Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_22253_v3 Cicer arietinum L. HOM05D002544 ORTHO05D007277 1.4e-66 256.1 132 100.0
Ca_26386_v3 Cicer arietinum L. HOM05D002544 ORTHO05D007277 8.7e-64 246.9 130 96.9
Medtr5g077840 Medicago truncatula HOM05D002544 ORTHO05D007277 1.3e-54 216.5 130 83.8
Glyma.14G212800 Glycine max HOM05D002544 ORTHO05D007277 1.4e-50 203.0 130 80.8
VMungo0647G0515 Vigna mungo HOM05D002544 ORTHO05D007277 1.2e-49 199.9 130 80.0
Phvul.008G237900 Phaseolus vulgaris HOM05D002544 ORTHO05D007277 2.1e-49 199.1 130 80.0
Glyma.02G243700 Glycine max HOM05D002544 ORTHO05D007277 1.8e-48 196.1 130 80.0
LjContig00141g0018139 Lotus japonicus HOM05D002544 ORTHO05D007277 2.3e-48 195.7 130 78.5
arahy.Tifrunner.gnm1.ann1.8QPJ7C Arachis hypogaea HOM05D002544 ORTHO05D007277 3.1e-45 185.3 130 76.2
arahy.Tifrunner.gnm1.ann1.N8969K Arachis hypogaea HOM05D002544 ORTHO05D007277 3.1e-45 185.3 130 76.2
arahy.Tifrunner.gnm1.ann1.F4VH9C Arachis hypogaea HOM05D002544 ORTHO05D007277 3.4e-44 181.8 130 73.8
arahy.Tifrunner.gnm1.ann1.Y37JRT Arachis hypogaea HOM05D002544 ORTHO05D007277 7.6e-44 180.6 126 77.0
Lalb_Chr04g0251431 Lupinus albus HOM05D002544 ORTHO05D007277 2.9e-43 178.7 131 74.0
GSVIVG01015995001 Vitis vinifera HOM05D002544 ORTHO05D007277 9.0e-37 157.1 137 63.5
CiPaw.03G074400 Carya illinoinensis HOM05D002544 ORTHO05D007277 1.2e-36 156.8 136 65.4
Prupe.3G165000 Prunus persica HOM05D002544 ORTHO05D007277 2.5e-34 149.1 129 65.1
QL03p020238 Quercus lobata HOM05D002544 ORTHO05D007277 2.5e-34 149.1 135 62.2
PGR004G1667 Punica granatum HOM05D002544 ORTHO05D007277 7.2e-34 147.5 135 64.4
Duzib138G1710 Durio zibethinus HOM05D002544 ORTHO05D007277 1.2e-33 146.7 131 61.1
Hma1.2p1_1443F.1_g283880 Hydrangea macrophylla HOM05D002544 ORTHO05D007277 1.2e-33 146.7 131 62.6
MD09G1267400 Malus domestica HOM05D002544 ORTHO05D007277 2.1e-33 146.0 129 63.6
QL02p059524 Quercus lobata HOM05D002544 ORTHO05D007277 3.6e-33 145.2 135 61.5
CSS0009784 Camellia sinensis var. sinensis HOM05D002544 ORTHO05D007277 7.9e-33 144.1 129 63.6
Sabra04G0055200 Salix brachista HOM05D002544 ORTHO05D007856 7.9e-33 144.1 153 57.5
CSS0024967 Camellia sinensis var. sinensis HOM05D002544 ORTHO05D007277 1.0e-32 143.7 129 63.6
Lsat_1_v5_gn_3_64121 Lactuca sativa HOM05D002544 ORTHO05D007277 1.3e-32 143.3 134 61.2
Lj2C517G4 Lonicera japonica HOM05D002544 ORTHO05D007277 2.3e-32 142.5 132 60.6
PSO421G0270 Papaver somniferum HOM05D002544 ORTHO05D007277 2.3e-32 142.5 136 61.0
Aqoxy3G04065 Aquilegia oxysepala HOM05D002544 ORTHO05D007277 3.0e-32 142.1 134 61.9
Potri.004G083200 Populus trichocarpa HOM05D002544 ORTHO05D007277 3.0e-32 142.1 137 60.6
TWI74G0587 Tripterygium wilfordii HOM05D002544 ORTHO05D007277 3.9e-32 141.7 129 62.8
AT5G37530 Arabidopsis thaliana HOM05D002544 ORTHO05D007277 6.7e-32 141.0 129 62.8
FAN26G0021 Fragaria x ananassa HOM05D002544 ORTHO05D007277 6.7e-32 141.0 130 61.5
THA.LOC104823837 Tarenaya hassleriana HOM05D002544 ORTHO05D007277 1.1e-31 140.2 139 58.3
vmacro20588 Vaccinium macrocarpon HOM05D002544 ORTHO05D007277 1.5e-31 139.8 133 60.9
Atru.chr1.2027 Acer truncatum HOM05D002544 ORTHO05D007277 1.9e-31 139.4 129 62.0
Gohir.D11G175100 Gossypium hirsutum HOM05D002544 ORTHO05D007277 1.9e-31 139.4 130 61.5
Gorai.007G187700 Gossypium raimondii HOM05D002544 ORTHO05D007277 1.9e-31 139.4 130 61.5
Manes.17G002000 Manihot esculenta HOM05D002544 ORTHO05D007277 1.9e-31 139.4 132 62.9
Sc04g0005090 Simmondsia chinensis HOM05D002544 ORTHO05D007277 2.5e-31 139.0 134 60.4
TAR374G1249 Trochodendron aralioides HOM05D002544 ORTHO05D007277 2.5e-31 139.0 136 61.8
AL7G46290 Arabidopsis lyrata HOM05D002544 ORTHO05D007277 4.3e-31 138.3 129 61.2
Carub.0007s3270 Capsella rubella HOM05D002544 ORTHO05D007277 5.7e-31 137.9 129 60.5
FvH4_1g29991 Fragaria vesca HOM05D002544 ORTHO05D007277 5.7e-31 137.9 139 58.3
Gohir.A11G168900 Gossypium hirsutum HOM05D002544 ORTHO05D007277 9.7e-31 137.1 130 60.8
RcHm_v2.0_Chr3g0492321 Rosa chinensis HOM05D002544 ORTHO05D007277 9.7e-31 137.1 140 57.1
SGA_v2.0_scaffold45G17141 Striga asiatica HOM05D002544 ORTHO05D007277 9.7e-31 137.1 133 60.9
Actinidia17195 Actinidia chinensis HOM05D002544 ORTHO05D007277 1.3e-30 136.7 133 62.4
HanXRQChr16g0532851 Helianthus annuus HOM05D002544 ORTHO05D007277 1.3e-30 136.7 134 58.2
PSO063G7385 Papaver somniferum HOM05D002544 ORTHO05D007277 1.3e-30 136.7 137 59.9
Thecc.04G063800 Theobroma cacao HOM05D002544 ORTHO05D007277 8.2e-30 134.0 130 59.2
BcaB06g27087 Brassica carinata HOM05D002544 ORTHO05D007277 1.4e-29 133.3 134 59.0
CAN.G733.10 Capsicum annuum HOM05D002544 ORTHO05D007277 1.4e-29 133.3 131 57.3
Sopen05g029600 Solanum pennellii HOM05D002544 ORTHO05D007277 1.8e-29 132.9 129 57.4
MSTRG.15655 Avicennia marina HOM05D002544 ORTHO05D007277 2.4e-29 132.5 129 58.9
Migut.K00934 Erythranthe guttata HOM05D002544 ORTHO05D007277 2.4e-29 132.5 129 59.7
Eucgr.F02880 Eucalyptus grandis HOM05D002544 ORTHO05D007277 3.1e-29 132.1 130 58.5
PGSC0003DMG401014608 Solanum tuberosum HOM05D002544 ORTHO05D007277 3.1e-29 132.1 132 56.8
CANSAT54G1265 Cannabis sativa HOM05D002544 ORTHO05D007277 5.3e-29 131.3 132 59.1
Cc07_g13180 Coffea canephora HOM05D002544 ORTHO05D007277 5.3e-29 131.3 133 57.1
Solyc05g051230.4 Solanum lycopersicum HOM05D002544 ORTHO05D007277 5.3e-29 131.3 129 56.6
A04p10670 Brassica napus HOM05D002544 ORTHO05D007277 6.9e-29 131.0 130 57.7
COL.COLO4_11381 Corchorus olitorius HOM05D002544 ORTHO05D007277 6.9e-29 131.0 131 56.5
BraA04t16734Z Brassica rapa HOM05D002544 ORTHO05D007277 9.1e-29 130.6 137 55.5
Ah.11g047270 Amaranthus hybridus HOM05D002544 ORTHO05D007277 1.2e-28 130.2 134 57.5
BcaC02g09580 Brassica carinata HOM05D002544 ORTHO05D007277 1.2e-28 130.2 129 58.1
C04p44390 Brassica napus HOM05D002544 ORTHO05D007277 1.2e-28 130.2 129 58.1
SalBow5G3645 Salvia bowleyana HOM05D002544 ORTHO05D007277 1.5e-28 129.8 131 58.8
CsaV3_3G009890 Cucumis sativus L. HOM05D002544 ORTHO05D007277 2.0e-28 129.4 130 58.5
Sp7g04620 Schrenkiella parvula HOM05D002544 ORTHO05D007277 2.6e-28 129.0 129 58.1
BolC4t26010H Brassica oleracea HOM05D002544 ORTHO05D007277 3.4e-28 128.6 132 57.6
ECA240G4132 Erigeron canadensis HOM05D002544 ORTHO05D004529 5.9e-28 127.9 136 57.4
Nitab4.5_0010055g0010 Nicotiana tabacum HOM05D002544 ORTHO05D007277 2.2e-27 125.9 130 54.6
EL10Ac5g11231 Beta vulgaris HOM05D002544 ORTHO05D007277 3.8e-27 125.2 133 56.4
Sed0005203 Sechium edule HOM05D002544 ORTHO05D007277 5.0e-27 124.8 134 55.2
Hund02530 Selenicereus undatus HOM05D002544 ORTHO05D007277 5.0e-27 124.8 136 57.4
Nitab4.5_0000777g0030 Nicotiana tabacum HOM05D002544 ORTHO05D007277 8.5e-27 124.0 130 53.1
Os06g0251000 Oryza sativa ssp. japonica HOM05D002544 ORTHO05D007277 8.5e-27 124.0 127 56.7
ClCG05G002460 Citrullus lanatus HOM05D002544 ORTHO05D007277 1.9e-26 122.9 133 57.1
ATR0021G008 Amborella trichopoda HOM05D002544 ORTHO05D007277 1.2e-25 120.2 131 55.0
AUR62032172 Chenopodium quinoa HOM05D002544 ORTHO05D007277 1.2e-25 120.2 146 50.7
CDE05G0883 Ceratophyllum demersum HOM05D002544 ORTHO05D007277 4.7e-25 118.2 142 52.8
FAN28G1946 Fragaria x ananassa HOM05D002544 ORTHO05D007277 7.9e-25 117.5 89 70.8
Hma1.2p1_1443F.1_g283890 Hydrangea macrophylla HOM05D002544 ORTHO05D007277 1.0e-24 117.1 80 76.2
HPP92_021315 Vanilla planifolia HOM05D002544 ORTHO05D007277 1.8e-24 116.3 140 47.9
Hma1.2p1_1214F.1_g267540 Hydrangea macrophylla HOM05D002544 ORTHO05D007277 2.3e-24 115.9 64 90.6
Zm00001eb280220 Zea mays HOM05D002544 ORTHO05D007277 2.3e-24 115.9 131 54.2
Cpa.g.sc116.80 Carica papaya HOM05D002544 ORTHO05D007277 3.9e-24 115.2 68 83.8
Haze_14287 Corylus avellana HOM05D002544 ORTHO05D007277 3.9e-24 115.2 76 78.9
DCAR_010067 Daucus carota HOM05D002544 ORTHO05D007277 3.9e-24 115.2 64 89.1
FAN19G1253 Fragaria x ananassa HOM05D002544 ORTHO05D007277 1.1e-23 113.6 89 69.7
AagrBONN_evm.TU.Sc2ySwM_228.346 Anthoceros agrestis HOM05D002544 ORTHO05D007277 2.0e-23 112.8 122 51.6
SEGI_40484 Sequoiadendron giganteum HOM05D002544 ORTHO05D007277 3.3e-23 112.1 100 61.0
Aa31LG9G17540 Aethionema arabicum HOM05D002544 ORTHO05D007277 4.4e-23 111.7 88 70.5
Peaxi162Scf00424g00516 Petunia axillaris HOM05D002544 ORTHO05D007277 7.4e-23 110.9 77 71.4
MBI13_g24910_MAGBIO Magnolia biondii HOM05D002544 ORTHO05D007277 1.7e-22 109.8 70 80.0
Rhsim10G0180300 Rhododendron simsii HOM05D002544 ORTHO05D007856 1.7e-22 109.8 185 42.2
SHI30127 Sapria himalayana HOM05D002544 ORTHO05D007277 6.9e-21 104.4 76 71.1
MELO3C006210.2 Cucumis melo HOM05D002544 ORTHO05D007277 9.1e-21 104.0 123 52.8
Ciclev10003868m.g Citrus clementina HOM05D002544 ORTHO05D007277 3.4e-20 102.1 128 49.2
TPR.G23661 Trifolium pratense HOM05D002544 ORTHO05D007277 5.9e-20 101.3 58 91.4
Pp3c14_20390 Physcomitrium patens HOM05D002544 ORTHO05D007277 1.0e-19 100.5 142 44.4
SMO367G0951 Selaginella moellendorffii HOM05D002544 ORTHO05D007277 1.9e-18 96.3 62 71.0
SHI21777 Sapria himalayana HOM05D002544 ORTHO05D007277 4.2e-18 95.1 60 78.3
Cre03.g159400 Chlamydomonas reinhardtii HOM05D002544 ORTHO05D007277 1.2e-17 93.6 130 44.6
Gohir.D13G118500 Gossypium hirsutum HOM05D002544 ORTHO05D007277 6.1e-17 91.3 51 88.2
Gohir.D01G158101 Gossypium hirsutum HOM05D002544 ORTHO05D007277 1.0e-16 90.5 51 86.3
Gorai.013G132900 Gossypium raimondii HOM05D002544 ORTHO05D007277 1.4e-16 90.1 50 88.0
Gorai.009G336200 Gossypium raimondii HOM05D000894 ORTHO05D007277 1.8e-16 89.7 50 88.0
Mapoly0047s0092 Marchantia polymorpha HOM05D002544 ORTHO05D007277 3.9e-16 88.6 64 68.8
Gohir.D11G220600 Gossypium hirsutum HOM05D002544 ORTHO05D007277 5.2e-16 88.2 51 84.3
MCO01G178 Micromonas commoda HOM05D002544 ORTHO05D007277 6.7e-16 87.8 62 67.7
PRCOL_00003184 Prasinoderma coloniale HOM05D002544 ORTHO05D007277 2.6e-15 85.9 60 66.7
CBR_g12327 Chara braunii HOM05D002544 ORTHO05D007277 2.2e-11 72.8 88 40.9
unitig_32.g10721 Utricularia gibba HOM05D002544 ORTHO05D007277 2.5e-10 69.3 91 46.2
CARHR215380 Cardamine hirsuta HOM05D002544 ORTHO05D007277 1.2e-09 67.0 35 94.3


User provided reference genes

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