Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_22650_v3 Cicer arietinum L. HOM05D002385 ORTHO05D002245 5.7e-26 120.2 62 100.0
Medtr3g081140 Medicago truncatula HOM05D002385 ORTHO05D002245 7.5e-18 93.2 60 81.7
Glyma.13G003300 Glycine max HOM05D002385 ORTHO05D002245 6.6e-14 80.1 62 74.2
Lj6g0002718 Lotus japonicus HOM05D002385 ORTHO05D002245 3.3e-13 77.8 64 71.9
Duzib138G1429 Durio zibethinus HOM05D002385 ORTHO05D002245 3.6e-12 74.3 66 66.7
QL04p061416 Quercus lobata HOM05D002385 ORTHO05D002245 3.6e-12 74.3 63 73.0
ClCG11G016780 Citrullus lanatus HOM05D002385 ORTHO05D002245 1.5e-10 68.9 65 67.7
Duzib133G0918 Durio zibethinus HOM05D002385 ORTHO05D002245 1.5e-10 68.9 64 70.3
Thecc.01G172200 Theobroma cacao HOM05D002385 ORTHO05D002245 2.6e-10 68.2 67 67.2
Phvul.006G001200 Phaseolus vulgaris HOM05D002385 ORTHO05D002245 7.5e-10 66.6 62 71.0
Atru.chr8.975 Acer truncatum HOM05D002385 ORTHO05D002245 9.8e-10 66.2 71 62.0
Atru.chr8.976 Acer truncatum HOM05D002385 ORTHO05D002245 9.8e-10 66.2 71 62.0
Prupe.3G187200 Prunus persica HOM05D002385 ORTHO05D002245 1.7e-09 65.5 52 78.8
Sed0001434 Sechium edule HOM05D002385 ORTHO05D002245 1.7e-09 65.5 65 64.6
Oeu048060.1 Olea europaea HOM05D002385 ORTHO05D002245 2.2e-09 65.1 68 63.2
MELO3C026402.2 Cucumis melo HOM05D002385 ORTHO05D002245 2.9e-09 64.7 64 67.2
Oeu003091.1 Olea europaea HOM05D002385 ORTHO05D002245 2.9e-09 64.7 68 63.2
Eucgr.A00897 Eucalyptus grandis HOM05D002385 ORTHO05D002245 3.7e-09 64.3 61 62.3
Gorai.001G092800 Gossypium raimondii HOM05D002385 ORTHO05D002245 3.7e-09 64.3 68 61.8
PGR031G2469 Punica granatum HOM05D002385 ORTHO05D002245 3.7e-09 64.3 64 65.6
Actinidia30458 Actinidia chinensis HOM05D002385 ORTHO05D002245 4.9e-09 63.9 66 63.6
Actinidia39326 Actinidia chinensis HOM05D002385 ORTHO05D002245 4.9e-09 63.9 65 63.1
CsaV3_4G032300 Cucumis sativus L. HOM05D002385 ORTHO05D002245 4.9e-09 63.9 63 66.7
Gohir.D07G086800 Gossypium hirsutum HOM05D002385 ORTHO05D002245 4.9e-09 63.9 68 61.8
COL.COLO4_07164 Corchorus olitorius HOM05D002385 ORTHO05D002245 6.4e-09 63.5 67 64.2
Eucgr.A00896 Eucalyptus grandis HOM05D002385 ORTHO05D002245 6.4e-09 63.5 61 62.3
Eucgr.A00898 Eucalyptus grandis HOM05D002385 ORTHO05D002245 6.4e-09 63.5 61 62.3
QL04p061407 Quercus lobata HOM05D002385 ORTHO05D002245 6.4e-09 63.5 66 63.6
THA.LOC104826161 Tarenaya hassleriana HOM05D002385 ORTHO05D002245 6.4e-09 63.5 68 66.2
TWI60G1403 Tripterygium wilfordii HOM05D002385 ORTHO05D002245 6.4e-09 63.5 61 65.6
VMungo0540G2222 Vigna mungo HOM05D002385 ORTHO05D002245 6.4e-09 63.5 47 72.3
CiPaw.03G113600 Carya illinoinensis HOM05D002385 ORTHO05D002245 8.3e-09 63.2 65 64.6
Oeu048064.1 Olea europaea HOM05D002385 ORTHO05D002245 8.3e-09 63.2 68 61.8
Prupe.6G185600 Prunus persica HOM05D002385 ORTHO05D002245 8.3e-09 63.2 60 70.0
RcHm_v2.0_Chr2g0153741 Rosa chinensis HOM05D002385 ORTHO05D002245 8.3e-09 63.2 69 62.3
Sabra16G0021200 Salix brachista HOM05D002385 ORTHO05D002245 8.3e-09 63.2 70 62.9
Sabra16G0025900 Salix brachista HOM05D002385 ORTHO05D002245 8.3e-09 63.2 70 62.9
Sabra06G0015400 Salix brachista HOM05D002385 ORTHO05D002245 1.1e-08 62.8 61 65.6
AT3G22240 Arabidopsis thaliana HOM05D002385 ORTHO05D002245 1.4e-08 62.4 54 72.2
Dinv02957 Davidia involucrata HOM05D002385 ORTHO05D002245 1.4e-08 62.4 66 60.6
Duzib133G1087 Durio zibethinus HOM05D002385 ORTHO05D002245 1.4e-08 62.4 57 70.2
FAN23G3060 Fragaria x ananassa HOM05D002385 ORTHO05D002245 1.4e-08 62.4 56 71.4
Prupe.3G187300 Prunus persica HOM05D002385 ORTHO05D002245 1.4e-08 62.4 49 79.6
RcHm_v2.0_Chr2g0153701 Rosa chinensis HOM05D002385 ORTHO05D002245 1.4e-08 62.4 57 68.4
QL04p061381 Quercus lobata HOM05D002385 ORTHO05D002245 1.9e-08 62.0 66 63.6
RcHm_v2.0_Chr2g0114521 Rosa chinensis HOM05D002385 ORTHO05D002245 1.9e-08 62.0 71 62.0
Carub.0003s2241 Capsella rubella HOM05D002385 ORTHO05D002245 2.4e-08 61.6 52 73.1
Manes.09G073500 Manihot esculenta HOM05D002385 ORTHO05D002245 2.4e-08 61.6 62 62.9
QL04p061357 Quercus lobata HOM05D002385 ORTHO05D002245 2.4e-08 61.6 66 62.1
AL3G36500 Arabidopsis lyrata HOM05D002385 ORTHO05D002245 3.2e-08 61.2 54 70.4
Cfa023569 Carpinus fangiana HOM05D002385 ORTHO05D002245 3.2e-08 61.2 55 70.9
HanXRQChr03g0078081 Helianthus annuus HOM05D002385 ORTHO05D002245 3.2e-08 61.2 57 66.7
RcHm_v2.0_Chr2g0114501 Rosa chinensis HOM05D002385 ORTHO05D002245 3.2e-08 61.2 60 68.3
GSVIVG01015780001 Vitis vinifera HOM05D002385 ORTHO05D002245 3.2e-08 61.2 62 69.4
Sp3g20030 Schrenkiella parvula HOM05D002385 ORTHO05D002245 4.1e-08 60.8 64 64.1
FvH4_1g21001 Fragaria vesca HOM05D002385 ORTHO05D002245 5.4e-08 60.5 64 64.1
Gohir.A07G081200 Gossypium hirsutum HOM05D002385 ORTHO05D002245 5.4e-08 60.5 58 63.8
MD09G1137600 Malus domestica HOM05D002385 ORTHO05D002245 5.4e-08 60.5 49 75.5
Potri.016G019201 Populus trichocarpa HOM05D002385 ORTHO05D002245 5.4e-08 60.5 67 56.7
BcaC09g49159 Brassica carinata HOM05D002385 ORTHO05D002245 7.1e-08 60.1 63 66.7
C01p42010 Brassica napus HOM05D002385 ORTHO05D002245 7.1e-08 60.1 58 70.7
Thhalv10021881m.g Eutrema salsugineum HOM05D002385 ORTHO05D002245 7.1e-08 60.1 52 71.2
GSVIVG01015781001 Vitis vinifera HOM05D002385 ORTHO05D002245 7.1e-08 60.1 63 71.4
GSVIVG01015789001 Vitis vinifera HOM05D002385 ORTHO05D002245 7.1e-08 60.1 63 71.4
BcaC02g07945 Brassica carinata HOM05D002385 ORTHO05D002245 9.2e-08 59.7 59 57.6
BraA04t17993Z Brassica rapa HOM05D002385 ORTHO05D002245 9.2e-08 59.7 59 57.6
CARHR098150 Cardamine hirsuta HOM05D002385 ORTHO05D002245 9.2e-08 59.7 52 71.2
FAN14G3003 Fragaria x ananassa HOM05D002385 ORTHO05D002245 9.2e-08 59.7 48 70.8
FAN26G3044 Fragaria x ananassa HOM05D002385 ORTHO05D002245 9.2e-08 59.7 49 73.5
MD17G1127900 Malus domestica HOM05D002385 ORTHO05D002245 9.2e-08 59.7 70 58.6
Prupe.6G185200 Prunus persica HOM05D002385 ORTHO05D002245 9.2e-08 59.7 49 73.5
FvH4_6g39660 Fragaria vesca HOM05D002385 ORTHO05D002245 1.2e-07 59.3 49 73.5
Prupe.6G185400 Prunus persica HOM05D002385 ORTHO05D002245 1.2e-07 59.3 49 73.5
Potri.006G021600 Populus trichocarpa HOM05D002385 ORTHO05D002245 1.6e-07 58.9 67 50.7
Gohir.D07G190900 Gossypium hirsutum HOM05D002385 ORTHO05D002245 2.1e-07 58.5 67 61.2
Gorai.001G213300 Gossypium raimondii HOM05D002385 ORTHO05D002245 2.1e-07 58.5 67 61.2
Medtr4g091090 Medicago truncatula HOM05D002385 ORTHO05D002245 2.1e-07 58.5 70 52.9
Prupe.6G185500 Prunus persica HOM05D002385 ORTHO05D002245 2.1e-07 58.5 74 60.8
SGA_v2.0_scaffold181G39736 Striga asiatica HOM05D003210 ORTHO05D000001 2.1e-07 58.5 52 67.3
Actinidia11007 Actinidia chinensis HOM05D002385 ORTHO05D002245 2.7e-07 58.2 68 58.8
CANSAT64G2629 Cannabis sativa HOM05D002385 ORTHO05D002245 2.7e-07 58.2 56 60.7
DCAR_016934 Daucus carota HOM05D002385 ORTHO05D002245 2.7e-07 58.2 54 66.7
vmacro12336 Vaccinium macrocarpon HOM05D002385 ORTHO05D002245 2.7e-07 58.2 51 64.7
GSVIVG01015779001 Vitis vinifera HOM05D002385 ORTHO05D002245 2.7e-07 58.2 67 50.7
CSS0047514 Camellia sinensis var. sinensis HOM05D002385 ORTHO05D002245 3.5e-07 57.8 64 59.4
FvH4_6g39680 Fragaria vesca HOM05D002385 ORTHO05D002245 3.5e-07 57.8 48 70.8
FAN05G4252 Fragaria x ananassa HOM05D002385 ORTHO05D002245 3.5e-07 57.8 48 70.8
FAN14G2541 Fragaria x ananassa HOM05D002385 ORTHO05D002245 3.5e-07 57.8 48 70.8
Lj3g0003491 Lotus japonicus HOM05D002385 ORTHO05D002245 3.5e-07 57.8 64 59.4
THA.LOC104822278 Tarenaya hassleriana HOM05D002385 ORTHO05D002245 3.5e-07 57.8 59 57.6
BcaB06g28585 Brassica carinata HOM05D002385 ORTHO05D002245 4.6e-07 57.4 59 55.9
C04p61680 Brassica napus HOM05D002385 ORTHO05D002245 4.6e-07 57.4 59 55.9
CAN.G1202.1 Capsicum annuum HOM05D002385 ORTHO05D002245 4.6e-07 57.4 51 70.6
Ca_03673_v3 Cicer arietinum L. HOM05D002385 ORTHO05D002245 4.6e-07 57.4 53 62.3
Glyma.08G170900 Glycine max HOM05D002385 ORTHO05D002245 4.6e-07 57.4 61 60.7
Glyma.08G171400 Glycine max HOM05D002385 ORTHO05D002245 4.6e-07 57.4 61 54.1
Glyma.15G256300 Glycine max HOM05D002385 ORTHO05D002245 4.6e-07 57.4 63 54.0
Medtr2g069420 Medicago truncatula HOM05D002385 ORTHO05D002245 6.0e-07 57.0 56 62.5
Medtr2g069430 Medicago truncatula HOM05D002385 ORTHO05D002245 6.0e-07 57.0 69 55.1
Nn7g38131 Nelumbo nucifera HOM05D002385 ORTHO05D002245 6.0e-07 57.0 58 65.5
Nitab4.5_0003177g0010 Nicotiana tabacum HOM05D002385 ORTHO05D002245 6.0e-07 57.0 51 68.6
Solyc05g016060.4 Solanum lycopersicum HOM05D002385 ORTHO05D002245 6.0e-07 57.0 51 68.6
Sopen05g012340 Solanum pennellii HOM05D002385 ORTHO05D002245 6.0e-07 57.0 51 68.6
PGSC0003DMG400019578 Solanum tuberosum HOM05D002385 ORTHO05D002245 6.0e-07 57.0 51 68.6
TPR.G9734 Trifolium pratense HOM05D002385 ORTHO05D002245 6.0e-07 57.0 53 62.3
Aa31LG5G4320 Aethionema arabicum HOM05D002385 ORTHO05D002245 7.8e-07 56.6 65 52.3
C05p41120 Brassica napus HOM05D002385 ORTHO05D002245 7.8e-07 56.6 54 57.4
BolC5t32855H Brassica oleracea HOM05D002385 ORTHO05D002245 7.8e-07 56.6 54 57.4
Carub.0001s0465 Capsella rubella HOM05D002385 ORTHO05D002245 7.8e-07 56.6 56 57.1
ECA240G4719 Erigeron canadensis HOM05D002385 ORTHO05D002245 7.8e-07 56.6 62 62.9
Eucgr.A00899 Eucalyptus grandis HOM05D002385 ORTHO05D002245 7.8e-07 56.6 62 61.3
Cfa023568 Carpinus fangiana HOM05D002385 ORTHO05D002245 1.0e-06 56.2 64 59.4
FAN02G0915 Fragaria x ananassa HOM05D002385 ORTHO05D002245 1.0e-06 56.2 49 71.4
Glyma.08G170700 Glycine max HOM05D002385 ORTHO05D002245 1.0e-06 56.2 63 52.4
Oeu027273.1 Olea europaea HOM05D002385 ORTHO05D002245 1.0e-06 56.2 51 58.8
RcHm_v2.0_Chr2g0153751 Rosa chinensis HOM05D002385 ORTHO05D002245 1.0e-06 56.2 68 57.4
vmacro09249 Vaccinium macrocarpon HOM05D002385 ORTHO05D002245 1.0e-06 56.2 67 58.2
BcaC02g11342 Brassica carinata HOM05D002385 ORTHO05D002245 1.3e-06 55.8 59 57.6
C04p17420 Brassica napus HOM05D002385 ORTHO05D002245 1.3e-06 55.8 59 57.6
Cfa023028 Carpinus fangiana HOM05D002385 ORTHO05D002245 1.3e-06 55.8 67 61.2
Eucgr.A00900 Eucalyptus grandis HOM05D002385 ORTHO05D002245 1.3e-06 55.8 63 60.3
FAN14G0168 Fragaria x ananassa HOM05D002385 ORTHO05D002245 1.3e-06 55.8 50 56.0
TWI34G0572 Tripterygium wilfordii HOM05D002385 ORTHO05D002245 1.3e-06 55.8 61 65.6
TAR626G0681 Trochodendron aralioides HOM05D002385 ORTHO05D002245 1.3e-06 55.8 61 57.4
TAR627G0329 Trochodendron aralioides HOM05D002385 ORTHO05D002245 1.3e-06 55.8 49 71.4
ClCG09G022550 Citrullus lanatus HOM05D002385 ORTHO05D002245 1.7e-06 55.5 56 51.8
Haze_13600 Corylus avellana HOM05D002385 ORTHO05D002245 1.7e-06 55.5 57 64.9
THA.LOC109116124 Tarenaya hassleriana HOM05D002385 ORTHO05D002245 1.7e-06 55.5 69 53.6
Atru.chr11.2673 Acer truncatum HOM05D002385 ORTHO05D002245 2.3e-06 55.1 58 53.4
Gohir.A07G184100 Gossypium hirsutum HOM05D002385 ORTHO05D002245 2.3e-06 55.1 66 57.6
A01p32930 Brassica napus HOM05D002385 ORTHO05D002245 3.0e-06 54.7 58 67.2
BraA01t03414Z Brassica rapa HOM05D002385 ORTHO05D002245 3.0e-06 54.7 58 67.2
Cfa023571 Carpinus fangiana HOM05D002385 ORTHO05D002245 3.0e-06 54.7 56 66.1
Haze_13596 Corylus avellana HOM05D002385 ORTHO05D002245 3.0e-06 54.7 56 66.1
Dinv19617 Davidia involucrata HOM05D002385 ORTHO05D002245 3.0e-06 54.7 60 53.3
Glyma.15G256200 Glycine max HOM05D002385 ORTHO05D002245 3.0e-06 54.7 56 55.4
HanXRQChr11g0335361 Helianthus annuus HOM05D002385 ORTHO05D002245 3.0e-06 54.7 63 57.1
Medtr1g040735 Medicago truncatula HOM05D002385 ORTHO05D002245 3.0e-06 54.7 68 57.4
GSVIVG01015788001 Vitis vinifera HOM05D002385 ORTHO05D002245 3.0e-06 54.7 55 67.3
Manes.05G115500 Manihot esculenta HOM05D002385 ORTHO05D002245 3.9e-06 54.3 59 54.2
RcHm_v2.0_Chr2g0153691 Rosa chinensis HOM05D002385 ORTHO05D002245 3.9e-06 54.3 69 56.5
unitig_699.g19631 Utricularia gibba HOM05D002385 ORTHO05D002245 3.9e-06 54.3 64 59.4
Actinidia11006 Actinidia chinensis HOM05D002385 ORTHO05D002245 5.1e-06 53.9 74 55.4
BcaB02g10483 Brassica carinata HOM05D002385 ORTHO05D002245 5.1e-06 53.9 59 55.9
A05p12990 Brassica napus HOM05D002385 ORTHO05D002245 5.1e-06 53.9 59 55.9
BraA05t20239Z Brassica rapa HOM05D002385 ORTHO05D002245 5.1e-06 53.9 59 55.9
Haze_13594 Corylus avellana HOM05D002385 ORTHO05D002245 5.1e-06 53.9 59 62.7
Haze_13597 Corylus avellana HOM05D002385 ORTHO05D002245 5.1e-06 53.9 69 60.9
Glyma.15G256000 Glycine max HOM05D002385 ORTHO05D002245 5.1e-06 53.9 62 54.8
Oeu012375.1 Olea europaea HOM05D002385 ORTHO05D002245 5.1e-06 53.9 54 59.3
Peaxi162Scf00322g00010 Petunia axillaris HOM05D002385 ORTHO05D002245 5.1e-06 53.9 48 68.8
RcHm_v2.0_Chr2g0153711 Rosa chinensis HOM05D002385 ORTHO05D002245 5.1e-06 53.9 68 55.9
Sed0023256 Sechium edule HOM05D002385 ORTHO05D002245 5.1e-06 53.9 55 52.7
TPR.G9750 Trifolium pratense HOM05D002385 ORTHO05D002245 5.1e-06 53.9 51 58.8
CSS0045060 Camellia sinensis var. sinensis HOM05D002385 ORTHO05D002245 6.6e-06 53.5 66 57.6
Dinv18438 Davidia involucrata HOM05D002385 ORTHO05D002245 6.6e-06 53.5 82 48.8
Migut.M00099 Erythranthe guttata HOM05D002385 ORTHO05D002245 6.6e-06 53.5 67 56.7
MD01G1028400 Malus domestica HOM05D002385 ORTHO05D002245 6.6e-06 53.5 48 64.6
Phvul.005G057500 Phaseolus vulgaris HOM05D002385 ORTHO05D002245 6.6e-06 53.5 62 51.6
Rhsim06G0138200 Rhododendron simsii HOM05D002385 ORTHO05D002245 6.6e-06 53.5 66 59.1
Sp4g14570 Schrenkiella parvula HOM05D002385 ORTHO05D002245 6.6e-06 53.5 59 55.9
Sp4g14580 Schrenkiella parvula HOM05D002385 ORTHO05D002245 6.6e-06 53.5 59 55.9
Actinidia11100 Actinidia chinensis HOM05D003155 ORTHO05D002245 8.6e-06 53.1 71 53.5
Carub.0004s1351 Capsella rubella HOM05D002385 ORTHO05D002245 8.6e-06 53.1 60 55.0
Medtr1g040775 Medicago truncatula HOM05D002385 ORTHO05D002245 8.6e-06 53.1 68 54.4
Medtr5g042360 Medicago truncatula HOM05D002385 ORTHO05D002245 8.6e-06 53.1 68 54.4
QL04p073225 Quercus lobata HOM05D002385 ORTHO05D002245 8.6e-06 53.1 70 42.9


User provided reference genes

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