Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_22424_v3 Cicer arietinum L. HOM05D007916 ORTHO05D010074 2.2e-100 369.0 188 100.0
Medtr8g073850 Medicago truncatula HOM05D007916 ORTHO05D010074 1.2e-79 300.1 191 80.6
Glyma.09G198900 Glycine max HOM05D007916 ORTHO05D010074 2.0e-77 292.7 188 76.1
Medtr8g073770 Medicago truncatula HOM05D007916 ORTHO05D010074 2.6e-77 292.4 191 79.1
Psat4g104200 Pisum sativum HOM05D007916 ORTHO05D010074 4.8e-76 288.1 188 78.2
Lj2g0002075 Lotus japonicus HOM05D007916 ORTHO05D010074 4.1e-75 285.0 189 74.1
TPR.G18290 Trifolium pratense HOM05D007916 ORTHO05D010074 2.9e-73 278.9 189 77.2
Lalb_Chr09g0321231 Lupinus albus HOM05D007916 ORTHO05D010074 4.2e-72 275.0 189 75.7
Phvul.003G269500 Phaseolus vulgaris HOM05D007916 ORTHO05D010074 1.2e-71 273.5 186 73.1
VMungo0251G0273 Vigna mungo HOM05D007916 ORTHO05D010074 6.8e-70 267.7 188 72.3
Lj2g0011068 Lotus japonicus HOM05D007916 ORTHO05D010074 1.8e-67 259.6 188 69.1
arahy.Tifrunner.gnm1.ann1.B3G9N7 Arachis hypogaea HOM05D007916 ORTHO05D010074 7.7e-66 254.2 149 81.9
arahy.Tifrunner.gnm1.ann1.IBR8Q2 Arachis hypogaea HOM05D007916 ORTHO05D010074 7.7e-66 254.2 149 81.9
COL.COLO4_22545 Corchorus olitorius HOM05D007916 ORTHO05D010074 7.7e-66 254.2 188 65.4
Manes.01G154600 Manihot esculenta HOM05D007916 ORTHO05D010074 2.3e-65 252.7 183 69.9
Potri.005G100700 Populus trichocarpa HOM05D007916 ORTHO05D010074 2.3e-65 252.7 183 70.5
Manes.17G004000 Manihot esculenta HOM05D007916 ORTHO05D010074 2.9e-65 252.3 183 69.4
Hma1.2p1_0085F.1_g044830 Hydrangea macrophylla HOM05D007916 ORTHO05D010074 5.0e-65 251.5 190 67.4
Manes.02G113500 Manihot esculenta HOM05D007916 ORTHO05D010074 8.6e-65 250.8 183 68.9
Cfa007071 Carpinus fangiana HOM05D007916 ORTHO05D010074 3.2e-64 248.8 173 73.4
Cfa021284 Carpinus fangiana HOM05D007916 ORTHO05D010074 4.2e-64 248.4 181 69.1
Nn5g30966 Nelumbo nucifera HOM05D007916 ORTHO05D010074 7.2e-64 247.7 189 68.3
Duzib264G1152 Durio zibethinus HOM05D007916 ORTHO05D010074 1.2e-63 246.9 184 65.2
Dinv40180 Davidia involucrata HOM05D000046 ORTHO05D000195 2.1e-63 246.1 153 77.8
QL06p052846 Quercus lobata HOM05D007916 ORTHO05D010074 2.1e-63 246.1 190 66.3
Glyma.11G085200 Glycine max HOM05D007916 ORTHO05D010074 3.6e-63 245.4 196 62.8
Prupe.7G181300 Prunus persica HOM05D007916 ORTHO05D010074 3.6e-63 245.4 188 64.4
Thecc.01G006300 Theobroma cacao HOM05D007916 ORTHO05D010074 8.0e-63 244.2 188 64.4
PGR102G1177 Punica granatum HOM05D007916 ORTHO05D010074 1.0e-62 243.8 186 66.7
MD02G1118100 Malus domestica HOM05D007916 ORTHO05D010074 2.3e-62 242.7 154 72.7
Sabra05G0083300 Salix brachista HOM05D007916 ORTHO05D010074 8.8e-62 240.7 174 70.7
CiPaw.08G181000 Carya illinoinensis HOM05D007916 ORTHO05D010074 4.4e-61 238.4 190 65.8
Phvul.002G115700 Phaseolus vulgaris HOM05D007916 ORTHO05D010074 9.8e-61 237.3 190 61.1
TAR381G0850 Trochodendron aralioides HOM05D007916 ORTHO05D010074 4.9e-60 235.0 186 64.5
CANSAT25G0415 Cannabis sativa HOM05D007916 ORTHO05D010074 1.8e-59 233.0 186 66.1
CAN.G1238.3 Capsicum annuum HOM05D007916 ORTHO05D010074 1.8e-59 233.0 152 73.7
FAN28G0654 Fragaria x ananassa HOM05D007916 ORTHO05D010074 1.8e-59 233.0 154 72.7
MBI08_g04809_MAGBIO Magnolia biondii HOM05D007916 ORTHO05D010074 1.8e-59 233.0 151 75.5
RcHm_v2.0_Chr2g0097361 Rosa chinensis HOM05D007916 ORTHO05D010074 2.4e-59 232.6 154 72.7
FvH4_1g10500 Fragaria vesca HOM05D007916 ORTHO05D010074 4.1e-59 231.9 154 72.1
FAN19G0206 Fragaria x ananassa HOM05D007916 ORTHO05D010074 4.1e-59 231.9 154 72.1
FAN26G2729 Fragaria x ananassa HOM05D007916 ORTHO05D010074 4.1e-59 231.9 154 72.1
FAN26G3374 Fragaria x ananassa HOM05D007916 ORTHO05D010074 4.1e-59 231.9 154 72.1
PGSC0003DMG403001521 Solanum tuberosum HOM05D007916 ORTHO05D010074 7.0e-59 231.1 152 73.7
Sopen02g027500 Solanum pennellii HOM05D007916 ORTHO05D010074 1.6e-58 229.9 188 63.3
MELO3C013719.2 Cucumis melo HOM05D007916 ORTHO05D010074 2.7e-58 229.2 181 64.1
MD02G1118400 Malus domestica HOM05D007916 ORTHO05D010074 5.9e-58 228.0 154 68.2
ClCG10G000210 Citrullus lanatus HOM05D007916 ORTHO05D010074 2.3e-57 226.1 149 73.8
Solyc02g082740.1 Solanum lycopersicum HOM05D007916 ORTHO05D010074 2.9e-57 225.7 188 62.2
ATR0661G436 Amborella trichopoda HOM05D007916 ORTHO05D010074 5.0e-57 224.9 171 64.9
HanXRQChr14g0442461 Helianthus annuus HOM05D007916 ORTHO05D010074 1.9e-56 223.0 185 62.7
CSS0010065 Camellia sinensis var. sinensis HOM05D007916 ORTHO05D010074 2.5e-56 222.6 150 72.0
Aqoxy6G01679 Aquilegia oxysepala HOM05D007916 ORTHO05D010074 5.6e-56 221.5 190 58.9
Ah.08g211140 Amaranthus hybridus HOM05D007916 ORTHO05D010074 1.2e-55 220.3 183 61.7
Lsat_1_v5_gn_2_73460 Lactuca sativa HOM05D007916 ORTHO05D010074 8.0e-55 217.6 188 61.7
AUR62040166 Chenopodium quinoa HOM05D007916 ORTHO05D010074 5.7e-53 211.5 148 70.9
AUR62037915 Chenopodium quinoa HOM05D007916 ORTHO05D010074 4.1e-51 205.3 148 68.2
HanXRQChr14g0442451 Helianthus annuus HOM05D007916 ORTHO05D010074 4.1e-51 205.3 183 56.8
Zm00001eb145860 Zea mays HOM05D007916 ORTHO05D010074 7.8e-50 201.1 150 62.0
Os01g0879200 Oryza sativa ssp. japonica HOM05D007916 ORTHO05D010074 2.2e-44 183.0 188 48.9
Sabra05G0083200 Salix brachista HOM05D007916 ORTHO05D010074 8.3e-44 181.0 183 53.6
EL10Ac4g07997 Beta vulgaris HOM05D007916 ORTHO05D010074 6.0e-42 174.9 180 50.6
AUR62034212 Chenopodium quinoa HOM05D007916 ORTHO05D010074 1.0e-41 174.1 183 48.1
Potri.005G100600 Populus trichocarpa HOM05D007916 ORTHO05D010074 1.3e-41 173.7 153 56.2
AUR62034214 Chenopodium quinoa HOM05D007916 ORTHO05D010074 3.0e-41 172.6 187 48.1
Lj4P234T30 Lonicera japonica HOM05D007916 ORTHO05D010074 1.9e-40 169.9 102 77.5
AUR62029252 Chenopodium quinoa HOM05D007916 ORTHO05D010074 5.6e-40 168.3 187 47.1
VMungo1215G2711 Vigna mungo HOM05D007916 ORTHO05D010074 1.2e-37 160.6 189 48.1
Ah.05g178650 Amaranthus hybridus HOM05D007916 ORTHO05D010074 2.6e-37 159.5 146 51.4
EL10Ac1g00145 Beta vulgaris HOM05D007916 ORTHO05D010074 4.4e-37 158.7 147 53.1
AUR62029249 Chenopodium quinoa HOM05D007916 ORTHO05D010074 7.5e-37 157.9 152 52.6
Os01g0879300 Oryza sativa ssp. japonica HOM05D007916 ORTHO05D010074 9.5e-32 141.0 163 44.2
AUR62014631 Chenopodium quinoa HOM05D007916 ORTHO05D010074 1.7e-20 103.6 115 43.5
SMO143G0023 Selaginella moellendorffii HOM05D007916 ORTHO05D010074 1.4e-19 100.5 146 34.2
Zm00001eb051440 Zea mays HOM05D007916 ORTHO05D010074 5.6e-16 88.6 80 51.2
Ah.09g237060 Amaranthus hybridus HOM05D007916 ORTHO05D010074 1.4e-14 84.0 90 45.6
AUR62029251 Chenopodium quinoa HOM05D007916 ORTHO05D010074 2.6e-13 79.7 93 43.0
QL08p032297 Quercus lobata HOM05D000180 ORTHO05D000099 4.9e-12 75.5 134 38.1
Zm00001eb212920 Zea mays HOM05D007916 ORTHO05D010074 9.3e-11 71.2 81 42.0
FAN09G1602 Fragaria x ananassa HOM05D000180 ORTHO05D000099 8.7e-09 64.7 151 31.1
Prupe.3G215600 Prunus persica HOM05D000180 ORTHO05D000099 8.7e-09 64.7 149 30.9
Phvul.001G145700 Phaseolus vulgaris HOM05D000180 ORTHO05D000099 1.1e-08 64.3 168 29.8
Potri.005G100750 Populus trichocarpa HOM05D007916 ORTHO05D010074 1.1e-08 64.3 92 47.8
CARHR053910 Cardamine hirsuta HOM05D000180 ORTHO05D000099 1.9e-08 63.5 152 30.9
Haze_12825 Corylus avellana HOM05D000180 ORTHO05D000099 3.3e-08 62.8 157 32.5
FAN02G4293 Fragaria x ananassa HOM05D000180 ORTHO05D000099 3.3e-08 62.8 151 31.1
AT1G58170 Arabidopsis thaliana HOM05D000180 ORTHO05D000099 4.3e-08 62.4 180 29.4
QL10p054545 Quercus lobata HOM05D000180 ORTHO05D000099 5.6e-08 62.0 159 32.1
GSVIVG01025394001 Vitis vinifera HOM05D000180 ORTHO05D000099 5.6e-08 62.0 127 30.7
AL2G18110 Arabidopsis lyrata HOM05D000180 ORTHO05D000099 7.4e-08 61.6 183 29.5
Lj1P768T21 Lonicera japonica HOM05D000180 ORTHO05D000099 1.3e-07 60.8 141 33.3
CSS0026090 Camellia sinensis var. sinensis HOM05D000180 ORTHO05D000099 1.6e-07 60.5 191 26.7
Haze_12837 Corylus avellana HOM05D000180 ORTHO05D000099 1.6e-07 60.5 159 32.7
Eucgr.A02481 Eucalyptus grandis HOM05D000180 ORTHO05D000099 1.6e-07 60.5 159 31.4
Phvul.010G063500 Phaseolus vulgaris HOM05D000180 ORTHO05D000099 1.6e-07 60.5 142 31.0
Glyma.03G044500 Glycine max HOM05D000180 ORTHO05D000099 2.1e-07 60.1 152 31.6
Manes.08G042000 Manihot esculenta HOM05D000180 ORTHO05D000099 2.1e-07 60.1 118 33.9
Cfa014363 Carpinus fangiana HOM05D000180 ORTHO05D000099 2.8e-07 59.7 102 35.3
SEGI_27732 Sequoiadendron giganteum HOM05D000180 ORTHO05D000099 2.8e-07 59.7 169 29.6
QL08p021396 Quercus lobata HOM05D000180 ORTHO05D000099 3.7e-07 59.3 126 31.7
PGR004G1299 Punica granatum HOM05D000180 ORTHO05D000099 4.8e-07 58.9 194 27.3
TPR.G5199 Trifolium pratense HOM05D000180 ORTHO05D000099 4.8e-07 58.9 109 29.4
TAR629G2632 Trochodendron aralioides HOM05D001508 ORTHO05D001381 4.8e-07 58.9 159 33.3
HPP92_003134 Vanilla planifolia HOM05D000180 ORTHO05D000099 4.8e-07 58.9 145 27.6
VMungo0331G1833 Vigna mungo HOM05D000180 ORTHO05D000099 4.8e-07 58.9 154 33.8
Manes.09G039100 Manihot esculenta HOM05D000180 ORTHO05D000099 6.2e-07 58.5 192 26.0
Nn7g35942 Nelumbo nucifera HOM05D000180 ORTHO05D000099 6.2e-07 58.5 163 27.6
Lj3g0008599 Lotus japonicus HOM05D000180 ORTHO05D000099 8.1e-07 58.2 149 30.2
PGSC0003DMG400032229 Solanum tuberosum HOM05D000180 ORTHO05D000099 1.1e-06 57.8 193 28.0
Haze_12834 Corylus avellana HOM05D000180 ORTHO05D000099 1.4e-06 57.4 159 30.8
Medtr4g013770 Medicago truncatula HOM05D000180 ORTHO05D000099 1.4e-06 57.4 148 25.0
QL08p032410 Quercus lobata HOM05D000180 ORTHO05D000099 1.4e-06 57.4 102 37.3
TWI79G0050 Tripterygium wilfordii HOM05D000180 ORTHO05D000099 1.4e-06 57.4 142 30.3
COL.COLO4_30590 Corchorus olitorius HOM05D000180 ORTHO05D000099 1.8e-06 57.0 128 31.2
FvH4_6g42490 Fragaria vesca HOM05D000180 ORTHO05D000099 1.8e-06 57.0 152 29.6
GSVIVG01025391001 Vitis vinifera HOM05D000180 ORTHO05D000099 1.8e-06 57.0 131 29.0
CANSAT64G0386 Cannabis sativa HOM05D000180 ORTHO05D000099 2.4e-06 56.6 194 26.8
Gohir.A10G062800 Gossypium hirsutum HOM05D000180 ORTHO05D000099 2.4e-06 56.6 162 30.9
TPR.G3827 Trifolium pratense HOM05D000180 ORTHO05D000099 2.4e-06 56.6 147 28.6
TPR.G5202 Trifolium pratense HOM05D000180 ORTHO05D000099 2.4e-06 56.6 154 31.2
TPR.G5231 Trifolium pratense HOM05D000180 ORTHO05D000099 2.4e-06 56.6 154 31.8
vmacro07885 Vaccinium macrocarpon HOM05D000180 ORTHO05D000099 2.4e-06 56.6 148 27.0
CiPaw.14G133500 Carya illinoinensis HOM05D000180 ORTHO05D000099 3.1e-06 56.2 153 28.1
Cc01_g01070 Coffea canephora HOM05D000180 ORTHO05D000099 3.1e-06 56.2 192 30.2
Haze_22987 Corylus avellana HOM05D000180 ORTHO05D000099 3.1e-06 56.2 152 27.6
MD14G1052400 Malus domestica HOM05D000180 ORTHO05D000099 3.1e-06 56.2 161 28.6
Medtr4g013320 Medicago truncatula HOM05D000180 ORTHO05D000099 3.1e-06 56.2 151 30.5
Sed0011412 Sechium edule HOM05D000180 ORTHO05D000099 3.1e-06 56.2 187 26.2
SMO304G0105 Selaginella moellendorffii HOM05D000180 ORTHO05D000099 3.1e-06 56.2 175 26.3
TAR629G1320 Trochodendron aralioides HOM05D001508 ORTHO05D001381 3.1e-06 56.2 159 32.7
BcaC06g31783 Brassica carinata HOM05D000180 ORTHO05D000099 4.0e-06 55.8 152 28.9
Thhalv10023714m.g Eutrema salsugineum HOM05D000180 ORTHO05D000099 4.0e-06 55.8 173 27.2
Glyma.11G150400 Glycine max HOM05D000180 ORTHO05D000099 4.0e-06 55.8 144 26.4
Sp2g05440 Schrenkiella parvula HOM05D000180 ORTHO05D000099 4.0e-06 55.8 186 26.9
Eucgr.A01114 Eucalyptus grandis HOM05D000180 ORTHO05D000099 5.3e-06 55.5 110 35.5
Glyma.03G147800 Glycine max HOM05D000180 ORTHO05D000099 5.3e-06 55.5 148 29.1
PSO339G5986 Papaver somniferum HOM05D000180 ORTHO05D000099 5.3e-06 55.5 151 27.8
Cfa009618 Carpinus fangiana HOM05D000180 ORTHO05D000099 6.9e-06 55.1 112 32.1
CiPaw.13G172400 Carya illinoinensis HOM05D000180 ORTHO05D000099 6.9e-06 55.1 148 29.1
Glyma.01G126700 Glycine max HOM05D000180 ORTHO05D000099 6.9e-06 55.1 146 26.7
Lalb_Chr19g0125451 Lupinus albus HOM05D000180 ORTHO05D000099 6.9e-06 55.1 157 28.0
GSVIVG01033447001 Vitis vinifera HOM05D000180 ORTHO05D000099 6.9e-06 55.1 169 29.6
GSVIVG01033451001 Vitis vinifera HOM05D000180 ORTHO05D000099 6.9e-06 55.1 180 26.1
Cfa009614 Carpinus fangiana HOM05D000180 ORTHO05D000099 9.0e-06 54.7 149 27.5
Haze_22988 Corylus avellana HOM05D000180 ORTHO05D000099 9.0e-06 54.7 174 21.8
Glyma.01G127200 Glycine max HOM05D000180 ORTHO05D000099 9.0e-06 54.7 150 31.3
Gohir.D04G090800 Gossypium hirsutum HOM05D000180 ORTHO05D000099 9.0e-06 54.7 148 24.3
Lalb_Chr07g0190971 Lupinus albus HOM05D000180 ORTHO05D000099 9.0e-06 54.7 181 29.3
Lalb_Chr12g0207301 Lupinus albus HOM05D000180 ORTHO05D000099 9.0e-06 54.7 145 32.4
PSO724G0087 Papaver somniferum HOM05D000180 ORTHO05D000099 9.0e-06 54.7 145 28.3
Phvul.010G063900 Phaseolus vulgaris HOM05D000180 ORTHO05D000099 9.0e-06 54.7 142 30.3
TPR.G5262 Trifolium pratense HOM05D000180 ORTHO05D000099 9.0e-06 54.7 149 29.5
TWI32G1165 Tripterygium wilfordii HOM05D000180 ORTHO05D000099 9.0e-06 54.7 148 27.0
TWI34G0222 Tripterygium wilfordii HOM05D000180 ORTHO05D000099 9.0e-06 54.7 148 26.4
TAR633G1081 Trochodendron aralioides HOM05D000180 ORTHO05D000099 9.0e-06 54.7 148 29.1
Zm00001eb118270 Zea mays HOM05D000180 ORTHO05D000099 9.0e-06 54.7 141 26.2


User provided reference genes

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