Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_22770_v3 Cicer arietinum L. HOM05D005184 ORTHO05D006222 1.3e-102 376.3 186 100.0
Medtr8g063230 Medicago truncatula HOM05D005184 ORTHO05D006222 1.6e-87 326.2 189 87.3
Lalb_Chr11g0071121 Lupinus albus HOM05D005184 ORTHO05D006222 1.3e-86 323.2 187 86.1
Phvul.003G054400 Phaseolus vulgaris HOM05D005184 ORTHO05D006222 8.7e-86 320.5 186 86.0
Glyma.08G290400 Glycine max HOM05D005184 ORTHO05D006222 2.8e-84 315.5 187 84.5
VMungo0251G1371 Vigna mungo HOM05D005184 ORTHO05D006222 8.1e-84 313.9 182 85.2
Glyma.18G133800 Glycine max HOM05D005184 ORTHO05D006222 4.0e-83 311.6 187 83.4
Lj4g0016473 Lotus japonicus HOM05D005184 ORTHO05D006222 2.0e-82 309.3 176 84.7
TPR.G32980 Trifolium pratense HOM05D005184 ORTHO05D006222 4.5e-82 308.1 170 88.8
arahy.Tifrunner.gnm1.ann1.GIV1JF Arachis hypogaea HOM05D005184 ORTHO05D006222 1.2e-79 300.1 191 80.6
Potri.008G146200 Populus trichocarpa HOM05D005184 ORTHO05D006222 6.0e-79 297.7 179 80.4
Manes.01G197300 Manihot esculenta HOM05D005184 ORTHO05D006222 5.1e-78 294.7 178 82.0
Cfa009129 Carpinus fangiana HOM05D005184 ORTHO05D006222 2.8e-76 288.9 175 81.7
CiPaw.05G149300 Carya illinoinensis HOM05D005184 ORTHO05D006222 3.7e-76 288.5 178 81.5
Atru.chr11.1971 Acer truncatum HOM05D005184 ORTHO05D006222 8.2e-76 287.3 178 80.3
Psat4g125480 Pisum sativum HOM05D005184 ORTHO05D006222 1.4e-75 286.6 183 80.3
PGR119G0379 Punica granatum HOM05D005184 ORTHO05D006222 1.4e-75 286.6 180 81.1
Potri.010G095601 Populus trichocarpa HOM05D005184 ORTHO05D006222 3.1e-75 285.4 181 78.5
Ciclev10032867m.g Citrus clementina HOM05D005184 ORTHO05D006222 9.0e-75 283.9 178 78.7
CANSAT01G1514 Cannabis sativa HOM05D005184 ORTHO05D006222 2.0e-74 282.7 176 79.5
FvH4_4g34930 Fragaria vesca HOM05D005184 ORTHO05D006222 2.0e-74 282.7 180 75.6
Nn4g22873 Nelumbo nucifera HOM05D005184 ORTHO05D006222 2.0e-74 282.7 174 79.3
TAR374G1061 Trochodendron aralioides HOM05D005184 ORTHO05D006222 2.0e-74 282.7 176 77.3
Sabra10G0068200 Salix brachista HOM05D005184 ORTHO05D006222 1.3e-73 280.0 181 76.8
HanXRQChr04g0103681 Helianthus annuus HOM05D005184 ORTHO05D006222 2.9e-73 278.9 180 77.8
Lsat_1_v5_gn_4_6340 Lactuca sativa HOM05D005184 ORTHO05D006222 2.9e-73 278.9 177 78.0
CsaV3_5G031800 Cucumis sativus L. HOM05D005184 ORTHO05D006222 1.4e-72 276.6 178 78.7
COL.COLO4_19542 Corchorus olitorius HOM05D005184 ORTHO05D006222 1.9e-72 276.2 169 80.5
Actinidia27771 Actinidia chinensis HOM05D005184 ORTHO05D006222 2.5e-72 275.8 176 77.8
Thecc.02G243600 Theobroma cacao HOM05D005184 ORTHO05D006222 5.5e-72 274.6 169 79.9
arahy.Tifrunner.gnm1.ann1.G4BVC6 Arachis hypogaea HOM05D005184 ORTHO05D006222 7.1e-72 274.2 250 61.6
Aqoxy3G03072 Aquilegia oxysepala HOM05D005184 ORTHO05D006222 2.1e-71 272.7 172 76.2
Cpa.g.sc5.359 Carica papaya HOM05D005184 ORTHO05D006222 4.6e-71 271.6 174 77.0
RcHm_v2.0_Chr5g0030111 Rosa chinensis HOM05D005184 ORTHO05D006222 4.6e-71 271.6 171 76.0
Rhsim12G0048500 Rhododendron simsii HOM05D005184 ORTHO05D006222 1.0e-70 270.4 189 74.6
Duzib268G0446 Durio zibethinus HOM05D005184 ORTHO05D006222 1.8e-70 269.6 171 76.6
Gohir.D01G129700 Gossypium hirsutum HOM05D005184 ORTHO05D006222 1.8e-70 269.6 169 77.5
MELO3C012019.2 Cucumis melo HOM05D005184 ORTHO05D006222 3.9e-70 268.5 160 81.9
Gohir.A01G139200 Gossypium hirsutum HOM05D005184 ORTHO05D006222 6.7e-70 267.7 169 76.9
PSO478G1620 Papaver somniferum HOM05D005184 ORTHO05D006222 2.5e-69 265.8 182 73.6
Medtr8g461280 Medicago truncatula HOM05D005184 ORTHO05D006222 3.3e-69 265.4 165 80.0
MSTRG.614 Avicennia marina HOM05D005184 ORTHO05D006222 5.7e-69 264.6 176 75.0
Migut.E00145 Erythranthe guttata HOM05D005184 ORTHO05D006222 5.7e-69 264.6 175 74.3
Cc11_g14330 Coffea canephora HOM05D005184 ORTHO05D006222 1.3e-68 263.5 189 72.0
MD13G1087800 Malus domestica HOM05D005184 ORTHO05D006222 4.8e-68 261.5 189 69.8
MD16G1088100 Malus domestica HOM05D005184 ORTHO05D006222 4.8e-68 261.5 179 74.3
TWI18G1303 Tripterygium wilfordii HOM05D005184 ORTHO05D006222 6.3e-68 261.2 173 72.8
ECA234G0428 Erigeron canadensis HOM05D005184 ORTHO05D003386 1.1e-67 260.4 168 76.2
PSO017G3562 Papaver somniferum HOM05D005184 ORTHO05D006222 1.4e-67 260.0 173 73.4
Oeu040755.2 Olea europaea HOM05D005184 ORTHO05D006222 5.3e-67 258.1 175 70.9
Oeu039485.1 Olea europaea HOM05D005184 ORTHO05D006222 1.0e-65 253.8 177 70.6
ClCG05G025100 Citrullus lanatus HOM05D005184 ORTHO05D006222 2.2e-65 252.7 161 77.6
Gorai.002G161300 Gossypium raimondii HOM05D005184 ORTHO05D006222 3.8e-65 251.9 204 64.2
Eucgr.B02549 Eucalyptus grandis HOM05D005184 ORTHO05D006222 5.0e-65 251.5 169 72.2
Haze_12160 Corylus avellana HOM05D005184 ORTHO05D006222 1.4e-64 250.0 175 73.7
Sc04g0008930 Simmondsia chinensis HOM05D005184 ORTHO05D006222 1.4e-64 250.0 171 73.7
CSS0049337 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 3.2e-64 248.8 170 72.9
Os02g0741900 Oryza sativa ssp. japonica HOM05D005184 ORTHO05D006222 2.1e-63 246.1 183 66.7
FAN12G2936 Fragaria x ananassa HOM05D005184 ORTHO05D006222 7.9e-63 244.2 180 68.3
FAN17G0007 Fragaria x ananassa HOM05D005184 ORTHO05D006222 7.9e-63 244.2 183 68.9
FAN22G1244 Fragaria x ananassa HOM05D005184 ORTHO05D006222 7.9e-63 244.2 183 68.9
Mapoly0065s0085 Marchantia polymorpha HOM05D005184 ORTHO05D006222 2.3e-62 242.7 173 68.2
FAN07G0314 Fragaria x ananassa HOM05D005184 ORTHO05D006222 3.0e-62 242.3 183 67.8
CDE04G2481 Ceratophyllum demersum HOM05D006272 ORTHO05D006222 1.1e-61 240.4 191 66.0
Zm00001eb254250 Zea mays HOM05D005184 ORTHO05D006222 3.3e-61 238.8 177 65.5
Zm00001eb194690 Zea mays HOM05D005184 ORTHO05D006222 4.3e-61 238.4 177 65.5
CSS0034024 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 7.4e-61 237.7 169 70.4
CSS0033197 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 1.2e-58 230.3 182 65.9
CSS0002866 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 2.0e-58 229.6 163 70.6
TAR622G1169 Trochodendron aralioides HOM05D005184 ORTHO05D006222 2.6e-58 229.2 163 72.4
DCAR_007099 Daucus carota HOM05D005184 ORTHO05D006222 2.2e-57 226.1 178 68.5
CSS0009826 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 1.1e-56 223.8 161 70.2
GSVIVG01020163001 Vitis vinifera HOM05D005184 ORTHO05D006222 1.9e-56 223.0 136 81.6
RcHm_v2.0_Chr3g0467191 Rosa chinensis HOM05D005184 ORTHO05D006222 6.1e-55 218.0 170 63.5
unitig_749.g13268 Utricularia gibba HOM05D005184 ORTHO05D006222 3.0e-54 215.7 187 61.0
THA.LOC104822060 Tarenaya hassleriana HOM05D005184 ORTHO05D006222 5.1e-54 214.9 180 59.4
RcHm_v2.0_Chr1g0347741 Rosa chinensis HOM05D005184 ORTHO05D006222 1.5e-53 213.4 147 68.7
CBR_g30806 Chara braunii HOM05D005184 ORTHO05D006222 2.0e-53 213.0 175 58.9
SGA_v2.0_scaffold166G38348 Striga asiatica HOM05D005184 ORTHO05D006222 2.0e-53 213.0 144 75.0
CBR_g30798 Chara braunii HOM05D005184 ORTHO05D006222 3.3e-53 212.2 175 58.9
CDE06G1803 Ceratophyllum demersum HOM05D005184 ORTHO05D006222 9.7e-53 210.7 171 64.9
AUR62005318 Chenopodium quinoa HOM05D005184 ORTHO05D006222 2.8e-52 209.1 136 77.2
Lj3A1049G57 Lonicera japonica HOM05D005184 ORTHO05D006222 3.7e-52 208.8 130 80.8
Pp3c1_7410 Physcomitrium patens HOM05D005184 ORTHO05D006222 8.2e-52 207.6 172 61.0
HPP92_015265 Vanilla planifolia HOM05D000076 ORTHO05D002949 8.2e-52 207.6 186 60.2
Phvul.003G054101 Phaseolus vulgaris HOM05D005184 ORTHO05D006222 1.2e-50 203.8 127 80.3
Carub.0001s2347 Capsella rubella HOM05D005184 ORTHO05D006222 2.0e-50 203.0 180 56.1
Sp1g21380 Schrenkiella parvula HOM05D005184 ORTHO05D006222 4.5e-50 201.8 178 56.7
AL1G37810 Arabidopsis lyrata HOM05D005184 ORTHO05D006222 2.2e-49 199.5 171 59.1
RcHm_v2.0_Chr2g0143691 Rosa chinensis HOM05D005184 ORTHO05D006222 3.8e-49 198.7 147 66.0
THA.LOC104808902 Tarenaya hassleriana HOM05D005184 ORTHO05D006222 3.8e-49 198.7 171 57.9
Aa31LG7G7840 Aethionema arabicum HOM05D005184 ORTHO05D006222 6.5e-49 198.0 171 58.5
AT1G24050 Arabidopsis thaliana HOM05D005184 ORTHO05D006222 1.1e-48 197.2 171 58.5
AagrBONN_evm.TU.Sc2ySwM_344.3206 Anthoceros agrestis HOM05D005184 ORTHO05D006222 1.6e-47 193.4 160 56.9
ATR1149G050 Amborella trichopoda HOM05D005184 ORTHO05D006222 8.0e-47 191.0 128 74.2
BcaC05g26302 Brassica carinata HOM05D005184 ORTHO05D006222 1.0e-46 190.7 174 56.3
RcHm_v2.0_Chr7g0224821 Rosa chinensis HOM05D005184 ORTHO05D006222 3.0e-46 189.1 126 70.6
BcaB07g32379 Brassica carinata HOM05D005184 ORTHO05D006222 2.0e-45 186.4 169 56.2
Thhalv10009785m.g Eutrema salsugineum HOM05D005184 ORTHO05D006222 2.0e-45 186.4 174 55.2
BolC5t31020H Brassica oleracea HOM05D005184 ORTHO05D006222 2.6e-45 186.0 175 56.0
BraA07t29118Z Brassica rapa HOM05D005184 ORTHO05D006222 9.7e-45 184.1 172 53.5
Nitab4.5_0000031g0060 Nicotiana tabacum HOM05D005184 ORTHO05D006222 1.3e-44 183.7 197 54.3
SMO117G0191 Selaginella moellendorffii HOM05D005184 ORTHO05D006222 2.2e-44 183.0 173 54.9
Hund05960 Selenicereus undatus HOM05D005184 ORTHO05D006222 2.2e-44 183.0 121 76.0
Sed0020204 Sechium edule HOM05D005184 ORTHO05D006222 2.8e-44 182.6 131 68.7
C07p20080 Brassica napus HOM05D005184 ORTHO05D006222 4.8e-44 181.8 172 52.3
BolC7t42528H Brassica oleracea HOM05D005184 ORTHO05D006222 4.8e-44 181.8 172 52.3
BraA09t39575Z Brassica rapa HOM05D005184 ORTHO05D006222 8.2e-44 181.0 175 54.9
RcHm_v2.0_Chr4g0444381 Rosa chinensis HOM05D005184 ORTHO05D006222 4.1e-43 178.7 114 79.8
C05p23190 Brassica napus HOM05D001690 ORTHO05D009096 1.5e-40 170.2 164 54.3
A09p40800 Brassica napus HOM05D001690 ORTHO05D009096 4.2e-40 168.7 164 54.3
Duzib248G0500 Durio zibethinus HOM05D005184 ORTHO05D006222 7.2e-40 167.9 134 64.9
Prupe.1G258500 Prunus persica HOM05D005184 ORTHO05D006222 2.6e-37 159.5 121 66.1
BcaB03g14122 Brassica carinata HOM05D005184 ORTHO05D006222 1.3e-36 157.1 121 63.6
Pp3c7_23840 Physcomitrium patens HOM05D005184 ORTHO05D006222 1.7e-36 156.8 139 61.2
Sp5g25350 Schrenkiella parvula HOM05D005184 ORTHO05D006222 1.7e-36 156.8 185 44.3
AL2G29520 Arabidopsis lyrata HOM05D005184 ORTHO05D006222 1.1e-35 154.1 169 47.9
Carub.0002s1692 Capsella rubella HOM05D005184 ORTHO05D006222 9.1e-35 151.0 177 45.8
Thhalv10019170m.g Eutrema salsugineum HOM05D005184 ORTHO05D006222 1.6e-34 150.2 194 44.8
CSS0000441 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 2.9e-33 146.0 116 64.7
BraA02t06699Z Brassica rapa HOM05D005184 ORTHO05D006222 1.5e-32 143.7 177 42.9
BcaC03g15168 Brassica carinata HOM05D005184 ORTHO05D006222 1.9e-32 143.3 176 44.3
A02p16400 Brassica napus HOM05D005184 ORTHO05D006222 4.2e-32 142.1 195 40.5
CARHR024350 Cardamine hirsuta HOM05D005184 ORTHO05D006222 4.2e-32 142.1 136 54.4
EL10Ac6g13619 Beta vulgaris HOM05D005184 ORTHO05D006222 5.5e-32 141.7 157 52.2
C02p27410 Brassica napus HOM05D005184 ORTHO05D006222 2.1e-31 139.8 176 43.8
BolC2t08801H Brassica oleracea HOM05D005184 ORTHO05D006222 2.1e-31 139.8 176 43.8
CARHR063340 Cardamine hirsuta HOM05D005184 ORTHO05D006222 4.7e-31 138.7 174 43.7
Cc02_g24860 Coffea canephora HOM05D005184 ORTHO05D006222 8.0e-31 137.9 163 49.7
AT1G70220 Arabidopsis thaliana HOM05D005184 ORTHO05D006222 1.4e-30 137.1 169 43.2
BcaC06g35075 Brassica carinata HOM05D005184 ORTHO05D006222 2.0e-29 133.3 174 44.8
vmacro22616 Vaccinium macrocarpon HOM05D005184 ORTHO05D006222 3.4e-29 132.5 83 81.9
Cre10.g421850 Chlamydomonas reinhardtii HOM05D005184 ORTHO05D006222 3.5e-26 122.5 169 39.6
BcaB05g24540 Brassica carinata HOM05D005184 ORTHO05D006222 2.1e-23 113.2 130 47.7
Cc00_g31660 Coffea canephora HOM05D005184 ORTHO05D006222 6.8e-22 108.2 133 49.6
A07p13470 Brassica napus HOM05D005184 ORTHO05D006222 2.6e-21 106.3 161 36.0
MCO16G256 Micromonas commoda HOM05D005184 ORTHO05D006222 8.3e-20 101.3 171 36.8
Prupe.1G258600 Prunus persica HOM05D005184 ORTHO05D006222 1.3e-17 94.0 55 83.6
QL03p062286 Quercus lobata HOM05D005184 ORTHO05D006222 1.7e-17 93.6 64 76.6
BcaB02g09680 Brassica carinata HOM05D000630 ORTHO05D014858 3.9e-17 92.4 84 57.1
Solyc04g025670.4 Solanum lycopersicum HOM05D005184 ORTHO05D006222 3.9e-17 92.4 55 81.8
vmacro22617 Vaccinium macrocarpon HOM05D005184 ORTHO05D006222 6.6e-17 91.7 53 83.0
Nitab4.5_0000925g0110 Nicotiana tabacum HOM05D005184 ORTHO05D006222 3.3e-16 89.4 55 80.0
Cc00_g05590 Coffea canephora HOM05D005184 ORTHO05D006222 2.1e-15 86.7 86 54.7
CSS0046251 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 5.2e-14 82.0 53 75.5
PRCOL_00005775 Prasinoderma coloniale HOM05D005184 ORTHO05D006222 5.2e-14 82.0 98 48.0
Cc00_g11840 Coffea canephora HOM05D001087 ORTHO05D006222 7.5e-13 78.2 79 54.4
Peaxi162Scf00792g00021 Petunia axillaris HOM05D005184 ORTHO05D006222 2.9e-12 76.3 41 87.8
RcHm_v2.0_Chr4g0444371 Rosa chinensis HOM05D005184 ORTHO05D006222 9.2e-11 71.2 44 68.2
BolC5t28869H Brassica oleracea HOM05D000630 ORTHO05D014858 3.5e-10 69.3 67 52.2


User provided reference genes

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