Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_22230_v3 Cicer arietinum L. HOM05D006685 ORTHO05D008244 0.0e+00 1202.2 589 100.0
Ca_22212_v3 Cicer arietinum L. HOM05D006685 ORTHO05D008244 0.0e+00 1196.0 585 100.0
Medtr8g079100 Medicago truncatula HOM05D006685 ORTHO05D008244 1.6e-258 896.0 663 70.4
Psat4g089520 Pisum sativum HOM05D006685 ORTHO05D008244 3.9e-257 891.3 663 70.3
TPR.G30340 Trifolium pratense HOM05D006685 ORTHO05D008244 8.7e-257 890.2 662 70.5
Lj4g0023849 Lotus japonicus HOM05D006685 ORTHO05D008244 8.2e-215 750.7 663 60.0
VMungo0251G1647 Vigna mungo HOM05D006685 ORTHO05D008244 3.5e-213 745.3 679 58.0
Glyma.02G062800 Glycine max HOM05D006685 ORTHO05D008244 4.0e-209 731.9 676 58.7
Phvul.003G248400 Phaseolus vulgaris HOM05D006685 ORTHO05D008244 1.3e-204 716.8 678 56.8
Lalb_Chr16g0388451 Lupinus albus HOM05D006685 ORTHO05D008244 1.5e-200 703.4 674 56.5
arahy.Tifrunner.gnm1.ann1.5EE2XW Arachis hypogaea HOM05D006685 ORTHO05D008244 1.1e-129 468.0 392 61.2
Cfa004216 Carpinus fangiana HOM05D006685 ORTHO05D008244 5.9e-128 462.2 669 42.2
QL06p043714 Quercus lobata HOM05D006685 ORTHO05D008244 2.3e-124 450.3 681 39.5
CiPaw.02G011900 Carya illinoinensis HOM05D006685 ORTHO05D008244 1.4e-116 424.5 669 38.1
Sabra05G0107200 Salix brachista HOM05D006685 ORTHO05D008244 5.7e-115 419.1 672 38.5
Potri.005G133500 Populus trichocarpa HOM05D006685 ORTHO05D008244 2.4e-113 413.7 682 37.7
Atru.chr3.446 Acer truncatum HOM05D006685 ORTHO05D008244 1.3e-111 407.9 687 37.1
Dinv26751 Davidia involucrata HOM05D006685 ORTHO05D008244 4.7e-109 399.4 675 38.5
FAN28G1646 Fragaria x ananassa HOM05D006685 ORTHO05D008244 1.8e-108 397.5 666 37.7
FAN28G0684 Fragaria x ananassa HOM05D006685 ORTHO05D008244 8.8e-108 395.2 666 37.4
RcHm_v2.0_Chr2g0103811 Rosa chinensis HOM05D006685 ORTHO05D008244 1.1e-107 394.8 671 38.0
FvH4_1g14850 Fragaria vesca HOM05D006685 ORTHO05D008244 1.5e-107 394.4 666 37.7
FAN23G0082 Fragaria x ananassa HOM05D006685 ORTHO05D008244 4.4e-107 392.9 668 37.6
FAN26G3106 Fragaria x ananassa HOM05D006685 ORTHO05D008244 9.1e-105 385.2 696 35.9
COL.COLO4_11329 Corchorus olitorius HOM05D006685 ORTHO05D008244 2.0e-104 384.0 642 38.2
Thecc.01G048300 Theobroma cacao HOM05D006685 ORTHO05D008244 2.2e-103 380.6 659 36.7
CSS0018173 Camellia sinensis var. sinensis HOM05D006685 ORTHO05D008244 7.2e-102 375.6 670 35.5
MD15G1276100 Malus domestica HOM05D006685 ORTHO05D008244 1.2e-101 374.8 668 36.5
Manes.13G130000 Manihot esculenta HOM05D006685 ORTHO05D008244 3.6e-101 373.2 688 34.6
Duzib187G0300 Durio zibethinus HOM05D006685 ORTHO05D008244 2.3e-100 370.5 662 36.0
TAR376G1120 Trochodendron aralioides HOM05D006685 ORTHO05D008244 3.0e-100 370.2 701 34.7
Actinidia36520 Actinidia chinensis HOM05D006685 ORTHO05D008244 1.2e-99 368.2 687 35.7
RcHm_v2.0_Chr1g0329901 Rosa chinensis HOM05D006685 ORTHO05D008244 2.4e-97 360.5 664 35.7
CANSAT01G2373 Cannabis sativa HOM05D006685 ORTHO05D008244 4.1e-97 359.8 671 34.9
Hma1.2p1_0546F.1_g176210 Hydrangea macrophylla HOM05D006685 ORTHO05D008244 1.7e-95 354.4 605 36.0
Aqoxy6G00915 Aquilegia oxysepala HOM05D006685 ORTHO05D008244 3.2e-94 350.1 657 35.5
Ciclev10025347m.g Citrus clementina HOM05D006685 ORTHO05D008244 4.2e-94 349.7 482 43.4
Prupe.7G141900 Prunus persica HOM05D006685 ORTHO05D008244 4.2e-94 349.7 668 35.9
Lj7A20T60 Lonicera japonica HOM05D006685 ORTHO05D008244 4.0e-92 343.2 625 34.9
Lj7A17G42 Lonicera japonica HOM05D006685 ORTHO05D008244 7.5e-91 339.0 531 38.0
Sed0001332 Sechium edule HOM05D006685 ORTHO05D008244 2.8e-90 337.0 678 33.5
CsaV3_2G016900 Cucumis sativus L. HOM05D006685 ORTHO05D008244 3.7e-90 336.7 678 34.2
Gohir.A12G068800 Gossypium hirsutum HOM05D006685 ORTHO05D008244 5.4e-89 332.8 656 34.8
ClCG02G012840 Citrullus lanatus HOM05D006685 ORTHO05D008244 2.0e-88 330.9 706 32.7
Hund16306 Selenicereus undatus HOM05D006685 ORTHO05D008244 5.9e-88 329.3 667 32.7
Gohir.D12G090400 Gossypium hirsutum HOM05D006685 ORTHO05D008244 1.5e-86 324.7 659 33.5
Hma1.2p1_0546F.1_g176200 Hydrangea macrophylla HOM05D006685 ORTHO05D008244 1.9e-86 324.3 571 36.1
Gorai.008G072600 Gossypium raimondii HOM05D006685 ORTHO05D008244 2.5e-86 323.9 656 33.8
DCAR_025691 Daucus carota HOM05D006685 ORTHO05D008244 7.2e-86 322.4 669 32.0
Cc07_g05580 Coffea canephora HOM05D006685 ORTHO05D008244 1.6e-85 321.2 674 32.2
Sc03g0001280 Simmondsia chinensis HOM05D006685 ORTHO05D008244 2.3e-84 317.4 665 33.1
CARHR159940 Cardamine hirsuta HOM05D006685 ORTHO05D008244 1.2e-83 315.1 639 33.6
Nitab4.5_0001014g0040 Nicotiana tabacum HOM05D006685 ORTHO05D008244 2.6e-83 313.9 672 33.5
PSO541G3044 Papaver somniferum HOM05D006685 ORTHO05D008244 1.7e-82 311.2 667 32.7
vmacro05297 Vaccinium macrocarpon HOM05D006685 ORTHO05D008244 1.4e-81 308.1 662 32.2
AL5G30586 Arabidopsis lyrata HOM05D006685 ORTHO05D008244 1.8e-81 307.8 651 33.2
Solyc02g090260.3 Solanum lycopersicum HOM05D006685 ORTHO05D008244 2.4e-81 307.4 657 32.4
Sopen02g034940 Solanum pennellii HOM05D006685 ORTHO05D008244 3.5e-80 303.5 671 32.3
Migut.H00483 Erythranthe guttata HOM05D006685 ORTHO05D008244 5.9e-80 302.8 652 32.4
A01p24130 Brassica napus HOM05D006685 ORTHO05D008244 7.8e-80 302.4 609 33.8
AT3G50430 Arabidopsis thaliana HOM05D006685 ORTHO05D008244 1.3e-79 301.6 648 32.4
BcaB05g23218 Brassica carinata HOM05D006685 ORTHO05D008244 1.3e-79 301.6 610 33.9
Nn5g29383 Nelumbo nucifera HOM05D006685 ORTHO05D008244 1.7e-79 301.2 567 33.5
MELO3C020890.2 Cucumis melo HOM05D006685 ORTHO05D008244 2.9e-79 300.4 709 31.3
Sp5g11730 Schrenkiella parvula HOM05D006685 ORTHO05D008244 6.6e-79 299.3 645 32.7
BraA01t02325Z Brassica rapa HOM05D006685 ORTHO05D008244 8.6e-79 298.9 614 33.6
Thhalv10010194m.g Eutrema salsugineum HOM05D006685 ORTHO05D008244 9.5e-78 295.4 636 32.1
SalBow1G5517 Salvia bowleyana HOM05D006685 ORTHO05D008244 3.6e-77 293.5 666 31.2
Haze_15195 Corylus avellana HOM05D006685 ORTHO05D008244 1.0e-76 292.0 641 33.2
PGSC0003DMG402010073 Solanum tuberosum HOM05D006685 ORTHO05D008244 1.8e-76 291.2 669 32.7
Cpa.g.sc76.25 Carica papaya HOM05D006685 ORTHO05D008244 4.0e-76 290.0 413 38.7
Nitab4.5_0000108g0340 Nicotiana tabacum HOM05D006685 ORTHO05D008244 5.2e-76 289.7 692 31.4
C01p29820 Brassica napus HOM05D006685 ORTHO05D008244 8.9e-76 288.9 621 32.7
BolC1t02922H Brassica oleracea HOM05D006685 ORTHO05D008244 2.6e-75 287.3 621 32.7
HanXRQChr12g0378291 Helianthus annuus HOM05D006685 ORTHO05D008244 4.4e-75 286.6 640 31.7
CAN.G836.36 Capsicum annuum HOM05D006685 ORTHO05D008244 1.7e-74 284.6 672 32.7
Aa31LG4G18660 Aethionema arabicum HOM05D006685 ORTHO05D008244 2.7e-72 277.3 678 30.8
ECA246G1174 Erigeron canadensis HOM05D006685 ORTHO05D008244 2.7e-72 277.3 628 33.1
PGR119G2375 Punica granatum HOM05D006685 ORTHO05D008244 6.0e-72 276.2 661 32.1
MBI16_g19900_MAGBIO Magnolia biondii HOM05D006685 ORTHO05D008244 1.6e-69 268.1 650 30.5
THA.LOC104821263 Tarenaya hassleriana HOM05D006685 ORTHO05D008244 4.0e-68 263.5 559 33.3
Eucgr.I01015 Eucalyptus grandis HOM05D006685 ORTHO05D008244 1.7e-66 258.1 574 32.6
Peaxi162Scf00993g00018 Petunia axillaris HOM05D006685 ORTHO05D008244 2.4e-65 254.2 588 31.8
Lsat_1_v5_gn_3_92360 Lactuca sativa HOM05D006685 ORTHO05D008244 5.1e-63 246.5 615 32.5
BcaC09g50030 Brassica carinata HOM05D006685 ORTHO05D008244 1.5e-62 245.0 531 31.5
Carub.0005s1677 Capsella rubella HOM05D006685 ORTHO05D008244 3.1e-60 237.3 479 31.9
SGA_v2.0_scaffold204G41611 Striga asiatica HOM05D006685 ORTHO05D008244 1.3e-58 231.9 626 29.1
ATR0733G107 Amborella trichopoda HOM05D006685 ORTHO05D008244 4.9e-58 229.9 699 28.3
CSS0022206 Camellia sinensis var. sinensis HOM05D006685 ORTHO05D008244 1.6e-56 224.9 316 38.9
AUR62001974 Chenopodium quinoa HOM05D006685 ORTHO05D008244 4.0e-52 210.3 596 29.5
Ah.02g123950 Amaranthus hybridus HOM05D005480 ORTHO05D006735 1.5e-51 208.4 558 29.6
HPP92_017771 Vanilla planifolia HOM05D006685 ORTHO05D008244 1.3e-50 205.3 613 28.9
AUR62003829 Chenopodium quinoa HOM05D006685 ORTHO05D008244 2.2e-50 204.5 411 34.1
MD06G1092200 Malus domestica HOM05D006685 ORTHO05D008244 4.6e-48 196.8 324 39.2
Zm00001eb209640 Zea mays HOM05D006685 ORTHO05D008244 3.6e-45 187.2 667 27.4
Zm00001eb209650 Zea mays HOM05D006685 ORTHO05D008244 3.6e-45 187.2 667 27.4
PGR044G2727 Punica granatum HOM05D006685 ORTHO05D008244 3.4e-43 180.6 400 32.0
Os07g0120700 Oryza sativa ssp. japonica HOM05D006685 ORTHO05D008244 3.9e-39 167.2 700 25.6
Oeu003945.1 Olea europaea HOM05D006685 ORTHO05D008244 2.5e-38 164.5 334 33.8
GSVIVG01036190001 Vitis vinifera HOM05D006685 ORTHO05D008244 3.9e-31 140.6 221 36.7
unitig_749.g14219 Utricularia gibba HOM05D006685 ORTHO05D008244 7.9e-24 116.3 369 28.7
CDE07G0460 Ceratophyllum demersum HOM05D006685 ORTHO05D008244 7.4e-22 109.8 310 31.0
GSVIVG01002723001 Vitis vinifera HOM05D006685 ORTHO05D008244 4.8e-21 107.1 126 50.0
FAN28G0437 Fragaria x ananassa HOM05D006685 ORTHO05D008244 1.1e-17 95.9 146 43.8
SEGI_02281 Sequoiadendron giganteum HOM05D006685 ORTHO05D008244 3.5e-16 90.9 386 23.3
CDE07G1850 Ceratophyllum demersum HOM05D006685 ORTHO05D008244 9.0e-12 76.3 216 26.9
ATR0733G174 Amborella trichopoda HOM05D006685 ORTHO05D008244 1.5e-11 75.5 138 39.1
SEGI_38886 Sequoiadendron giganteum HOM05D006685 ORTHO05D008244 1.2e-08 65.9 169 29.6
unitig_78.g29629 Utricularia gibba HOM05D006685 ORTHO05D008244 1.8e-07 62.0 88 39.8
arahy.Tifrunner.gnm1.ann1.6LA5S9 Arachis hypogaea HOM05D002494 ORTHO05D002673 1.5e-06 58.9 30 90.0
arahy.Tifrunner.gnm1.ann1.G2N9P3 Arachis hypogaea HOM05D000296 ORTHO05D008244 1.5e-06 58.9 30 90.0


User provided reference genes

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