176 ORTHO05D000106 6.2e-06 55.1 121 32.2
Ca_12453_v3 Cicer arietinum L. HOM05D000176 ORTHO05D002183 6.2e-06 55.1 28 89.3
Cc03_g14530 Coffea canephora HOM05D000176 ORTHO05D000106 6.2e-06 55.1 121 33.1
Duzib138G0102 Durio zibethinus HOM05D000176 ORTHO05D000106 6.2e-06 55.1 134 30.6
FvH4_6g33711 Fragaria vesca HOM05D000176 ORTHO05D000106 6.2e-06 55.1 133 30.8
Actinidia11188 Actinidia chinensis HOM05D000176 ORTHO05D000106 8.1e-06 54.7 133 31.6
AL3G42490 Arabidopsis lyrata HOM05D000176 ORTHO05D000106 8.1e-06 54.7 122 32.0
BcaB07g34015 Brassica carinata HOM05D000176 ORTHO05D000106 8.1e-06 54.7 118 30.5
Migut.C00132 Erythranthe guttata HOM05D000176 ORTHO05D000106 8.1e-06 54.7 119 31.9
Gorai.001G193000 Gossypium raimondii HOM05D000176 ORTHO05D000106 8.1e-06 54.7 134 30.6


User provided reference genes

Program Settings