Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_22522_v3 Cicer arietinum L. HOM05D002444 ORTHO05D009235 1.3e-96 357.8 265 100.0
Psat4g114600 Pisum sativum HOM05D002444 ORTHO05D009235 1.3e-67 261.5 266 75.9
Phvul.003G282300 Phaseolus vulgaris HOM05D002444 ORTHO05D009235 1.4e-53 214.9 250 64.8
CANSAT01G1305 Cannabis sativa HOM05D002444 ORTHO05D009235 6.8e-37 159.5 244 60.2
Glyma.08G268300 Glycine max HOM05D002444 ORTHO05D009235 6.8e-37 159.5 238 66.4
Duzib151G0185 Durio zibethinus HOM05D002444 ORTHO05D009235 2.2e-35 154.5 265 56.6
Thecc.04G296100 Theobroma cacao HOM05D002444 ORTHO05D009235 6.3e-35 152.9 141 50.4
TPR.G24811 Trifolium pratense HOM05D002444 ORTHO05D009235 8.3e-35 152.5 199 76.9
Hma1.2p1_0078F.1_g040150 Hydrangea macrophylla HOM05D002444 ORTHO05D009235 9.1e-34 149.1 265 56.2
VMungo0251G0274 Vigna mungo HOM05D002444 ORTHO05D009235 1.2e-33 148.7 230 66.5
Potri.008G108300 Populus trichocarpa HOM05D002444 ORTHO05D009235 2.0e-33 147.9 264 56.8
CSS0000232 Camellia sinensis var. sinensis HOM05D002444 ORTHO05D009235 2.5e-31 141.0 129 48.1
C01p47300 Brassica napus HOM05D002444 ORTHO05D009235 4.2e-31 140.2 241 45.6
BolC1t04700H Brassica oleracea HOM05D002444 ORTHO05D009235 4.2e-31 140.2 241 45.6
Sabra08G0082100 Salix brachista HOM05D002444 ORTHO05D009235 4.2e-31 140.2 264 56.8
A01p37370 Brassica napus HOM05D002444 ORTHO05D009235 5.5e-31 139.8 241 45.6
BraA01t03795Z Brassica rapa HOM05D002444 ORTHO05D009235 5.5e-31 139.8 241 45.6
Haze_01077 Corylus avellana HOM05D002444 ORTHO05D009235 1.6e-30 138.3 245 63.3
Sc13g0006330 Simmondsia chinensis HOM05D002444 ORTHO05D009235 1.4e-29 135.2 143 44.8
Oeu019954.2 Olea europaea HOM05D002444 ORTHO05D009235 1.8e-29 134.8 144 43.8
THA.LOC104821798 Tarenaya hassleriana HOM05D002444 ORTHO05D009235 6.8e-29 132.9 240 61.2
MBI06_g47128_MAGBIO Magnolia biondii HOM05D002444 ORTHO05D009235 2.0e-28 131.3 261 55.6
BcaC09g48647 Brassica carinata HOM05D002444 ORTHO05D009235 5.7e-28 129.8 245 44.5
MSTRG.3868 Avicennia marina HOM05D002444 ORTHO05D009235 9.8e-28 129.0 262 58.4
QL02p088731 Quercus lobata HOM05D002444 ORTHO05D009235 2.4e-26 124.4 240 62.1
FvH4_5g29230 Fragaria vesca HOM05D002444 ORTHO05D009235 7.0e-26 122.9 242 58.3
Gohir.D02G117100 Gossypium hirsutum HOM05D002444 ORTHO05D009235 4.5e-25 120.2 217 52.5
FAN18G1273 Fragaria x ananassa HOM05D002444 ORTHO05D009235 5.9e-25 119.8 239 58.6
Carub.0003s1662 Capsella rubella HOM05D002444 ORTHO05D009235 7.7e-25 119.4 146 40.4
AL3G29860 Arabidopsis lyrata HOM05D002444 ORTHO05D009235 1.7e-24 118.2 128 46.1
Medtr8g070060 Medicago truncatula HOM05D002444 ORTHO05D009235 1.7e-24 118.2 179 74.9
MD00G1073300 Malus domestica HOM05D002444 ORTHO05D009235 2.3e-24 117.9 230 63.9
Aa31LG8G3960 Aethionema arabicum HOM05D002444 ORTHO05D009235 5.0e-24 116.7 261 52.5
RcHm_v2.0_Chr7g0221991 Rosa chinensis HOM05D002444 ORTHO05D009235 5.0e-24 116.7 228 60.5
Cpa.g.sc9.92 Carica papaya HOM05D002444 ORTHO05D009235 1.5e-23 115.2 194 67.0
Prupe.1G002300 Prunus persica HOM05D002444 ORTHO05D009235 2.5e-23 114.4 227 63.9
SalBow8G2135 Salvia bowleyana HOM05D002444 ORTHO05D009235 2.5e-23 114.4 122 43.4
Sp3g15130 Schrenkiella parvula HOM05D002444 ORTHO05D009235 4.3e-23 113.6 125 47.2
CARHR092170 Cardamine hirsuta HOM05D002444 ORTHO05D009235 5.6e-23 113.2 126 47.6
AUR62042953 Chenopodium quinoa HOM05D002444 ORTHO05D009235 5.6e-23 113.2 224 57.1
Thhalv10022362m.g Eutrema salsugineum HOM05D002444 ORTHO05D009235 9.5e-23 112.5 130 44.6
FAN13G1854 Fragaria x ananassa HOM05D002444 ORTHO05D009235 2.1e-22 111.3 227 59.5
FAN04G0068 Fragaria x ananassa HOM05D002444 ORTHO05D009235 6.1e-22 109.8 227 59.0
SHI00166 Sapria himalayana HOM05D002444 ORTHO05D009235 6.1e-22 109.8 118 43.2
Gorai.005G136500 Gossypium raimondii HOM05D002444 ORTHO05D009235 4.0e-21 107.1 117 43.6
Lj6C687T6 Lonicera japonica HOM05D002444 ORTHO05D009235 1.5e-20 105.1 86 51.2
Gohir.A09G064700 Gossypium hirsutum HOM05D002444 ORTHO05D009235 7.5e-20 102.8 106 44.3
arahy.Tifrunner.gnm1.ann1.9AMP7R Arachis hypogaea HOM05D002444 ORTHO05D009235 1.7e-19 101.7 83 56.6
Manes.03G202100 Manihot esculenta HOM05D002444 ORTHO05D009235 3.7e-19 100.5 113 41.6
SGA_v2.0_scaffold18G08390 Striga asiatica HOM05D002444 ORTHO05D009235 4.9e-19 100.1 92 46.7
EL10Ac3g04919 Beta vulgaris HOM05D002444 ORTHO05D009235 7.0e-18 96.3 192 68.8
Rhsim04G0232800 Rhododendron simsii HOM05D002444 ORTHO05D009235 7.0e-18 96.3 225 60.0
Atru.chr2.1158 Acer truncatum HOM05D002444 ORTHO05D009235 2.7e-17 94.4 106 42.5
Atru.chr2.1176 Acer truncatum HOM05D002444 ORTHO05D009235 2.7e-17 94.4 106 42.5
Os12g0557800 Oryza sativa ssp. japonica HOM05D002444 ORTHO05D009235 2.7e-17 94.4 236 53.8
CAN.G197.15 Capsicum annuum HOM05D002444 ORTHO05D009235 3.5e-17 94.0 213 56.3
DCAR_023334 Daucus carota HOM05D002444 ORTHO05D009235 3.5e-17 94.0 106 37.7
Oeu036988.1 Olea europaea HOM05D002444 ORTHO05D009235 5.6e-15 86.7 144 31.9
Lj6C687T3 Lonicera japonica HOM05D002444 ORTHO05D009235 6.2e-14 83.2 188 68.1
CsaV3_3G015050 Cucumis sativus L. HOM05D002444 ORTHO05D009235 1.8e-13 81.6 202 63.4
COL.COLO4_34661 Corchorus olitorius HOM05D001121 ORTHO05D009235 2.3e-13 81.3 80 47.5
ClCG05G006410 Citrullus lanatus HOM05D002444 ORTHO05D009235 5.2e-13 80.1 85 44.7
Lsat_1_v5_gn_6_19160 Lactuca sativa HOM05D002444 ORTHO05D009235 5.2e-13 80.1 200 63.0
Lj4g0020012 Lotus japonicus HOM05D002444 ORTHO05D009235 3.4e-12 77.4 55 65.5
CDE02G3715 Ceratophyllum demersum HOM05D002444 ORTHO05D009235 1.3e-11 75.5 45 71.1
Migut.G00097 Erythranthe guttata HOM05D002444 ORTHO05D009235 1.3e-11 75.5 68 48.5
TWI73G0446 Tripterygium wilfordii HOM05D002444 ORTHO05D009235 2.2e-11 74.7 75 44.0
arahy.Tifrunner.gnm1.ann1.48GXQL Arachis hypogaea HOM05D002444 ORTHO05D009235 8.3e-11 72.8 45 71.1
arahy.Tifrunner.gnm1.ann1.ANG7EI Arachis hypogaea HOM05D002444 ORTHO05D009235 8.3e-11 72.8 64 50.0
AT3G16890 Arabidopsis thaliana HOM05D002444 ORTHO05D009235 7.0e-10 69.7 64 53.1
MELO3C006701.2 Cucumis melo HOM05D002444 ORTHO05D009235 1.6e-09 68.6 56 48.2
Actinidia40353 Actinidia chinensis HOM05D002444 ORTHO05D009235 6.0e-09 66.6 118 31.4
Eucgr.H04031 Eucalyptus grandis HOM05D002444 ORTHO05D009235 6.6e-08 63.2 156 64.7
unitig_748.g7794 Utricularia gibba HOM05D002444 ORTHO05D009235 1.1e-07 62.4 45 64.4
Thhalv10010303m.g Eutrema salsugineum HOM05D007660 ORTHO05D009442 4.3e-07 60.5 127 27.6
Aa31LG3G2070 Aethionema arabicum HOM05D000855 ORTHO05D008530 5.6e-07 60.1 103 32.0
Medtr1g018830 Medicago truncatula HOM05D055670 ORTHO05D267109 1.2e-06 58.9 133 32.3
CiPaw.05G164900 Carya illinoinensis HOM05D007937 ORTHO05D010000 2.8e-06 57.8 84 33.3
Gorai.006G078600 Gossypium raimondii HOM05D002444 ORTHO05D009235 2.8e-06 57.8 43 55.8
Nn3g21650 Nelumbo nucifera HOM05D002444 ORTHO05D009235 2.8e-06 57.8 176 61.4
BcaB05g23329 Brassica carinata HOM05D007660 ORTHO05D009442 3.6e-06 57.4 127 27.6
CiPaw.03G259000 Carya illinoinensis HOM05D024768 ORTHO05D021044 3.6e-06 57.4 99 34.3
BcaC03g13602 Brassica carinata HOM05D007660 ORTHO05D009442 4.7e-06 57.0 127 27.6
BolC2t06898H Brassica oleracea HOM05D007660 ORTHO05D009442 4.7e-06 57.0 127 27.6
Sp6g25850 Schrenkiella parvula HOM05D007660 ORTHO05D009442 6.2e-06 56.6 127 26.8
A02p04930 Brassica napus HOM05D007660 ORTHO05D009442 8.1e-06 56.2 127 28.3
C02p09910 Brassica napus HOM05D007660 ORTHO05D009442 8.1e-06 56.2 127 27.6
BraA02t05452Z Brassica rapa HOM05D007660 ORTHO05D009442 8.1e-06 56.2 127 27.6


User provided reference genes

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