Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_22661_v3 Cicer arietinum L. HOM05D005023 ORTHO05D006009 8.7e-179 630.2 316 100.0
TPR.G14159 Trifolium pratense HOM05D005023 ORTHO05D006009 1.9e-149 532.7 316 83.5
Medtr8g066330 Medicago truncatula HOM05D005023 ORTHO05D006009 1.8e-144 516.2 314 81.2
Psat4g122680 Pisum sativum HOM05D005023 ORTHO05D006009 2.1e-132 476.1 275 84.0
Psat4g122280 Pisum sativum HOM05D005023 ORTHO05D006009 1.2e-124 450.3 261 85.8
Lj6g0028231 Lotus japonicus HOM05D005023 ORTHO05D006009 4.7e-124 448.4 310 71.6
Lalb_Chr25g0286701 Lupinus albus HOM05D005023 ORTHO05D006009 4.7e-124 448.4 308 72.1
arahy.Tifrunner.gnm1.ann1.6CH5L4 Arachis hypogaea HOM05D005023 ORTHO05D006009 3.1e-107 392.5 316 64.2
arahy.Tifrunner.gnm1.ann1.NK2KWA Arachis hypogaea HOM05D005023 ORTHO05D006009 4.0e-107 392.1 316 64.2
arahy.Tifrunner.gnm1.ann1.J93PEP Arachis hypogaea HOM05D005023 ORTHO05D006009 9.8e-106 387.5 316 63.6
Phvul.009G009200 Phaseolus vulgaris HOM05D005023 ORTHO05D006009 4.9e-105 385.2 300 66.3
Glyma.06G013600 Glycine max HOM05D005023 ORTHO05D006009 3.5e-103 379.0 302 65.6
TPR.G3350 Trifolium pratense HOM05D005023 ORTHO05D006009 1.0e-102 377.5 244 78.3
Glyma.04G013700 Glycine max HOM05D005023 ORTHO05D006009 4.4e-98 362.1 306 64.4
Cfa012488 Carpinus fangiana HOM05D005023 ORTHO05D006009 2.1e-84 316.6 323 52.3
QL12p004398 Quercus lobata HOM05D005023 ORTHO05D006009 5.3e-83 312.0 318 50.9
arahy.Tifrunner.gnm1.ann1.GAHP45 Arachis hypogaea HOM05D005023 ORTHO05D006009 6.9e-83 311.6 283 57.6
CiPaw.11G096900 Carya illinoinensis HOM05D005023 ORTHO05D006009 1.3e-78 297.4 316 50.3
Thecc.03G307500 Theobroma cacao HOM05D005023 ORTHO05D006009 1.4e-75 287.3 321 48.6
RcHm_v2.0_Chr7g0211361 Rosa chinensis HOM05D005023 ORTHO05D006009 1.5e-74 283.9 306 48.0
Duzib084G0965 Durio zibethinus HOM05D005023 ORTHO05D006009 2.0e-74 283.5 267 55.1
Ciclev10016033m.g Citrus clementina HOM05D005023 ORTHO05D006009 3.4e-74 282.7 314 48.4
COL.COLO4_16967 Corchorus olitorius HOM05D005023 ORTHO05D006009 5.8e-74 282.0 267 53.6
GSVIVG01013101001 Vitis vinifera HOM05D005023 ORTHO05D006009 6.4e-73 278.5 314 47.8
Potri.003G095200 Populus trichocarpa HOM05D005023 ORTHO05D006009 1.1e-72 277.7 319 46.1
Prupe.5G030700 Prunus persica HOM05D005023 ORTHO05D006009 1.4e-72 277.3 323 46.4
CANSAT54G0648 Cannabis sativa HOM05D005023 ORTHO05D006009 3.2e-72 276.2 310 46.5
Atru.chr12.846 Acer truncatum HOM05D005023 ORTHO05D006009 7.1e-72 275.0 280 50.4
Cpa.g.sc90.15 Carica papaya HOM05D005023 ORTHO05D006009 1.2e-71 274.2 276 50.4
FAN08G0704 Fragaria x ananassa HOM05D005023 ORTHO05D006009 1.2e-71 274.2 305 46.9
TWI60G0688 Tripterygium wilfordii HOM05D005023 ORTHO05D006009 1.3e-70 270.8 267 50.9
FvH4_5g22760 Fragaria vesca HOM05D005023 ORTHO05D006009 2.3e-70 270.0 305 45.9
FAN18G3597 Fragaria x ananassa HOM05D005023 ORTHO05D006009 2.3e-70 270.0 305 45.9
FAN13G2198 Fragaria x ananassa HOM05D005023 ORTHO05D006009 3.9e-70 269.2 305 45.9
FAN13G2978 Fragaria x ananassa HOM05D005023 ORTHO05D006009 3.9e-70 269.2 305 45.9
FAN18G4268 Fragaria x ananassa HOM05D005023 ORTHO05D006009 1.1e-69 267.7 305 45.6
Haze_08177 Corylus avellana HOM05D005023 ORTHO05D006009 2.5e-69 266.5 247 55.1
MD06G1038100 Malus domestica HOM05D005023 ORTHO05D006009 1.3e-68 264.2 286 47.2
Dinv28986 Davidia involucrata HOM05D005023 ORTHO05D006009 2.8e-68 263.1 303 47.2
Aqoxy1G01584 Aquilegia oxysepala HOM05D005023 ORTHO05D006009 3.7e-68 262.7 265 49.4
Manes.02G223400 Manihot esculenta HOM05D005023 ORTHO05D006009 6.2e-68 261.9 293 46.1
Gohir.A12G206900 Gossypium hirsutum HOM05D005023 ORTHO05D006009 1.7e-65 253.8 271 48.3
Gorai.008G224900 Gossypium raimondii HOM05D005023 ORTHO05D006009 2.2e-65 253.4 314 44.3
Gohir.D12G209350 Gossypium hirsutum HOM05D005023 ORTHO05D006009 4.9e-65 252.3 271 48.7
Sabra01G0107600 Salix brachista HOM05D005023 ORTHO05D006009 1.1e-64 251.1 294 46.9
PGSC0003DMG400014810 Solanum tuberosum HOM05D005023 ORTHO05D006009 3.2e-64 249.6 265 49.1
DCAR_031128 Daucus carota HOM05D005023 ORTHO05D006009 3.5e-63 246.1 264 48.1
Solyc08g076570.3 Solanum lycopersicum HOM05D005023 ORTHO05D006009 4.6e-63 245.7 262 48.9
PSO170G6706 Papaver somniferum HOM05D005023 ORTHO05D006009 6.0e-63 245.4 275 46.9
Hma1.2p1_2161F.1_g315620 Hydrangea macrophylla HOM05D005023 ORTHO05D006009 7.9e-63 245.0 269 48.7
Actinidia09175 Actinidia chinensis HOM05D005023 ORTHO05D006009 2.3e-62 243.4 302 44.4
Sopen08g025130 Solanum pennellii HOM05D005023 ORTHO05D006009 2.3e-62 243.4 265 48.3
PSO302G0152 Papaver somniferum HOM05D005023 ORTHO05D006009 6.7e-62 241.9 275 46.9
Nitab4.5_0002380g0110 Nicotiana tabacum HOM05D005023 ORTHO05D006009 1.1e-61 241.1 263 47.9
FAN04G1126 Fragaria x ananassa HOM05D005023 ORTHO05D006009 2.5e-61 240.0 262 48.1
CSS0008599 Camellia sinensis var. sinensis HOM05D005023 ORTHO05D006009 3.3e-61 239.6 310 42.3
CAN.G298.60 Capsicum annuum HOM05D005023 ORTHO05D006009 5.7e-61 238.8 262 47.3
CAN.G298.61 Capsicum annuum HOM05D005023 ORTHO05D006009 5.7e-61 238.8 262 47.3
CAN.G726.32 Capsicum annuum HOM05D005023 ORTHO05D006009 5.7e-61 238.8 262 47.3
Lsat_1_v5_gn_6_80180 Lactuca sativa HOM05D005023 ORTHO05D006009 9.6e-61 238.0 263 43.3
Peaxi162Scf00170g00918 Petunia axillaris HOM05D005023 ORTHO05D006009 2.8e-60 236.5 268 47.0
Actinidia25987 Actinidia chinensis HOM05D005023 ORTHO05D006009 9.0e-59 231.5 251 47.0
PSO782G3892 Papaver somniferum HOM05D005023 ORTHO05D006009 9.0e-59 231.5 277 44.8
Nitab4.5_0004669g0010 Nicotiana tabacum HOM05D005023 ORTHO05D006009 1.2e-58 231.1 260 47.7
vmacro00304 Vaccinium macrocarpon HOM05D005023 ORTHO05D006009 1.2e-58 231.1 243 51.0
Sabra03G0064200 Salix brachista HOM05D005023 ORTHO05D006009 3.4e-58 229.6 244 49.6
ECA240G3323 Erigeron canadensis HOM05D005023 ORTHO05D006009 1.3e-57 227.6 260 45.0
Nitab4.5_0000353g0050 Nicotiana tabacum HOM05D005023 ORTHO05D006009 6.5e-57 225.3 253 47.8
Lj2A234G45 Lonicera japonica HOM05D005023 ORTHO05D006009 3.2e-56 223.0 344 41.9
Eucgr.E00250 Eucalyptus grandis HOM05D005023 ORTHO05D006009 9.3e-56 221.5 266 41.7
Nitab4.5_0004839g0010 Nicotiana tabacum HOM05D005023 ORTHO05D006009 9.3e-56 221.5 251 46.6
ClCG04G001320 Citrullus lanatus HOM05D005023 ORTHO05D006009 1.2e-55 221.1 309 42.7
Cc08_g03230 Coffea canephora HOM05D005023 ORTHO05D006009 3.5e-55 219.5 265 45.3
PGR042G2438 Punica granatum HOM05D005023 ORTHO05D006009 7.9e-55 218.4 286 40.2
Rhsim07G0130800 Rhododendron simsii HOM05D005023 ORTHO05D006009 2.3e-54 216.9 281 42.0
MBI02_g28332_MAGBIO Magnolia biondii HOM05D005023 ORTHO05D006009 5.1e-54 215.7 313 41.5
Nn7g38116 Nelumbo nucifera HOM05D005023 ORTHO05D006009 6.7e-54 215.3 310 41.3
Sed0002054 Sechium edule HOM05D005023 ORTHO05D006009 6.7e-54 215.3 251 44.6
MSTRG.1995 Avicennia marina HOM05D005023 ORTHO05D006009 3.3e-53 213.0 265 44.9
AL8G11450 Arabidopsis lyrata HOM05D005023 ORTHO05D006009 5.7e-53 212.2 299 43.8
HanXRQChr03g0083581 Helianthus annuus HOM05D005023 ORTHO05D006009 7.4e-53 211.8 264 40.9
AT5G46850 Arabidopsis thaliana HOM05D005023 ORTHO05D006009 8.2e-52 208.4 295 43.4
AUR62033976 Chenopodium quinoa HOM05D005023 ORTHO05D006009 8.2e-52 208.4 264 43.9
Migut.E00780 Erythranthe guttata HOM05D005023 ORTHO05D006009 8.2e-52 208.4 265 42.6
BcaC06g31439 Brassica carinata HOM05D005023 ORTHO05D006009 1.4e-51 207.6 285 44.9
A06p45570 Brassica napus HOM05D005023 ORTHO05D006009 3.1e-51 206.5 270 44.8
BraA06t27429Z Brassica rapa HOM05D005023 ORTHO05D006009 5.3e-51 205.7 301 42.9
SGA_v2.0_scaffold6G03150 Striga asiatica HOM05D005023 ORTHO05D006009 6.9e-51 205.3 291 40.2
EL10Ac8g19220 Beta vulgaris HOM05D005023 ORTHO05D006009 2.0e-50 203.8 275 41.5
Aa31sc182G50 Aethionema arabicum HOM05D005023 ORTHO05D006009 2.6e-50 203.4 303 43.2
BcaC06g34337 Brassica carinata HOM05D005023 ORTHO05D006009 2.6e-50 203.4 270 44.1
C07p30210 Brassica napus HOM05D005023 ORTHO05D006009 2.6e-50 203.4 270 44.1
THA.LOC104806696 Tarenaya hassleriana HOM05D005023 ORTHO05D006009 1.0e-49 201.4 302 44.0
SalBow6G4088 Salvia bowleyana HOM05D005023 ORTHO05D006009 1.3e-49 201.1 262 43.5
Sp2g11650 Schrenkiella parvula HOM05D005023 ORTHO05D006009 1.3e-49 201.1 278 45.3
SalBow6G6255 Salvia bowleyana HOM05D005023 ORTHO05D006009 2.2e-49 200.3 265 42.6
BolC7t43557H Brassica oleracea HOM05D005023 ORTHO05D006009 2.9e-49 199.9 270 43.3
Ah.12g065340 Amaranthus hybridus HOM05D005023 ORTHO05D006009 5.0e-49 199.1 274 41.2
CsaV3_1G033210 Cucumis sativus L. HOM05D000021 ORTHO05D000010 5.0e-49 199.1 280 41.1
SalBow6G3389 Salvia bowleyana HOM05D005023 ORTHO05D006009 6.5e-49 198.7 263 42.6
SalBow6G2872 Salvia bowleyana HOM05D005023 ORTHO05D006009 8.5e-49 198.4 263 42.6
SalBow6G3524 Salvia bowleyana HOM05D005023 ORTHO05D006009 8.5e-49 198.4 263 42.6
SalBow8G0269 Salvia bowleyana HOM05D005023 ORTHO05D006009 8.5e-49 198.4 263 42.6
SalBow6G3383 Salvia bowleyana HOM05D005023 ORTHO05D006009 1.4e-48 197.6 263 42.2
SalBow6G4332 Salvia bowleyana HOM05D005023 ORTHO05D006009 1.4e-48 197.6 263 42.6
SalBow6G6227 Salvia bowleyana HOM05D005023 ORTHO05D006009 1.4e-48 197.6 263 42.2
SalBow6G6031 Salvia bowleyana HOM05D005023 ORTHO05D006009 1.9e-48 197.2 263 42.6
Thhalv10000976m.g Eutrema salsugineum HOM05D005023 ORTHO05D006009 3.2e-48 196.4 264 45.8
SalBow6G1717 Salvia bowleyana HOM05D005023 ORTHO05D006009 3.2e-48 196.4 263 42.2
Hund11209 Selenicereus undatus HOM05D005023 ORTHO05D006009 5.5e-48 195.7 263 44.1
CARHR174600 Cardamine hirsuta HOM05D005023 ORTHO05D006009 7.2e-48 195.3 297 42.8
SalBow6G6846 Salvia bowleyana HOM05D005023 ORTHO05D006009 7.2e-48 195.3 263 42.6
Carub.0008s0106 Capsella rubella HOM05D005023 ORTHO05D006009 1.6e-47 194.1 264 45.5
PSO063G5178 Papaver somniferum HOM05D005023 ORTHO05D006009 1.6e-47 194.1 190 54.2
SalBow6G3781 Salvia bowleyana HOM05D005023 ORTHO05D006009 3.3e-45 186.4 239 44.8
Os12g0596900 Oryza sativa ssp. japonica HOM05D005023 ORTHO05D006009 6.9e-43 178.7 203 47.3
CDE02G4581 Ceratophyllum demersum HOM05D005023 ORTHO05D006009 8.5e-41 171.8 258 39.5
Zm00001eb030880 Zea mays HOM05D005023 ORTHO05D006009 2.1e-39 167.2 222 44.1
Sc01g0007280 Simmondsia chinensis HOM05D005023 ORTHO05D006009 2.7e-39 166.8 272 38.6
HPP92_014902 Vanilla planifolia HOM05D005023 ORTHO05D006009 2.3e-38 163.7 243 38.7
HPP92_014897 Vanilla planifolia HOM05D005023 ORTHO05D006009 3.0e-38 163.3 243 39.5
SHI20240 Sapria himalayana HOM05D000452 ORTHO05D000647 1.1e-37 161.4 257 36.6
MELO3C033076.2 Cucumis melo HOM05D005023 ORTHO05D006009 2.6e-37 160.2 244 39.8
Hma1.2p1_1594F.1_g292650 Hydrangea macrophylla HOM05D005023 ORTHO05D006009 2.6e-37 160.2 215 45.1
Hma1.2p1_2161F.1_g315630 Hydrangea macrophylla HOM05D005023 ORTHO05D006009 4.1e-35 152.9 156 51.9
unitig_21.g20893 Utricularia gibba HOM05D005023 ORTHO05D004745 5.3e-35 152.5 258 37.2
SalBow6G5471 Salvia bowleyana HOM05D005023 ORTHO05D006009 7.0e-35 152.1 195 42.6
SalBow6G0983 Salvia bowleyana HOM05D005023 ORTHO05D006009 3.5e-34 149.8 165 46.1
SalBow6G0969 Salvia bowleyana HOM05D005023 ORTHO05D006009 7.7e-34 148.7 176 44.9
SalBow6G1311 Salvia bowleyana HOM05D005023 ORTHO05D006009 6.5e-33 145.6 176 44.3
ATR0580G166 Amborella trichopoda HOM05D005237 ORTHO05D006189 8.5e-33 145.2 192 39.6
Solyc08g076550.3 Solanum lycopersicum HOM05D005023 ORTHO05D006009 2.7e-31 140.2 160 46.2
Actinidia09177 Actinidia chinensis HOM05D005023 ORTHO05D006009 2.6e-29 133.7 260 32.7
SalBow6G6268 Salvia bowleyana HOM05D005023 ORTHO05D006009 4.1e-27 126.3 153 45.1
Hma1.2p1_0572F.1_g181170 Hydrangea macrophylla HOM05D005023 ORTHO05D006009 2.2e-25 120.6 129 54.3
SalBow6G0951 Salvia bowleyana HOM05D005023 ORTHO05D006009 1.2e-23 114.8 143 44.1
Mapoly0088s0063 Marchantia polymorpha HOM05D005023 ORTHO05D006009 4.0e-22 109.8 199 31.2
SMO358G0075 Selaginella moellendorffii HOM05D005023 ORTHO05D006009 3.5e-18 96.7 195 31.8
MELO3C011047.2 Cucumis melo HOM05D005023 ORTHO05D006009 4.5e-18 96.3 102 49.0
TAR375G0008 Trochodendron aralioides HOM05D005023 ORTHO05D006009 2.9e-17 93.6 231 32.5
Pp3c13_7870 Physcomitrium patens HOM05D005023 ORTHO05D006009 6.5e-17 92.4 213 29.1
CSS0036970 Camellia sinensis var. sinensis HOM05D005023 ORTHO05D006009 6.3e-12 75.9 91 39.6
AagrBONN_evm.TU.Sc2ySwM_344.1294 Anthoceros agrestis HOM05D005023 ORTHO05D006009 8.3e-12 75.5 156 30.1
SalBow6G7173 Salvia bowleyana HOM05D005023 ORTHO05D006009 3.6e-07 60.1 88 40.9
SEGI_33873 Sequoiadendron giganteum HOM05D005023 ORTHO05D006009 6.1e-07 59.3 155 29.0


User provided reference genes

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