Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_22302_v3 Cicer arietinum L. HOM05D004700 ORTHO05D005576 4.3e-164 581.3 295 100.0
TPR.G16482 Trifolium pratense HOM05D004700 ORTHO05D005576 1.8e-141 506.1 304 84.5
Medtr8g054400 Medicago truncatula HOM05D004700 ORTHO05D005576 3.5e-137 491.9 299 84.6
Phvul.011G168700 Phaseolus vulgaris HOM05D004700 ORTHO05D005576 1.9e-135 486.1 304 81.2
Lalb_Chr19g0133711 Lupinus albus HOM05D004700 ORTHO05D005576 1.1e-130 470.3 313 78.6
Lj3g0009226 Lotus japonicus HOM05D004700 ORTHO05D005576 2.9e-128 462.2 295 78.6
Glyma.15G209600 Glycine max HOM05D004700 ORTHO05D005576 4.2e-127 458.4 304 78.0
THA.LOC104822577 Tarenaya hassleriana HOM05D004700 ORTHO05D005576 4.0e-117 425.2 306 70.3
TWI38G0408 Tripterygium wilfordii HOM05D004700 ORTHO05D005576 6.3e-115 417.9 296 73.0
Gohir.D11G302900 Gossypium hirsutum HOM05D004700 ORTHO05D005576 2.4e-114 416.0 296 69.9
Gohir.A11G289500 Gossypium hirsutum HOM05D004700 ORTHO05D005576 2.7e-113 412.5 296 69.3
QL08p024163 Quercus lobata HOM05D004700 ORTHO05D005576 1.0e-112 410.6 304 68.8
Glyma.09G099300 Glycine max HOM05D004700 ORTHO05D005576 1.3e-112 410.2 304 70.7
CANSAT56G3173 Cannabis sativa HOM05D004700 ORTHO05D005576 1.7e-112 409.8 312 69.2
Psat4g157000 Pisum sativum HOM05D004700 ORTHO05D005576 6.6e-112 407.9 304 72.0
Prupe.4G156500 Prunus persica HOM05D004700 ORTHO05D005576 1.8e-109 399.8 305 68.9
Thhalv10011691m.g Eutrema salsugineum HOM05D004700 ORTHO05D005576 6.8e-109 397.9 307 67.8
AT1G53490 Arabidopsis thaliana HOM05D004700 ORTHO05D005576 1.2e-108 397.1 307 67.1
AL1G62040 Arabidopsis lyrata HOM05D004700 ORTHO05D005576 1.5e-108 396.7 307 67.1
CiPaw.11G155900 Carya illinoinensis HOM05D004700 ORTHO05D005576 2.6e-108 396.0 294 69.4
C03p91550 Brassica napus HOM05D004700 ORTHO05D005576 4.4e-108 395.2 309 67.3
Carub.0001s4267 Capsella rubella HOM05D004700 ORTHO05D005576 9.8e-108 394.0 307 66.8
Sp1g40020 Schrenkiella parvula HOM05D004700 ORTHO05D005576 1.7e-107 393.3 307 67.4
Gorai.007G331800 Gossypium raimondii HOM05D004700 ORTHO05D005576 2.2e-107 392.9 306 66.3
BcaC01g01394 Brassica carinata HOM05D004700 ORTHO05D005576 3.7e-107 392.1 308 66.9
BolC3t21472H Brassica oleracea HOM05D004700 ORTHO05D005576 6.4e-107 391.3 309 66.7
CARHR043720 Cardamine hirsuta HOM05D004700 ORTHO05D005576 1.1e-106 390.6 299 67.6
BcaB07g33326 Brassica carinata HOM05D004700 ORTHO05D005576 2.0e-105 386.3 309 66.3
A05p18220 Brassica napus HOM05D004700 ORTHO05D005576 7.8e-105 384.4 308 66.2
Haze_09248 Corylus avellana HOM05D004700 ORTHO05D005576 7.8e-105 384.4 305 67.2
CsaV3_4G008200 Cucumis sativus L. HOM05D004700 ORTHO05D005576 7.8e-105 384.4 295 67.1
Hma1.2p1_0050F.1_g028780 Hydrangea macrophylla HOM05D004700 ORTHO05D005576 7.8e-105 384.4 296 67.2
Manes.15G098600 Manihot esculenta HOM05D004700 ORTHO05D005576 1.7e-104 383.3 305 66.2
Migut.H02024 Erythranthe guttata HOM05D004700 ORTHO05D005576 3.0e-104 382.5 308 65.9
VMungo1127G0687 Vigna mungo HOM05D004700 ORTHO05D005576 1.1e-103 380.6 257 78.2
Cc05_g10710 Coffea canephora HOM05D004700 ORTHO05D005576 2.1e-102 376.3 299 65.9
MELO3C016116.2 Cucumis melo HOM05D004700 ORTHO05D005576 2.8e-102 375.9 306 64.4
Thecc.07G132900 Theobroma cacao HOM05D004700 ORTHO05D005576 2.8e-102 375.9 296 66.2
Aa31LG10G1720 Aethionema arabicum HOM05D004700 ORTHO05D005576 1.8e-101 373.2 308 64.0
TWI38G0400 Tripterygium wilfordii HOM05D004700 ORTHO05D005576 2.3e-101 372.9 306 64.7
Zm00001eb239370 Zea mays HOM05D004700 ORTHO05D005576 1.3e-99 367.1 298 64.4
CiPaw.12G110800 Carya illinoinensis HOM05D004700 ORTHO05D005576 1.7e-99 366.7 304 64.1
Ciclev10016084m.g Citrus clementina HOM05D004700 ORTHO05D005576 2.2e-99 366.3 305 64.3
Duzib213G0278 Durio zibethinus HOM05D004700 ORTHO05D005576 2.9e-99 365.9 296 65.5
Nn6g34422 Nelumbo nucifera HOM05D004700 ORTHO05D005576 1.9e-98 363.2 305 62.3
Atru.chr2.1937 Acer truncatum HOM05D004700 ORTHO05D005576 2.1e-97 359.8 306 64.4
MD03G1247600 Malus domestica HOM05D004700 ORTHO05D005576 2.1e-97 359.8 306 63.1
Sabra11G0081100 Salix brachista HOM05D004700 ORTHO05D005576 2.7e-97 359.4 305 62.3
Actinidia12604 Actinidia chinensis HOM05D004700 ORTHO05D005576 3.5e-97 359.0 320 60.6
ECA236G3615 Erigeron canadensis HOM05D004700 ORTHO05D005576 3.5e-97 359.0 339 59.0
Atru.chr2.1968 Acer truncatum HOM05D004700 ORTHO05D005576 6.0e-97 358.2 306 64.1
Potri.011G104500 Populus trichocarpa HOM05D004700 ORTHO05D005576 5.1e-96 355.1 305 61.0
Oeu050672.1 Olea europaea HOM05D004700 ORTHO05D005576 2.5e-95 352.8 306 59.5
Actinidia03618 Actinidia chinensis HOM05D004700 ORTHO05D005576 3.3e-95 352.4 307 61.9
GSVIVG01014096001 Vitis vinifera HOM05D004700 ORTHO05D005576 4.3e-95 352.1 306 63.1
PSO541G3766 Papaver somniferum HOM05D004700 ORTHO05D005576 7.3e-95 351.3 295 61.0
vmacro11972 Vaccinium macrocarpon HOM05D004700 ORTHO05D005576 7.3e-95 351.3 306 62.1
EL10Ac4g08417 Beta vulgaris HOM05D004700 ORTHO05D005576 9.5e-95 350.9 305 61.0
Manes.03G079300 Manihot esculenta HOM05D004700 ORTHO05D005576 1.2e-94 350.5 295 63.1
Sed0011117 Sechium edule HOM05D004700 ORTHO05D005576 2.1e-94 349.7 298 62.1
Actinidia39420 Actinidia chinensis HOM05D004700 ORTHO05D005576 2.8e-94 349.4 309 61.8
CSS0040857 Camellia sinensis var. sinensis HOM05D004700 ORTHO05D005576 6.2e-94 348.2 304 61.2
Eucgr.F03234 Eucalyptus grandis HOM05D004700 ORTHO05D005576 3.1e-93 345.9 305 60.7
Sopen08g005940 Solanum pennellii HOM05D004700 ORTHO05D005576 1.2e-92 344.0 296 60.8
PGR031G0266 Punica granatum HOM05D004700 ORTHO05D005576 2.0e-92 343.2 304 62.5
Hma1.2p1_0325F.1_g125830 Hydrangea macrophylla HOM05D004700 ORTHO05D005576 2.6e-92 342.8 312 59.6
unitig_746.g26835 Utricularia gibba HOM05D004700 ORTHO05D005576 4.4e-92 342.0 337 57.3
Os02g0232100 Oryza sativa ssp. japonica HOM05D004700 ORTHO05D005576 9.9e-92 340.9 306 59.8
Rhsim06G0211800 Rhododendron simsii HOM05D004700 ORTHO05D005576 1.3e-91 340.5 301 62.1
arahy.Tifrunner.gnm1.ann1.7PP38G Arachis hypogaea HOM05D004700 ORTHO05D005576 2.2e-91 339.7 275 65.1
BraA08t32205Z Brassica rapa HOM05D004700 ORTHO05D005576 1.4e-90 337.0 307 59.9
arahy.Tifrunner.gnm1.ann1.DP9AR5 Arachis hypogaea HOM05D004700 ORTHO05D005576 2.4e-90 336.3 285 63.5
BcaC08g43535 Brassica carinata HOM05D004700 ORTHO05D005576 5.4e-90 335.1 319 58.3
CAN.G68.2 Capsicum annuum HOM05D004700 ORTHO05D005576 4.6e-89 332.0 306 58.2
RcHm_v2.0_Chr5g0029521 Rosa chinensis HOM05D004700 ORTHO05D005576 3.0e-88 329.3 295 61.4
A06p00990 Brassica napus HOM05D004700 ORTHO05D005576 1.9e-87 326.6 356 53.1
BraA06t23327Z Brassica rapa HOM05D004700 ORTHO05D005576 1.9e-87 326.6 356 53.1
BraA08t32208Z Brassica rapa HOM05D004700 ORTHO05D005576 1.9e-87 326.6 309 59.9
Lj1A824T63 Lonicera japonica HOM05D004700 ORTHO05D005576 1.9e-87 326.6 282 62.1
DCAR_013348 Daucus carota HOM05D004700 ORTHO05D005576 3.3e-87 325.9 310 57.4
Nitab4.5_0000348g0050 Nicotiana tabacum HOM05D004700 ORTHO05D005576 7.3e-87 324.7 306 58.2
Potri.001G383900 Populus trichocarpa HOM05D004700 ORTHO05D005576 9.5e-87 324.3 311 57.6
FAN11G3801 Fragaria x ananassa HOM05D004700 ORTHO05D005576 1.6e-86 323.6 318 58.5
Hund08843 Selenicereus undatus HOM05D004700 ORTHO05D005576 1.6e-86 323.6 307 58.0
MD11G1269900 Malus domestica HOM05D004700 ORTHO05D005576 2.8e-86 322.8 322 59.0
Nitab4.5_0000092g0360 Nicotiana tabacum HOM05D004700 ORTHO05D005576 2.8e-86 322.8 263 66.5
PSO675G6346 Papaver somniferum HOM05D004700 ORTHO05D005576 1.4e-85 320.5 307 56.0
ATR0602G050 Amborella trichopoda HOM05D004700 ORTHO05D005576 3.1e-85 319.3 319 54.5
ClCG07G010130 Citrullus lanatus HOM05D004700 ORTHO05D005576 3.1e-85 319.3 266 66.5
FAN16G2451 Fragaria x ananassa HOM05D004700 ORTHO05D005576 5.2e-85 318.5 318 57.9
BcaB02g10917 Brassica carinata HOM05D004700 ORTHO05D005576 6.8e-85 318.2 311 57.2
FvH4_3g17740 Fragaria vesca HOM05D004700 ORTHO05D005576 1.5e-84 317.0 295 60.3
HanXRQChr15g0492381 Helianthus annuus HOM05D004700 ORTHO05D005576 3.4e-84 315.8 314 54.5
SGA_v2.0_scaffold181G39765 Striga asiatica HOM05D004700 ORTHO05D005576 8.4e-83 311.2 310 56.1
MBI06_g08516_MAGBIO Magnolia biondii HOM05D004700 ORTHO05D005576 4.6e-81 305.4 321 54.5
Sc03g0010710 Simmondsia chinensis HOM05D004700 ORTHO05D005576 3.0e-80 302.8 282 58.9
C06p09250 Brassica napus HOM05D004700 ORTHO05D005576 1.4e-77 293.9 350 50.9
BolC6t36002H Brassica oleracea HOM05D004700 ORTHO05D005576 1.4e-77 293.9 350 50.9
Dinv26707 Davidia involucrata HOM05D004700 ORTHO05D005576 3.1e-77 292.7 295 57.3
Sabra16G0252900 Salix brachista HOM05D004700 ORTHO05D005576 4.0e-77 292.4 339 51.0
Solyc08g015770.4 Solanum lycopersicum HOM05D004700 ORTHO05D005576 3.4e-76 289.3 285 56.8
Aqoxy1G01902 Aquilegia oxysepala HOM05D004700 ORTHO05D005576 1.1e-74 284.3 214 66.8
Peaxi162Scf00111g01325 Petunia axillaris HOM05D004700 ORTHO05D005576 2.7e-73 279.6 245 63.7
Nitab4.5_0012258g0020 Nicotiana tabacum HOM05D004700 ORTHO05D005576 1.1e-71 274.2 283 55.5
TAR624G0400 Trochodendron aralioides HOM05D004700 ORTHO05D005576 1.9e-71 273.5 280 54.6
Cpa.g.sc77.62 Carica papaya HOM05D004700 ORTHO05D005576 2.5e-71 273.1 233 68.2
BcaB04g17077 Brassica carinata HOM05D004700 ORTHO05D005576 4.3e-71 272.3 296 52.7
Sed0005766 Sechium edule HOM05D004700 ORTHO05D005576 2.8e-70 269.6 214 65.0
RhsimUnG0206700 Rhododendron simsii HOM05D004700 ORTHO05D005576 3.6e-70 269.2 312 51.9
Sabra11G0076400 Salix brachista HOM05D004700 ORTHO05D005576 1.2e-68 264.2 306 51.6
MSTRG.12860 Avicennia marina HOM05D004700 ORTHO05D005576 1.1e-66 257.7 237 62.4
Cfa019516 Carpinus fangiana HOM05D004700 ORTHO05D005576 2.4e-66 256.5 240 62.1
CSS0048020 Camellia sinensis var. sinensis HOM05D004700 ORTHO05D005576 4.2e-66 255.8 256 57.8
CSS0037390 Camellia sinensis var. sinensis HOM05D004700 ORTHO05D005576 1.6e-65 253.8 256 57.4
COL.COLO4_17473 Corchorus olitorius HOM05D004700 ORTHO05D005576 1.0e-64 251.1 233 60.9
Lsat_1_v5_gn_7_101801 Lactuca sativa HOM05D004700 ORTHO05D005576 2.1e-62 243.4 296 52.4
C06p14980 Brassica napus HOM05D004700 ORTHO05D005576 6.9e-61 238.4 224 60.7
BolC6t36675H Brassica oleracea HOM05D004700 ORTHO05D005576 6.9e-61 238.4 224 60.7
BcaC08g44093 Brassica carinata HOM05D004700 ORTHO05D005576 1.1e-58 231.1 242 57.0
BraA05t20718Z Brassica rapa HOM05D004700 ORTHO05D005576 2.7e-57 226.5 146 74.7
Dinv13363 Davidia involucrata HOM05D004700 ORTHO05D005576 3.3e-55 219.5 189 60.8
AUR62039578 Chenopodium quinoa HOM05D004700 ORTHO05D005576 4.3e-55 219.2 231 55.8
AUR62019650 Chenopodium quinoa HOM05D004700 ORTHO05D005576 2.1e-54 216.9 231 55.4
Sabra11G0075900 Salix brachista HOM05D004700 ORTHO05D005576 3.1e-53 213.0 219 53.0
CDE06G2539 Ceratophyllum demersum HOM05D004700 ORTHO05D005576 1.7e-51 207.2 244 50.8
Ah.04g164030 Amaranthus hybridus HOM05D004700 ORTHO05D005576 1.4e-50 204.1 231 52.4
PGSC0003DMG400013718 Solanum tuberosum HOM05D004700 ORTHO05D005576 1.4e-50 204.1 232 52.6
CDE02G3773 Ceratophyllum demersum HOM05D004700 ORTHO05D005576 3.7e-46 189.5 289 39.1
Ah.06g187700 Amaranthus hybridus HOM05D004700 ORTHO05D005576 4.8e-46 189.1 233 51.9
Pp3c8_15890 Physcomitrium patens HOM05D004700 ORTHO05D005576 1.4e-45 187.6 319 38.9
SEGI_00597 Sequoiadendron giganteum HOM05D004700 ORTHO05D005576 1.0e-43 181.4 246 48.4
Oeu010032.1 Olea europaea HOM05D004700 ORTHO05D005576 8.5e-43 178.3 296 40.5
DCAR_021040 Daucus carota HOM05D004700 ORTHO05D005576 1.9e-42 177.2 240 48.8
Sabra11G0076300 Salix brachista HOM05D004700 ORTHO05D005576 2.5e-42 176.8 177 55.9
Gorai.002G047100 Gossypium raimondii HOM05D004700 ORTHO05D005576 4.6e-41 172.6 233 46.8
Peaxi162Scf00000g00759 Petunia axillaris HOM05D004700 ORTHO05D005576 5.1e-40 169.1 233 47.6
AagrBONN_evm.TU.Sc2ySwM_362.885 Anthoceros agrestis HOM05D004700 ORTHO05D005576 1.7e-38 164.1 188 46.8
Mapoly0001s0250 Marchantia polymorpha HOM05D004700 ORTHO05D005576 2.8e-38 163.3 309 33.7
FAN25G1946 Fragaria x ananassa HOM05D004700 ORTHO05D005576 1.1e-37 161.4 244 45.9
Sc07g0002390 Simmondsia chinensis HOM05D004700 ORTHO05D005576 1.4e-37 161.0 145 61.4
Sabra11G0075300 Salix brachista HOM05D004700 ORTHO05D005576 2.4e-37 160.2 157 59.9
Actinidia04620 Actinidia chinensis HOM05D004700 ORTHO05D005576 3.6e-33 146.4 167 54.5
Actinidia04619 Actinidia chinensis HOM05D004700 ORTHO05D005576 7.9e-33 145.2 74 81.1
Sabra11G0075500 Salix brachista HOM05D004700 ORTHO05D005576 1.7e-30 137.5 154 52.6
Zm00001eb164550 Zea mays HOM05D004700 ORTHO05D005576 7.0e-29 132.1 73 72.6
Ah.06g187690 Amaranthus hybridus HOM05D004700 ORTHO05D000031 1.0e-27 128.3 93 65.6
Zm00001eb364990 Zea mays HOM05D001185 ORTHO05D005576 7.2e-26 122.1 123 56.1
Gohir.D01G038350 Gossypium hirsutum HOM05D004700 ORTHO05D005576 8.0e-25 118.6 146 49.3
Zm00001eb337320 Zea mays HOM05D004700 ORTHO05D005576 8.8e-24 115.2 168 41.1
Cre03.g161500 Chlamydomonas reinhardtii HOM05D004700 ORTHO05D005576 1.3e-22 111.3 179 30.7
Zm00001eb046150 Zea mays HOM05D004700 ORTHO05D005576 8.2e-22 108.6 103 49.5
Aqoxy1G01901 Aquilegia oxysepala HOM05D004700 ORTHO05D005576 3.5e-20 103.2 81 64.2
Zm00001eb352830 Zea mays HOM05D004700 ORTHO05D005576 1.6e-17 94.4 50 74.0
Sc07g0002380 Simmondsia chinensis HOM05D004700 ORTHO05D005576 5.7e-15 85.9 92 53.3
Nitab4.5_0000244g0440 Nicotiana tabacum HOM05D000856 ORTHO05D001792 1.3e-11 74.7 75 58.7
Lsat_1_v5_gn_8_31621 Lactuca sativa HOM05D003665 ORTHO05D004387 6.5e-11 72.4 52 69.2
Lsat_1_v5_gn_6_80301 Lactuca sativa HOM05D003665 ORTHO05D004387 1.5e-10 71.2 64 57.8
Peaxi162Scf00000g00758 Petunia axillaris HOM05D004700 ORTHO05D005576 4.4e-07 59.7 100 35.0


User provided reference genes

Program Settings