Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_22870_v3 Cicer arietinum L. HOM05D004085 ORTHO05D005189 7.3e-214 746.9 362 100.0
Medtr8g066120 Medicago truncatula HOM05D004085 ORTHO05D005189 4.1e-180 634.8 316 95.9
Psat4g122760 Pisum sativum HOM05D004085 ORTHO05D005189 1.1e-177 626.7 342 89.8
Psat4g118760 Pisum sativum HOM05D004085 ORTHO05D005189 6.1e-176 620.9 317 93.7
Phvul.003G280600 Phaseolus vulgaris HOM05D004085 ORTHO05D005189 4.1e-172 608.2 354 83.1
Glyma.05G183800 Glycine max HOM05D004085 ORTHO05D005189 2.9e-170 602.1 335 86.9
arahy.Tifrunner.gnm1.ann1.34XV9Z Arachis hypogaea HOM05D004085 ORTHO05D005189 4.4e-166 588.2 319 88.4
Lj4g0023791 Lotus japonicus HOM05D004085 ORTHO05D005189 2.2e-165 585.9 323 87.0
Lalb_Chr20g0117031 Lupinus albus HOM05D004085 ORTHO05D005189 1.8e-164 582.8 315 87.0
VMungo0251G3520 Vigna mungo HOM05D004085 ORTHO05D005189 2.4e-164 582.4 341 83.0
Lalb_Chr15g0084991 Lupinus albus HOM05D004085 ORTHO05D005189 5.7e-158 561.2 317 84.2
CANSAT64G3016 Cannabis sativa HOM05D004085 ORTHO05D005189 5.5e-153 544.7 319 81.5
CiPaw.05G122000 Carya illinoinensis HOM05D004085 ORTHO05D005189 8.8e-151 537.3 318 79.6
Ciclev10032152m.g Citrus clementina HOM05D004085 ORTHO05D005189 3.7e-149 531.9 318 79.2
Manes.05G115200 Manihot esculenta HOM05D004085 ORTHO05D005189 5.9e-147 524.6 320 78.4
Duzib251G0046 Durio zibethinus HOM05D004085 ORTHO05D005189 2.9e-146 522.3 319 78.1
TWI75G0426 Tripterygium wilfordii HOM05D004085 ORTHO05D005189 5.5e-145 518.1 320 77.2
CsaV3_6G033900 Cucumis sativus L. HOM05D004085 ORTHO05D005189 9.4e-145 517.3 321 76.3
Atru.chr11.1559 Acer truncatum HOM05D004085 ORTHO05D005189 1.2e-144 516.9 318 77.4
Dinv34021 Davidia involucrata HOM05D004085 ORTHO05D005189 4.7e-144 515.0 320 76.6
Prupe.1G293400 Prunus persica HOM05D004085 ORTHO05D005189 8.0e-144 514.2 369 70.5
ClCG08G010600 Citrullus lanatus HOM05D004085 ORTHO05D005189 1.8e-143 513.1 321 76.0
Cfa008850 Carpinus fangiana HOM05D004085 ORTHO05D005189 3.0e-143 512.3 305 78.7
Haze_11859 Corylus avellana HOM05D004085 ORTHO05D005189 6.8e-143 511.1 373 67.3
MD13G1056600 Malus domestica HOM05D004085 ORTHO05D005189 1.5e-142 510.0 325 76.3
MELO3C011402.2 Cucumis melo HOM05D004085 ORTHO05D005189 3.4e-142 508.8 321 75.7
MD16G1055900 Malus domestica HOM05D004085 ORTHO05D005189 5.7e-142 508.1 349 71.6
Cpa.g.sc1.168 Carica papaya HOM05D004085 ORTHO05D005189 7.5e-142 507.7 315 74.6
Thecc.02G322800 Theobroma cacao HOM05D004085 ORTHO05D005189 1.7e-141 506.5 318 76.1
BcaC06g31165 Brassica carinata HOM05D004085 ORTHO05D005189 2.2e-141 506.1 318 76.1
THA.LOC104805212 Tarenaya hassleriana HOM05D004085 ORTHO05D005189 3.7e-141 505.4 321 76.6
Nn4g23533 Nelumbo nucifera HOM05D004085 ORTHO05D005189 4.8e-141 505.0 318 74.2
Sp2g14620 Schrenkiella parvula HOM05D004085 ORTHO05D005189 4.8e-141 505.0 318 75.5
Thhalv10004640m.g Eutrema salsugineum HOM05D004085 ORTHO05D005189 6.3e-141 504.6 314 76.8
Gohir.A03G106500 Gossypium hirsutum HOM05D004085 ORTHO05D005189 6.3e-141 504.6 321 74.5
Gorai.005G147600 Gossypium raimondii HOM05D004085 ORTHO05D005189 6.3e-141 504.6 322 74.5
Gohir.D02G131700 Gossypium hirsutum HOM05D004085 ORTHO05D005189 3.1e-140 502.3 321 74.5
Aqoxy3G03746 Aquilegia oxysepala HOM05D004085 ORTHO05D005189 1.2e-139 500.4 318 74.2
Carub.0005s0294 Capsella rubella HOM05D004085 ORTHO05D005189 1.2e-139 500.4 317 75.4
Nitab4.5_0002863g0020 Nicotiana tabacum HOM05D004085 ORTHO05D005189 1.6e-139 500.0 319 73.0
Aa31LG2G6920 Aethionema arabicum HOM05D004085 ORTHO05D005189 4.5e-139 498.4 335 71.3
BcaC06g31143 Brassica carinata HOM05D004085 ORTHO05D005189 4.5e-139 498.4 315 76.2
AL5G13590 Arabidopsis lyrata HOM05D004085 ORTHO05D005189 5.9e-139 498.0 318 75.5
BraA06t27197Z Brassica rapa HOM05D004085 ORTHO05D005189 7.7e-139 497.7 319 75.2
A06p42850 Brassica napus HOM05D004085 ORTHO05D005189 1.0e-138 497.3 315 76.2
CSS0028863 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 1.3e-138 496.9 317 74.4
Dinv07974 Davidia involucrata HOM05D004085 ORTHO05D005189 1.3e-138 496.9 322 74.8
PSO409G0049 Papaver somniferum HOM05D004085 ORTHO05D005189 1.3e-138 496.9 319 74.6
TAR629G1999 Trochodendron aralioides HOM05D004085 ORTHO05D005189 1.3e-138 496.9 318 73.9
BcaC03g17242 Brassica carinata HOM05D004085 ORTHO05D005189 1.7e-138 496.5 320 73.4
C07p34240 Brassica napus HOM05D004085 ORTHO05D005189 1.7e-138 496.5 351 69.8
BolC7t43952H Brassica oleracea HOM05D004085 ORTHO05D005189 1.7e-138 496.5 351 69.8
Migut.D01616 Erythranthe guttata HOM05D004085 ORTHO05D005189 1.7e-138 496.5 318 73.0
PSO063G3410 Papaver somniferum HOM05D004085 ORTHO05D005189 2.2e-138 496.1 319 74.6
Sed0007813 Sechium edule HOM05D004085 ORTHO05D005189 2.2e-138 496.1 324 74.7
BolC2t11263H Brassica oleracea HOM05D004085 ORTHO05D005189 5.0e-138 495.0 320 73.1
Rhsim09G0122200 Rhododendron simsii HOM05D004085 ORTHO05D005189 5.0e-138 495.0 321 73.5
CARHR146210 Cardamine hirsuta HOM05D004085 ORTHO05D005189 1.1e-137 493.8 314 73.9
PGR102G0161 Punica granatum HOM05D004085 ORTHO05D005189 1.1e-137 493.8 319 73.4
DCAR_011575 Daucus carota HOM05D004085 ORTHO05D005189 1.5e-137 493.4 335 70.1
RcHm_v2.0_Chr4g0437351 Rosa chinensis HOM05D004085 ORTHO05D005189 2.5e-137 492.7 321 74.5
Sc14g0007770 Simmondsia chinensis HOM05D004085 ORTHO05D005189 3.2e-137 492.3 320 73.8
Actinidia07768 Actinidia chinensis HOM05D004085 ORTHO05D005189 5.5e-137 491.5 323 73.7
BcaB07g30279 Brassica carinata HOM05D004085 ORTHO05D005189 7.2e-137 491.1 314 74.5
A02p33630 Brassica napus HOM05D004085 ORTHO05D005189 7.2e-137 491.1 320 72.8
CAN.G587.59 Capsicum annuum HOM05D004085 ORTHO05D005189 7.2e-137 491.1 319 72.1
C02p51780 Brassica napus HOM05D004085 ORTHO05D005189 1.2e-136 490.3 320 72.5
PGSC0003DMG402004079 Solanum tuberosum HOM05D004085 ORTHO05D005189 2.1e-136 489.6 317 72.6
Eucgr.J01102 Eucalyptus grandis HOM05D004085 ORTHO05D005189 2.8e-136 489.2 318 73.3
vmacro10475 Vaccinium macrocarpon HOM05D004085 ORTHO05D005189 2.8e-136 489.2 318 73.3
AL3G42500 Arabidopsis lyrata HOM05D004085 ORTHO05D005189 4.7e-136 488.4 346 70.5
DCAR_007209 Daucus carota HOM05D004085 ORTHO05D005189 6.1e-136 488.0 318 72.0
Solyc06g069390.4 Solanum lycopersicum HOM05D004085 ORTHO05D005189 1.0e-135 487.3 317 72.2
Sopen06g026660 Solanum pennellii HOM05D004085 ORTHO05D005189 1.0e-135 487.3 317 71.9
AT2G03800 Arabidopsis thaliana HOM05D004085 ORTHO05D005189 1.4e-135 486.9 351 68.1
GSVIVG01008152001 Vitis vinifera HOM05D004085 ORTHO05D005189 1.8e-135 486.5 320 71.2
HanXRQChr05g0157451 Helianthus annuus HOM05D004085 ORTHO05D005189 3.0e-135 485.7 314 72.9
PGSC0003DMG400001937 Solanum tuberosum HOM05D004085 ORTHO05D005189 3.0e-135 485.7 318 72.3
Hma1.2p1_0428F.1_g150850 Hydrangea macrophylla HOM05D004085 ORTHO05D005189 5.2e-135 485.0 321 72.0
Cc11_g11560 Coffea canephora HOM05D004085 ORTHO05D005189 8.8e-135 484.2 322 71.7
Nitab4.5_0001071g0010 Nicotiana tabacum HOM05D004085 ORTHO05D005189 8.8e-135 484.2 318 71.7
Peaxi162Scf00873g00113 Petunia axillaris HOM05D004085 ORTHO05D005189 1.2e-134 483.8 322 70.5
HanXRQChr12g0365061 Helianthus annuus HOM05D004085 ORTHO05D005189 2.0e-134 483.0 320 71.2
Nitab4.5_0000591g0050 Nicotiana tabacum HOM05D004085 ORTHO05D005189 2.0e-134 483.0 315 72.4
Hma1.2p1_0595F.1_g186285 Hydrangea macrophylla HOM05D004085 ORTHO05D005189 3.4e-134 482.3 314 71.7
Sopen04g001280 Solanum pennellii HOM05D004085 ORTHO05D005189 5.7e-134 481.5 318 72.0
Lj3A1027G87 Lonicera japonica HOM05D004085 ORTHO05D005189 7.5e-134 481.1 370 63.5
Gorai.007G040300 Gossypium raimondii HOM05D004085 ORTHO05D005189 1.1e-132 477.2 318 70.1
ECA246G2852 Erigeron canadensis HOM05D004085 ORTHO05D005189 9.2e-132 474.2 314 70.7
Gohir.D11G037500 Gossypium hirsutum HOM05D004085 ORTHO05D005189 1.2e-131 473.8 318 69.8
ECA233G2807 Erigeron canadensis HOM05D004085 ORTHO05D005189 3.5e-131 472.2 320 69.7
MSTRG.779 Avicennia marina HOM05D004085 ORTHO05D005189 4.5e-131 471.9 318 70.4
Duzib248G1362 Durio zibethinus HOM05D004085 ORTHO05D005189 1.0e-130 470.7 319 72.1
Lsat_1_v5_gn_5_23401 Lactuca sativa HOM05D004085 ORTHO05D005189 1.0e-130 470.7 318 69.2
Ah.03g138610 Amaranthus hybridus HOM05D004085 ORTHO05D005189 2.3e-130 469.5 325 69.5
MSTRG.7728 Avicennia marina HOM05D004085 ORTHO05D005189 5.0e-130 468.4 319 70.8
PGR044G1995 Punica granatum HOM05D004085 ORTHO05D005189 1.1e-129 467.2 325 68.0
Sabra15G0078600 Salix brachista HOM05D004085 ORTHO05D005189 1.1e-129 467.2 318 69.8
ATR0691G189 Amborella trichopoda HOM05D004085 ORTHO05D005189 1.9e-129 466.5 320 69.1
Potri.015G048700 Populus trichocarpa HOM05D004085 ORTHO05D005189 1.9e-129 466.5 318 69.8
FAN12G2772 Fragaria x ananassa HOM05D004085 ORTHO05D005189 3.3e-129 465.7 318 72.0
Nitab4.5_0002449g0030 Nicotiana tabacum HOM05D004085 ORTHO05D005189 3.3e-129 465.7 319 69.6
Peaxi162Scf00013g00834 Petunia axillaris HOM05D004085 ORTHO05D005189 4.3e-129 465.3 309 70.9
FAN22G1834 Fragaria x ananassa HOM05D004085 ORTHO05D005189 9.5e-129 464.2 333 69.4
Lsat_1_v5_gn_8_36601 Lactuca sativa HOM05D004085 ORTHO05D005189 1.8e-127 459.9 316 70.3
CSS0006421 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 2.3e-127 459.5 317 69.4
Manes.06G081100 Manihot esculenta HOM05D004085 ORTHO05D005189 2.3e-127 459.5 320 67.2
Hund25155 Selenicereus undatus HOM05D004085 ORTHO05D005189 5.7e-126 454.9 393 59.0
Os08g0339200 Oryza sativa ssp. japonica HOM05D004085 ORTHO05D005189 6.4e-125 451.4 321 67.6
CSS0016924 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 8.3e-125 451.1 317 69.4
Zm00001eb276680 Zea mays HOM05D004085 ORTHO05D005189 8.3e-125 451.1 323 67.2
CDE01G0369 Ceratophyllum demersum HOM05D004085 ORTHO05D005189 2.4e-124 449.5 320 66.9
SalBow2G2246 Salvia bowleyana HOM05D004085 ORTHO05D005189 1.2e-123 447.2 324 65.7
COL.COLO4_27493 Corchorus olitorius HOM05D004085 ORTHO05D005189 8.6e-122 441.0 296 68.6
CSS0030921 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 5.6e-121 438.3 321 67.9
AUR62007873 Chenopodium quinoa HOM05D004085 ORTHO05D005189 9.5e-121 437.6 318 66.0
AUR62003058 Chenopodium quinoa HOM05D004085 ORTHO05D005189 4.7e-120 435.3 318 65.1
FAN07G2517 Fragaria x ananassa HOM05D004085 ORTHO05D005189 6.2e-120 434.9 421 55.6
EL10Ac6g14673 Beta vulgaris HOM05D004085 ORTHO05D005189 1.1e-116 424.1 339 61.9
HPP92_003714 Vanilla planifolia HOM05D004085 ORTHO05D005189 1.3e-114 417.2 296 68.2
Mapoly0007s0171 Marchantia polymorpha HOM05D004085 ORTHO05D005189 8.6e-114 414.5 331 60.1
SGA_v2.0_scaffold36G14490 Striga asiatica HOM05D004085 ORTHO05D005189 1.1e-113 414.1 320 63.8
MBI14_g08107_MAGBIO Magnolia biondii HOM05D004085 ORTHO05D005189 9.5e-113 411.0 273 72.2
Lj5A137T62 Lonicera japonica HOM05D004085 ORTHO05D005189 6.2e-112 408.3 292 68.5
Gohir.A11G034100 Gossypium hirsutum HOM05D004085 ORTHO05D005189 1.1e-111 407.5 318 63.2
Migut.L01162 Erythranthe guttata HOM05D004085 ORTHO05D005189 3.7e-109 399.1 286 66.8
COL.COLO4_27802 Corchorus olitorius HOM05D004085 ORTHO05D005189 6.0e-107 391.7 324 62.3
SHI14335 Sapria himalayana HOM05D004085 ORTHO05D005189 6.0e-107 391.7 335 57.9
Cpa.g.sc3.236 Carica papaya HOM05D004085 ORTHO05D005189 4.7e-104 382.1 341 55.7
Pp3c3_10070 Physcomitrium patens HOM05D004085 ORTHO05D005189 5.2e-103 378.6 318 59.7
Pp3c4_31680 Physcomitrium patens HOM05D004085 ORTHO05D005189 2.6e-102 376.3 320 56.9
AagrBONN_evm.TU.Sc2ySwM_344.2928 Anthoceros agrestis HOM05D004085 ORTHO05D005189 1.7e-101 373.6 318 56.6
SMO146G0350 Selaginella moellendorffii HOM05D004085 ORTHO05D005189 6.4e-101 371.7 324 55.9
Eucgr.K02549 Eucalyptus grandis HOM05D004085 ORTHO05D005189 2.3e-98 363.2 319 55.8
MD16G1055500 Malus domestica HOM05D004085 ORTHO05D005189 6.6e-98 361.7 306 61.1
BraA02t08382Z Brassica rapa HOM05D004085 ORTHO05D005189 1.8e-95 353.6 233 72.5
arahy.Tifrunner.gnm1.ann1.A9XC2E Arachis hypogaea HOM05D004085 ORTHO05D005189 2.0e-94 350.1 208 81.7
Nn3g17533 Nelumbo nucifera HOM05D004085 ORTHO05D005189 3.4e-94 349.4 291 59.1
Oeu045347.1 Olea europaea HOM05D004085 ORTHO05D005189 6.4e-93 345.1 246 67.5
CBR_g34346 Chara braunii HOM05D004085 ORTHO05D005189 8.4e-85 318.2 354 44.6
FvH4_4g29300 Fragaria vesca HOM05D004085 ORTHO05D005189 7.4e-81 305.1 202 73.3
TPR.G27985 Trifolium pratense HOM05D004085 ORTHO05D005189 3.1e-79 299.7 175 85.1
PGSC0003DMG401004079 Solanum tuberosum HOM05D004085 ORTHO05D005189 5.1e-74 282.3 181 75.1
unitig_22.g6891 Utricularia gibba HOM05D004085 ORTHO05D005189 2.1e-72 276.9 220 61.4
C07p34190 Brassica napus HOM05D004085 ORTHO05D005189 2.9e-69 266.5 185 70.8
Os09g0248000 Oryza sativa ssp. japonica HOM05D004085 ORTHO05D005189 4.8e-64 249.2 165 70.3
CSS0002590 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 2.4e-63 246.9 304 48.4
Oeu045348.1 Olea europaea HOM05D004085 ORTHO05D005189 4.3e-57 226.1 145 72.4
Solyc04g005300.4 Solanum lycopersicum HOM05D004085 ORTHO05D005189 4.2e-52 209.5 142 72.5
TPR.G3316 Trifolium pratense HOM05D004085 ORTHO05D026373 1.0e-45 188.3 340 38.2
MBI10_g36395_MAGBIO Magnolia biondii HOM05D004085 ORTHO05D005189 5.0e-45 186.0 148 59.5
Peaxi162Scf00098g00096 Petunia axillaris HOM05D004085 ORTHO05D005189 2.8e-40 170.2 125 64.0
BolC7t43946H Brassica oleracea HOM05D004085 ORTHO05D005189 8.2e-40 168.7 102 75.5
HPP92_003722 Vanilla planifolia HOM05D004085 ORTHO05D005189 1.7e-37 161.0 200 46.0
SEGI_05680 Sequoiadendron giganteum HOM05D004085 ORTHO05D005189 8.8e-34 148.7 109 62.4
TPR.G40588 Trifolium pratense HOM05D004085 ORTHO05D005189 7.5e-33 145.6 69 95.7
BolC7t43934H Brassica oleracea HOM05D004085 ORTHO05D005189 2.0e-30 137.5 105 66.7
MD05G1127700 Malus domestica HOM05D004085 ORTHO05D005189 7.7e-30 135.6 95 68.4
Lj3C737G8 Lonicera japonica HOM05D004085 ORTHO05D005189 6.8e-26 122.5 75 68.0
Duzib068G1264 Durio zibethinus HOM05D004085 ORTHO05D005189 8.3e-24 115.5 67 76.1
Thecc.03G108100 Theobroma cacao HOM05D004085 ORTHO05D026373 1.8e-23 114.4 87 63.2
Lj5A720T31 Lonicera japonica HOM05D004085 ORTHO05D026373 8.6e-21 105.5 165 40.0
Actinidia04797 Actinidia chinensis HOM05D004085 ORTHO05D026373 2.1e-19 100.9 73 65.8
SEGI_34269 Sequoiadendron giganteum HOM05D004085 ORTHO05D005189 6.8e-18 95.9 60 70.0
BcaC06g31148 Brassica carinata HOM05D004085 ORTHO05D005189 3.4e-17 93.6 72 62.5
Ciclev10024148m.g Citrus clementina HOM05D004085 ORTHO05D043374 4.3e-12 76.6 43 79.1
Medtr8g066150 Medicago truncatula HOM05D004085 ORTHO05D263454 2.8e-11 73.9 83 47.0
CANSAT64G2585 Cannabis sativa HOM05D004085 ORTHO05D043374 3.0e-10 70.5 58 58.6
HPP92_003723 Vanilla planifolia HOM05D004085 ORTHO05D005189 3.7e-08 63.5 80 47.5
BolC7t43945H Brassica oleracea HOM05D004085 ORTHO05D005189 1.9e-07 61.2 42 71.4
Eucgr.B03119 Eucalyptus grandis HOM05D004085 ORTHO05D195170 1.6e-06 58.2 56 53.6
arahy.Tifrunner.gnm1.ann1.U3AU98 Arachis hypogaea HOM05D003297 ORTHO05D086085 3.5e-06 57.0 62 48.4


User provided reference genes

Program Settings