Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_22588_v3 Cicer arietinum L. HOM05D007247 ORTHO05D009208 8.3e-51 203.4 100 100.0
Medtr8g069350 Medicago truncatula HOM05D007247 ORTHO05D009208 5.8e-36 154.1 107 76.6
Psat4g115600 Pisum sativum HOM05D007247 ORTHO05D009208 1.4e-29 132.9 85 77.6
VMungo0251G0750 Vigna mungo HOM05D007247 ORTHO05D009208 1.9e-26 122.5 105 63.8
TPR.G17749 Trifolium pratense HOM05D007247 ORTHO05D009208 2.4e-26 122.1 101 68.3
Glyma.08G281800 Glycine max HOM05D007247 ORTHO05D009208 5.4e-26 120.9 113 62.8
Phvul.003G064700 Phaseolus vulgaris HOM05D007247 ORTHO05D009208 3.0e-24 115.2 107 60.7
Lj4g0020020 Lotus japonicus HOM05D007247 ORTHO05D009208 6.6e-24 114.0 102 61.8
Glyma.18G144900 Glycine max HOM05D007247 ORTHO05D009208 1.5e-23 112.8 112 61.6
Gohir.A03G134800 Gossypium hirsutum HOM05D007247 ORTHO05D009208 6.9e-21 104.0 100 58.0
Gohir.D02G158400 Gossypium hirsutum HOM05D007247 ORTHO05D009208 6.9e-21 104.0 100 58.0
Gorai.005G177800 Gossypium raimondii HOM05D007247 ORTHO05D009208 6.9e-21 104.0 100 58.0
TPR.G38802 Trifolium pratense HOM05D007247 ORTHO05D009208 1.2e-20 103.2 90 60.0
Medtr5g032790 Medicago truncatula HOM05D007247 ORTHO05D009208 5.8e-20 100.9 90 60.0
Psat2g084240 Pisum sativum HOM05D007247 ORTHO05D009208 7.6e-20 100.5 97 56.7
Duzib248G0486 Durio zibethinus HOM05D007247 ORTHO05D009208 1.7e-19 99.4 90 54.4
Duzib251G0560 Durio zibethinus HOM05D007247 ORTHO05D009208 1.7e-19 99.4 84 59.5
Thecc.02G261000 Theobroma cacao HOM05D007247 ORTHO05D009208 4.2e-18 94.7 80 58.8
Lalb_Chr09g0326081 Lupinus albus HOM05D007247 ORTHO05D009208 7.1e-18 94.0 81 60.5
QL03p057801 Quercus lobata HOM05D007247 ORTHO05D009208 2.3e-16 89.0 82 57.3
Sp1g23190 Schrenkiella parvula HOM05D007247 ORTHO05D009208 2.3e-16 89.0 77 59.7
Potri.008G186200 Populus trichocarpa HOM05D007247 ORTHO05D009208 3.0e-16 88.6 90 55.6
Dinv14726 Davidia involucrata HOM05D007247 ORTHO05D009208 3.9e-16 88.2 87 52.9
Thhalv10009220m.g Eutrema salsugineum HOM05D007247 ORTHO05D009208 5.1e-16 87.8 56 75.0
CARHR026490 Cardamine hirsuta HOM05D007247 ORTHO05D009208 6.7e-16 87.4 45 86.7
COL.COLO4_04829 Corchorus olitorius HOM05D007247 ORTHO05D009208 6.7e-16 87.4 85 55.3
MSTRG.13349 Avicennia marina HOM05D007247 ORTHO05D009208 8.7e-16 87.0 93 48.4
A08p26670 Brassica napus HOM05D007247 ORTHO05D009208 1.1e-15 86.7 62 66.1
C03p73320 Brassica napus HOM05D007247 ORTHO05D009208 1.5e-15 86.3 46 82.6
BraA08t34615Z Brassica rapa HOM05D007247 ORTHO05D009208 1.5e-15 86.3 52 75.0
Hma1.2p1_0079F.1_g041000 Hydrangea macrophylla HOM05D007247 ORTHO05D009208 1.9e-15 85.9 90 54.4
AL2G26710 Arabidopsis lyrata HOM05D007247 ORTHO05D009208 2.5e-15 85.5 64 68.8
Oeu001697.1 Olea europaea HOM05D007247 ORTHO05D009208 2.5e-15 85.5 86 55.8
Potri.010G046700 Populus trichocarpa HOM05D007247 ORTHO05D009208 2.5e-15 85.5 90 52.2
Sabra10G0021600 Salix brachista HOM05D007247 ORTHO05D009208 3.3e-15 85.1 90 52.2
BcaB03g12051 Brassica carinata HOM05D007247 ORTHO05D009208 4.3e-15 84.7 62 66.1
CiPaw.06G067400 Carya illinoinensis HOM05D007247 ORTHO05D009208 4.3e-15 84.7 79 57.0
Aa31sc790G10 Aethionema arabicum HOM05D007247 ORTHO05D009208 5.6e-15 84.3 80 52.5
Carub.0002s1440 Capsella rubella HOM05D007247 ORTHO05D009208 9.6e-15 83.6 75 57.3
Prupe.1G245600 Prunus persica HOM05D007247 ORTHO05D009208 9.6e-15 83.6 89 56.2
BcaC01g01656 Brassica carinata HOM05D007247 ORTHO05D009208 1.3e-14 83.2 46 80.4
BolC3t19629H Brassica oleracea HOM05D007247 ORTHO05D009208 1.3e-14 83.2 46 80.4
DCAR_026511 Daucus carota HOM05D007247 ORTHO05D009208 1.6e-14 82.8 99 48.5
Eucgr.H02494 Eucalyptus grandis HOM05D007247 ORTHO05D009208 1.6e-14 82.8 85 51.8
AT1G67910 Arabidopsis thaliana HOM05D007247 ORTHO05D009208 2.1e-14 82.4 48 77.1
Cfa009218 Carpinus fangiana HOM05D007247 ORTHO05D009208 2.1e-14 82.4 76 56.6
MD16G1101300 Malus domestica HOM05D007247 ORTHO05D009208 2.8e-14 82.0 80 58.8
Carub.0001s2551 Capsella rubella HOM05D007247 ORTHO05D009208 3.7e-14 81.6 42 83.3
Haze_12254 Corylus avellana HOM05D007247 ORTHO05D009208 3.7e-14 81.6 76 56.6
Lj6E813T0 Lonicera japonica HOM05D007247 ORTHO05D009208 3.7e-14 81.6 79 55.7
BcaB03g15384 Brassica carinata HOM05D007247 ORTHO05D009208 4.8e-14 81.3 88 54.5
BcaC08g46018 Brassica carinata HOM05D007247 ORTHO05D009208 4.8e-14 81.3 48 75.0
A07p32290 Brassica napus HOM05D007247 ORTHO05D009208 4.8e-14 81.3 48 75.0
C06p38130 Brassica napus HOM05D007247 ORTHO05D009208 4.8e-14 81.3 48 75.0
BolC6t38910H Brassica oleracea HOM05D007247 ORTHO05D009208 4.8e-14 81.3 48 75.0
BraA07t30854Z Brassica rapa HOM05D007247 ORTHO05D009208 4.8e-14 81.3 48 75.0
AL1G40330 Arabidopsis lyrata HOM05D007247 ORTHO05D009208 6.2e-14 80.9 42 83.3
MD13G1100900 Malus domestica HOM05D007247 ORTHO05D009208 6.2e-14 80.9 80 56.2
CANSAT01G0364 Cannabis sativa HOM05D007247 ORTHO05D009208 8.1e-14 80.5 78 55.1
GSVIVG01005747001 Vitis vinifera HOM05D000233 ORTHO05D000020 1.1e-13 80.1 85 52.9
Cfa009217 Carpinus fangiana HOM05D007247 ORTHO05D009208 1.8e-13 79.3 94 47.9
Actinidia01350 Actinidia chinensis HOM05D000233 ORTHO05D000020 2.4e-13 79.0 80 57.5
Actinidia08135 Actinidia chinensis HOM05D007247 ORTHO05D009208 2.4e-13 79.0 92 55.4
HanXRQChr12g0385811 Helianthus annuus HOM05D007247 ORTHO05D009208 3.1e-13 78.6 54 66.7
Manes.12G022500 Manihot esculenta HOM05D007247 ORTHO05D009208 4.0e-13 78.2 91 49.5
Dinv15222 Davidia involucrata HOM05D007247 ORTHO05D009208 6.9e-13 77.4 97 48.5
Oeu057538.1 Olea europaea HOM05D007247 ORTHO05D009208 6.9e-13 77.4 81 51.9
AT1G24577 Arabidopsis thaliana HOM05D007247 ORTHO05D009208 1.2e-12 76.6 42 78.6
CiPaw.05G181400 Carya illinoinensis HOM05D007247 ORTHO05D009208 1.2e-12 76.6 80 51.2
Atru.chr11.2143 Acer truncatum HOM05D007247 ORTHO05D009208 1.5e-12 76.3 49 71.4
Ciclev10033189m.g Citrus clementina HOM05D007247 ORTHO05D009208 1.5e-12 76.3 83 53.0
Lsat_1_v5_gn_4_4161 Lactuca sativa HOM05D007247 ORTHO05D009208 1.5e-12 76.3 51 72.5
THA.LOC104825564 Tarenaya hassleriana HOM05D007247 ORTHO05D009208 1.5e-12 76.3 101 48.5
Peaxi162Scf00128g00216 Petunia axillaris HOM05D007247 ORTHO05D009208 2.0e-12 75.9 95 48.4
Solyc05g013560.3 Solanum lycopersicum HOM05D007247 ORTHO05D009208 3.4e-12 75.1 84 52.4
Aqoxy5G03750 Aquilegia oxysepala HOM05D007247 ORTHO05D009208 5.8e-12 74.3 80 52.5
TAR636G3342 Trochodendron aralioides HOM05D007247 ORTHO05D009208 7.6e-12 73.9 75 53.3
Actinidia15099 Actinidia chinensis HOM05D000233 ORTHO05D000020 1.3e-11 73.2 89 48.3
Migut.E00205 Erythranthe guttata HOM05D000233 ORTHO05D000020 1.3e-11 73.2 47 72.3
Sopen05g008460 Solanum pennellii HOM05D007247 ORTHO05D009208 1.3e-11 73.2 84 51.2
unitig_8.g3935 Utricularia gibba HOM05D007247 ORTHO05D009208 1.7e-11 72.8 44 75.0
HanXRQChr17g0569581 Helianthus annuus HOM05D007247 ORTHO05D009208 2.2e-11 72.4 46 76.1
Aqoxy3G01230 Aquilegia oxysepala HOM05D007247 ORTHO05D009208 1.4e-10 69.7 40 77.5
Nn4g22599 Nelumbo nucifera HOM05D007247 ORTHO05D009208 1.4e-10 69.7 61 59.0
TAR622G0973 Trochodendron aralioides HOM05D007247 ORTHO05D009208 1.4e-10 69.7 40 77.5
TAR636G3092 Trochodendron aralioides HOM05D007247 ORTHO05D009208 1.4e-10 69.7 75 52.0
SalBow8G0600 Salvia bowleyana HOM05D007247 ORTHO05D009208 2.5e-10 68.9 86 44.2
CSS0032991 Camellia sinensis var. sinensis HOM05D007247 ORTHO05D009208 7.1e-10 67.4 50 68.0
CSS0043579 Camellia sinensis var. sinensis HOM05D007247 ORTHO05D009208 7.1e-10 67.4 50 68.0
Rhsim12G0040300 Rhododendron simsii HOM05D007247 ORTHO05D009208 7.1e-10 67.4 50 68.0
Sc04g0009510 Simmondsia chinensis HOM05D007247 ORTHO05D009208 7.1e-10 67.4 83 49.4
EL10Ac6g13820 Beta vulgaris HOM05D007247 ORTHO05D009208 1.6e-09 66.2 50 62.0
ECA234G3809 Erigeron canadensis HOM05D007247 ORTHO05D009208 1.6e-09 66.2 53 67.9
AUR62005467 Chenopodium quinoa HOM05D007247 ORTHO05D009208 2.7e-09 65.5 45 68.9
AUR62024275 Chenopodium quinoa HOM05D007247 ORTHO05D009208 3.5e-09 65.1 57 56.1
Manes.13G023600 Manihot esculenta HOM05D007247 ORTHO05D009208 3.5e-09 65.1 99 42.4
FAN22G0007 Fragaria x ananassa HOM05D007247 ORTHO05D009208 4.6e-09 64.7 84 44.0
FAN22G1782 Fragaria x ananassa HOM05D007247 ORTHO05D009208 4.6e-09 64.7 84 44.0
FAN07G0181 Fragaria x ananassa HOM05D007247 ORTHO05D009208 7.9e-09 63.9 87 42.5
FvH4_4g25640 Fragaria vesca HOM05D007247 ORTHO05D009208 1.0e-08 63.5 93 40.9
FAN17G2797 Fragaria x ananassa HOM05D007247 ORTHO05D009208 1.0e-08 63.5 93 40.9
RcHm_v2.0_Chr4g0433081 Rosa chinensis HOM05D007247 ORTHO05D009208 1.3e-08 63.2 84 45.2
FAN12G2765 Fragaria x ananassa HOM05D007247 ORTHO05D009208 1.8e-08 62.8 93 40.9
Lsat_1_v5_gn_9_89061 Lactuca sativa HOM05D007247 ORTHO05D009208 1.1e-07 60.1 67 47.8
DCAR_024425 Daucus carota HOM05D000669 ORTHO05D000679 1.9e-07 59.3 76 44.7
unitig_22.g5530 Utricularia gibba HOM05D007247 ORTHO05D009208 1.9e-07 59.3 82 43.9
ATR0824G192 Amborella trichopoda HOM05D007247 ORTHO05D009208 7.4e-07 57.4 80 47.5
PSO063G6114 Papaver somniferum HOM05D007247 ORTHO05D009208 9.6e-07 57.0 61 50.8
TAR629G1528 Trochodendron aralioides HOM05D007247 ORTHO05D009208 9.6e-07 57.0 38 71.1
BolC5t34141H Brassica oleracea HOM05D006736 ORTHO05D008459 1.3e-06 56.6 67 44.8
Carub.0003s1260 Capsella rubella HOM05D006736 ORTHO05D008459 1.3e-06 56.6 61 45.9
HanXRQChr03g0080371 Helianthus annuus HOM05D007247 ORTHO05D009208 1.3e-06 56.6 36 69.4
PSO754G0004 Papaver somniferum HOM05D007247 ORTHO05D009208 1.3e-06 56.6 61 50.8
Manes.06G043600 Manihot esculenta HOM05D001268 ORTHO05D001577 1.6e-06 56.2 51 45.1
Thhalv10021795m.g Eutrema salsugineum HOM05D006736 ORTHO05D008459 2.1e-06 55.8 64 42.2
Manes.01G003400 Manihot esculenta HOM05D006736 ORTHO05D008459 2.1e-06 55.8 55 50.9
Rhsim06G0178800 Rhododendron simsii HOM05D006736 ORTHO05D008459 2.1e-06 55.8 38 60.5
BcaC05g29199 Brassica carinata HOM05D006736 ORTHO05D008459 2.8e-06 55.5 67 43.3
CSS0009961 Camellia sinensis var. sinensis HOM05D008067 ORTHO05D010226 2.8e-06 55.5 62 46.8
CSS0037112 Camellia sinensis var. sinensis HOM05D008067 ORTHO05D010226 2.8e-06 55.5 62 46.8
LjContig00081g0022969 Lotus japonicus HOM05D006736 ORTHO05D008459 3.7e-06 55.1 73 39.7
GSVIVG01014741001 Vitis vinifera HOM05D006736 ORTHO05D008459 3.7e-06 55.1 56 50.0
Ah.06g181490 Amaranthus hybridus HOM05D006736 ORTHO05D008459 4.8e-06 54.7 45 57.8
EL10Ac4g07540 Beta vulgaris HOM05D006736 ORTHO05D008459 6.2e-06 54.3 45 55.6
CsaV3_1G030530 Cucumis sativus L. HOM05D008067 ORTHO05D010226 6.2e-06 54.3 59 47.5
Sed0018286 Sechium edule HOM05D008067 ORTHO05D010226 6.2e-06 54.3 42 57.1
TAR624G0983 Trochodendron aralioides HOM05D006736 ORTHO05D008459 6.2e-06 54.3 67 40.3
Eucgr.F02027 Eucalyptus grandis HOM05D006736 ORTHO05D008459 8.2e-06 53.9 61 47.5
Solyc07g045200.1 Solanum lycopersicum HOM05D006736 ORTHO05D008459 8.2e-06 53.9 32 71.9


User provided reference genes

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