Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_22537_v3 Cicer arietinum L. HOM05D002764 ORTHO05D002960 1.2e-42 176.0 87 100.0
Medtr8g070640 Medicago truncatula HOM05D002764 ORTHO05D002960 1.1e-30 136.3 96 74.0
Psat4g112480 Pisum sativum HOM05D002764 ORTHO05D002960 2.4e-30 135.2 96 74.0
Glyma.08G264402 Glycine max HOM05D002764 ORTHO05D002960 3.2e-30 134.8 96 71.9
Glyma.16G094500 Glycine max HOM05D002764 ORTHO05D002960 3.2e-30 134.8 96 71.9
TPR.G19832 Trifolium pratense HOM05D002764 ORTHO05D002960 9.2e-30 133.3 96 72.9
Lj4g0007006 Lotus japonicus HOM05D002764 ORTHO05D002960 1.2e-29 132.9 96 71.9
VMungo0251G1067 Vigna mungo HOM05D002764 ORTHO05D002960 3.5e-29 131.3 96 71.9
Phvul.003G274500 Phaseolus vulgaris HOM05D002764 ORTHO05D002960 1.7e-28 129.0 96 69.8
Lalb_Chr16g0391871 Lupinus albus HOM05D002764 ORTHO05D002960 1.5e-27 125.9 96 68.8
arahy.Tifrunner.gnm1.ann1.MDM23I Arachis hypogaea HOM05D002764 ORTHO05D002960 3.3e-27 124.8 95 68.4
arahy.Tifrunner.gnm1.ann1.VK0W6N Arachis hypogaea HOM05D002764 ORTHO05D002960 3.3e-27 124.8 95 68.4
Ciclev10015913m.g Citrus clementina HOM05D002764 ORTHO05D002960 1.1e-25 119.8 96 64.6
Gohir.D12G049400 Gossypium hirsutum HOM05D002764 ORTHO05D002960 1.4e-25 119.4 96 64.6
Gorai.008G052300 Gossypium raimondii HOM05D002764 ORTHO05D002960 1.4e-25 119.4 96 64.6
COL.COLO4_25012 Corchorus olitorius HOM05D002764 ORTHO05D002960 1.8e-25 119.0 96 64.6
Gohir.A12G051200 Gossypium hirsutum HOM05D002764 ORTHO05D002960 3.1e-25 118.2 96 63.5
RcHm_v2.0_Chr5g0022461 Rosa chinensis HOM05D002764 ORTHO05D002960 2.0e-24 115.5 68 79.4
Sabra01G0051700 Salix brachista HOM05D002764 ORTHO05D002960 2.0e-24 115.5 97 59.8
CsaV3_6G053200 Cucumis sativus L. HOM05D002764 ORTHO05D002960 5.8e-24 114.0 68 77.9
Prupe.4G123300 Prunus persica HOM05D002764 ORTHO05D002960 5.8e-24 114.0 68 77.9
Thecc.02G000300 Theobroma cacao HOM05D002764 ORTHO05D002960 5.8e-24 114.0 68 77.9
vmacro03577 Vaccinium macrocarpon HOM05D002764 ORTHO05D002960 7.5e-24 113.6 96 59.4
Duzib248G0661 Durio zibethinus HOM05D002764 ORTHO05D002960 9.9e-24 113.2 68 77.9
ClCG01G025980 Citrullus lanatus HOM05D002764 ORTHO05D002960 1.7e-23 112.5 67 77.6
MD10G1221300 Malus domestica HOM05D002764 ORTHO05D002960 1.7e-23 112.5 68 76.5
MELO3C006994.2 Cucumis melo HOM05D002764 ORTHO05D002960 3.7e-23 111.3 67 77.6
TAR627G0266 Trochodendron aralioides HOM05D002764 ORTHO05D002960 3.7e-23 111.3 96 58.3
CSS0002485 Camellia sinensis var. sinensis HOM05D002764 ORTHO05D002960 4.9e-23 110.9 68 76.5
Dinv05281 Davidia involucrata HOM05D002764 ORTHO05D002960 4.9e-23 110.9 96 59.4
Rhsim13G0136800 Rhododendron simsii HOM05D002764 ORTHO05D002960 6.4e-23 110.5 96 56.2
TWI15G1089 Tripterygium wilfordii HOM05D002764 ORTHO05D002960 8.3e-23 110.2 67 77.6
FAN16G2462 Fragaria x ananassa HOM05D002764 ORTHO05D002960 1.1e-22 109.8 68 75.0
FAN25G1120 Fragaria x ananassa HOM05D002764 ORTHO05D002960 1.1e-22 109.8 68 75.0
Hma1.2p1_0082F.1_g042610 Hydrangea macrophylla HOM05D002764 ORTHO05D002960 1.4e-22 109.4 96 59.4
Sed0003310 Sechium edule HOM05D002764 ORTHO05D002960 1.4e-22 109.4 73 74.0
Sc25g0004730 Simmondsia chinensis HOM05D002764 ORTHO05D002960 1.4e-22 109.4 96 58.3
Potri.003G157700 Populus trichocarpa HOM05D002764 ORTHO05D002960 1.9e-22 109.0 96 57.3
Cfa001171 Carpinus fangiana HOM05D002764 ORTHO05D002960 2.4e-22 108.6 68 75.0
CiPaw.09G141200 Carya illinoinensis HOM05D002764 ORTHO05D002960 2.4e-22 108.6 68 75.0
Haze_05179 Corylus avellana HOM05D002764 ORTHO05D002960 2.4e-22 108.6 68 75.0
Eucgr.E04332 Eucalyptus grandis HOM05D002764 ORTHO05D002960 2.4e-22 108.6 96 58.3
FAN11G2045 Fragaria x ananassa HOM05D002764 ORTHO05D002960 2.4e-22 108.6 68 73.5
FAN21G1338 Fragaria x ananassa HOM05D002764 ORTHO05D002960 2.4e-22 108.6 68 73.5
Manes.16G060600 Manihot esculenta HOM05D002764 ORTHO05D002960 2.4e-22 108.6 95 60.0
FvH4_3g13510 Fragaria vesca HOM05D002764 ORTHO05D002960 3.2e-22 108.2 68 73.5
TWI38G0493 Tripterygium wilfordii HOM05D002764 ORTHO05D002960 3.2e-22 108.2 67 74.6
Cpa.g.sc30.58 Carica papaya HOM05D002764 ORTHO05D002960 9.2e-22 106.7 67 73.1
ECA232G3093 Erigeron canadensis HOM05D000029 ORTHO05D000001 2.1e-21 105.5 68 72.1
Lsat_1_v5_gn_8_107580 Lactuca sativa HOM05D002764 ORTHO05D002960 2.1e-21 105.5 68 73.5
Potri.001G073300 Populus trichocarpa HOM05D002764 ORTHO05D002960 2.1e-21 105.5 95 56.8
QL11p010611 Quercus lobata HOM05D002764 ORTHO05D002960 2.1e-21 105.5 67 73.1
Sabra03G0114300 Salix brachista HOM05D002764 ORTHO05D002960 2.1e-21 105.5 67 73.1
Hund21012 Selenicereus undatus HOM05D002764 ORTHO05D002960 2.1e-21 105.5 96 55.2
Nitab4.5_0004266g0020 Nicotiana tabacum HOM05D002764 ORTHO05D002960 2.7e-21 105.1 97 54.6
GSVIVG01011697001 Vitis vinifera HOM05D002764 ORTHO05D002960 2.7e-21 105.1 96 57.3
EL10Ac6g13754 Beta vulgaris HOM05D002764 ORTHO05D002960 3.5e-21 104.8 96 56.2
Peaxi162Scf00040g00214 Petunia axillaris HOM05D002764 ORTHO05D002960 3.5e-21 104.8 97 55.7
Ah.03g132240 Amaranthus hybridus HOM05D002764 ORTHO05D002960 4.6e-21 104.4 99 54.5
CANSAT35G1062 Cannabis sativa HOM05D002764 ORTHO05D002960 4.6e-21 104.4 68 70.6
HanXRQChr09g0257691 Helianthus annuus HOM05D002764 ORTHO05D002960 4.6e-21 104.4 68 70.6
CDE10G0875 Ceratophyllum demersum HOM05D002764 ORTHO05D002960 6.0e-21 104.0 95 52.6
Solyc11g068610.2 Solanum lycopersicum HOM05D002764 ORTHO05D002960 7.8e-21 103.6 97 53.6
Sopen11g027330 Solanum pennellii HOM05D002764 ORTHO05D002960 7.8e-21 103.6 97 53.6
MSTRG.28023 Avicennia marina HOM05D002764 ORTHO05D002960 1.0e-20 103.2 68 67.6
Migut.N01903 Erythranthe guttata HOM05D002764 ORTHO05D002960 1.3e-20 102.8 69 68.1
Lj2A340G20 Lonicera japonica HOM05D002764 ORTHO05D002960 1.7e-20 102.4 96 56.2
PGSC0003DMG400026351 Solanum tuberosum HOM05D002764 ORTHO05D002960 1.7e-20 102.4 97 53.6
DCAR_007770 Daucus carota HOM05D002764 ORTHO05D002960 3.0e-20 101.7 96 51.0
Oeu021869.2 Olea europaea HOM05D002764 ORTHO05D002960 3.9e-20 101.3 73 64.4
Nitab4.5_0006120g0020 Nicotiana tabacum HOM05D002764 ORTHO05D002960 5.1e-20 100.9 99 53.5
PGR042G3469 Punica granatum HOM05D002764 ORTHO05D002960 1.1e-19 99.8 67 71.6
AUR62007725 Chenopodium quinoa HOM05D002764 ORTHO05D002960 1.5e-19 99.4 96 55.2
SalBow4G2049 Salvia bowleyana HOM05D002764 ORTHO05D002960 1.5e-19 99.4 76 63.2
SalBow4G2392 Salvia bowleyana HOM05D002764 ORTHO05D002960 1.5e-19 99.4 76 63.2
ATR0721G170 Amborella trichopoda HOM05D002764 ORTHO05D002960 1.9e-19 99.0 95 49.5
CAN.G745.4 Capsicum annuum HOM05D002764 ORTHO05D002960 1.9e-19 99.0 97 51.5
THA.LOC104798576 Tarenaya hassleriana HOM05D002764 ORTHO05D002960 2.5e-19 98.6 67 67.2
Zm00001eb116800 Zea mays HOM05D002764 ORTHO05D002960 2.5e-19 98.6 96 52.1
THA.LOC104814331 Tarenaya hassleriana HOM05D002764 ORTHO05D002960 3.3e-19 98.2 96 54.2
PSO063G4440 Papaver somniferum HOM05D002764 ORTHO05D002960 5.6e-19 97.4 96 51.0
HPP92_005201 Vanilla planifolia HOM05D002764 ORTHO05D002960 5.6e-19 97.4 96 50.0
ATR0737G018 Amborella trichopoda HOM05D002764 ORTHO05D002960 7.3e-19 97.1 95 49.5
Cc09_g04490 Coffea canephora HOM05D002764 ORTHO05D002960 7.3e-19 97.1 68 67.6
CDE10G1113 Ceratophyllum demersum HOM05D002764 ORTHO05D002960 9.5e-19 96.7 66 63.6
PSO782G1036 Papaver somniferum HOM05D002764 ORTHO05D002960 1.2e-18 96.3 96 51.0
unitig_749.g13551 Utricularia gibba HOM05D005149 ORTHO05D006251 1.2e-18 96.3 67 68.7
SGA_v2.0_scaffold263G46025 Striga asiatica HOM05D002764 ORTHO05D002960 1.6e-18 95.9 68 66.2
Aa31LG6G12060 Aethionema arabicum HOM05D002764 ORTHO05D002960 2.1e-18 95.5 67 67.2
Aqoxy2G00386 Aquilegia oxysepala HOM05D002764 ORTHO05D002960 2.1e-18 95.5 93 51.6
AL1G45080 Arabidopsis lyrata HOM05D002764 ORTHO05D002960 2.1e-18 95.5 92 53.3
AT1G30825 Arabidopsis thaliana HOM05D002764 ORTHO05D002960 2.1e-18 95.5 92 53.3
Carub.0001s2914 Capsella rubella HOM05D002764 ORTHO05D002960 2.1e-18 95.5 92 53.3
AUR62026563 Chenopodium quinoa HOM05D002764 ORTHO05D002960 2.8e-18 95.1 96 52.1
CARHR030300 Cardamine hirsuta HOM05D002764 ORTHO05D002960 3.6e-18 94.7 92 53.3
Nn1g09845 Nelumbo nucifera HOM05D002764 ORTHO05D002960 4.7e-18 94.4 66 65.2
Sp1g26720 Schrenkiella parvula HOM05D002764 ORTHO05D002960 1.1e-17 93.2 96 52.1
BcaB03g13812 Brassica carinata HOM05D002764 ORTHO05D002960 2.4e-17 92.0 96 52.1
BcaB07g32735 Brassica carinata HOM05D002764 ORTHO05D002960 3.1e-17 91.7 96 51.0
A07p09600 Brassica napus HOM05D002764 ORTHO05D002960 3.1e-17 91.7 96 52.1
C07p14780 Brassica napus HOM05D002764 ORTHO05D002960 3.1e-17 91.7 96 52.1
BolC7t41980H Brassica oleracea HOM05D002764 ORTHO05D002960 3.1e-17 91.7 96 52.1
BraA07t28755Z Brassica rapa HOM05D002764 ORTHO05D002960 3.1e-17 91.7 96 52.1
SEGI_18231 Sequoiadendron giganteum HOM05D002764 ORTHO05D002960 3.1e-17 91.7 96 45.8
Thhalv10008211m.g Eutrema salsugineum HOM05D002764 ORTHO05D002960 6.8e-17 90.5 96 50.0
BcaC05g27107 Brassica carinata HOM05D002764 ORTHO05D002960 8.9e-17 90.1 96 50.0
A09p35450 Brassica napus HOM05D002764 ORTHO05D002960 8.9e-17 90.1 96 50.0
C05p29900 Brassica napus HOM05D002764 ORTHO05D002960 8.9e-17 90.1 96 50.0
BolC5t31722H Brassica oleracea HOM05D002764 ORTHO05D002960 8.9e-17 90.1 96 50.0
BraA09t39073Z Brassica rapa HOM05D002764 ORTHO05D002960 8.9e-17 90.1 96 50.0
Pp3c14_19930 Physcomitrium patens HOM05D002764 ORTHO05D002960 8.9e-17 90.1 95 49.5
SHI16745 Sapria himalayana HOM05D002764 ORTHO05D002960 1.5e-16 89.4 68 58.8
arahy.Tifrunner.gnm1.ann1.BR68XX Arachis hypogaea HOM05D002764 ORTHO05D002960 2.2e-15 85.5 94 51.1
SMO118G0168 Selaginella moellendorffii HOM05D002764 ORTHO05D002960 4.9e-15 84.3 95 43.2
AagrBONN_evm.TU.Sc2ySwM_362.1937 Anthoceros agrestis HOM05D002764 ORTHO05D002960 3.2e-14 81.6 95 41.1
arahy.Tifrunner.gnm1.ann1.25YVJA Arachis hypogaea HOM05D002764 ORTHO05D002960 5.4e-14 80.9 75 58.7
arahy.Tifrunner.gnm1.ann1.EUP4KI Arachis hypogaea HOM05D002764 ORTHO05D002960 9.2e-14 80.1 46 82.6
arahy.Tifrunner.gnm1.ann1.P96IG1 Arachis hypogaea HOM05D002764 ORTHO05D002960 2.1e-13 79.0 75 56.0
AagrBONN_evm.TU.Sc2ySwM_344.4310 Anthoceros agrestis HOM05D002764 ORTHO05D002960 2.7e-13 78.6 95 40.0
Pp3c1_32330 Physcomitrium patens HOM05D002764 ORTHO05D002960 4.6e-13 77.8 95 38.9
DCAR_004367 Daucus carota HOM05D002764 ORTHO05D002960 7.8e-13 77.0 95 43.2
Mapoly0019s0138 Marchantia polymorpha HOM05D002764 ORTHO05D002960 1.0e-12 76.6 95 41.1
SEGI_02118 Sequoiadendron giganteum HOM05D002764 ORTHO05D002960 3.3e-11 71.6 66 47.0
Lsat_1_v5_gn_1_75260 Lactuca sativa HOM05D002764 ORTHO05D002960 5.8e-08 60.8 69 42.0
CBR_g9158 Chara braunii HOM05D002764 ORTHO05D002960 1.7e-07 59.3 68 36.8
ATR0736G098 Amborella trichopoda HOM05D002764 ORTHO05D002960 1.1e-06 56.6 65 41.5
PGR044G0165 Punica granatum HOM05D002764 ORTHO05D002960 2.4e-06 55.5 72 36.1
CiPaw.01G179300 Carya illinoinensis HOM05D002764 ORTHO05D002960 7.1e-06 53.9 70 37.1
QL06p020725 Quercus lobata HOM05D002764 ORTHO05D002960 9.3e-06 53.5 70 35.7
TAR362G0649 Trochodendron aralioides HOM05D002764 ORTHO05D002960 9.3e-06 53.5 66 34.8


User provided reference genes

Program Settings