Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_22228_v3 Cicer arietinum L. HOM05D005053 ORTHO05D006206 2.6e-109 398.7 195 100.0
Ca_22210_v3 Cicer arietinum L. HOM05D005053 ORTHO05D006206 1.7e-108 396.0 193 100.0
Medtr8g079240 Medicago truncatula HOM05D005053 ORTHO05D006206 1.1e-104 383.3 193 95.3
Glyma.17G180900 Glycine max HOM05D005053 ORTHO05D006206 4.4e-104 381.3 193 94.8
Phvul.003G248000 Phaseolus vulgaris HOM05D005053 ORTHO05D006206 3.7e-103 378.3 193 93.8
Lj4g0026236 Lotus japonicus HOM05D005053 ORTHO05D006206 2.4e-102 375.6 193 92.2
VMungo0251G0766 Vigna mungo HOM05D005053 ORTHO05D006206 4.1e-102 374.8 193 94.3
Lalb_Chr09g0333681 Lupinus albus HOM05D005053 ORTHO05D006206 2.6e-101 372.1 193 90.7
arahy.Tifrunner.gnm1.ann1.VE46QQ Arachis hypogaea HOM05D005053 ORTHO05D006206 1.0e-100 370.2 193 91.7
arahy.Tifrunner.gnm1.ann1.IMYE37 Arachis hypogaea HOM05D005053 ORTHO05D006206 6.5e-100 367.5 193 90.7
PGR102G2816 Punica granatum HOM05D005053 ORTHO05D006206 5.9e-93 344.4 193 83.9
RcHm_v2.0_Chr2g0104011 Rosa chinensis HOM05D005053 ORTHO05D006206 6.5e-92 340.9 194 83.0
Aqoxy6G00906 Aquilegia oxysepala HOM05D005053 ORTHO05D006206 1.1e-91 340.1 194 84.0
MD02G1163200 Malus domestica HOM05D005053 ORTHO05D006206 4.2e-91 338.2 194 82.5
AUR62003832 Chenopodium quinoa HOM05D005053 ORTHO05D006206 5.5e-91 337.8 194 84.0
EL10Ac6g15144 Beta vulgaris HOM05D005053 ORTHO05D006206 9.4e-91 337.0 193 83.9
Haze_15460 Corylus avellana HOM05D005053 ORTHO05D006206 1.2e-90 336.7 195 82.1
QL06p043337 Quercus lobata HOM05D005053 ORTHO05D006206 2.1e-90 335.9 194 84.5
Cfa003962 Carpinus fangiana HOM05D005053 ORTHO05D006206 3.6e-90 335.1 195 83.1
AUR62001971 Chenopodium quinoa HOM05D005053 ORTHO05D006206 6.1e-90 334.3 193 83.4
Atru.chr3.440 Acer truncatum HOM05D005053 ORTHO05D006206 1.0e-89 333.6 194 83.0
Gohir.A12G069100 Gossypium hirsutum HOM05D005053 ORTHO05D006206 1.4e-89 333.2 195 82.6
TAR628G0491 Trochodendron aralioides HOM05D005053 ORTHO05D006206 2.3e-89 332.4 195 82.1
Gohir.D12G090200 Gossypium hirsutum HOM05D005053 ORTHO05D006206 3.0e-89 332.0 195 81.5
CSS0024932 Camellia sinensis var. sinensis HOM05D005053 ORTHO05D006206 6.7e-89 330.9 193 82.4
FvH4_1g14960 Fragaria vesca HOM05D005053 ORTHO05D006206 6.7e-89 330.9 195 82.1
Hund13583 Selenicereus undatus HOM05D005053 ORTHO05D006206 6.7e-89 330.9 193 80.8
FAN23G1215 Fragaria x ananassa HOM05D005053 ORTHO05D006206 1.2e-88 330.1 195 81.5
Gorai.008G072800 Gossypium raimondii HOM05D005053 ORTHO05D006206 1.2e-88 330.1 194 82.0
FAN26G1713 Fragaria x ananassa HOM05D005053 ORTHO05D006206 1.5e-88 329.7 195 81.5
Manes.13G129200 Manihot esculenta HOM05D005053 ORTHO05D006206 1.5e-88 329.7 194 82.5
GSVIVG01005060001 Vitis vinifera HOM05D005053 ORTHO05D006206 1.5e-88 329.7 194 82.5
COL.COLO4_11341 Corchorus olitorius HOM05D005053 ORTHO05D006206 3.3e-88 328.6 194 82.5
Thecc.01G049700 Theobroma cacao HOM05D005053 ORTHO05D006206 3.3e-88 328.6 195 82.6
vmacro17912 Vaccinium macrocarpon HOM05D005053 ORTHO05D006206 3.3e-88 328.6 194 81.4
Actinidia12070 Actinidia chinensis HOM05D005053 ORTHO05D006206 5.7e-88 327.8 193 83.4
Sc03g0001310 Simmondsia chinensis HOM05D005053 ORTHO05D006206 5.7e-88 327.8 193 80.3
FAN19G0163 Fragaria x ananassa HOM05D005053 ORTHO05D006206 7.5e-88 327.4 195 81.0
Duzib264G0045 Durio zibethinus HOM05D005053 ORTHO05D006206 9.7e-88 327.0 195 81.0
Cpa.g.sc6.408 Carica papaya HOM05D005053 ORTHO05D006206 1.3e-87 326.6 194 81.4
Cc07_g05640 Coffea canephora HOM05D005053 ORTHO05D006206 1.3e-87 326.6 193 82.4
Dinv29944 Davidia involucrata HOM05D005053 ORTHO05D006206 1.7e-87 326.2 196 81.1
MD15G1276200 Malus domestica HOM05D005053 ORTHO05D006206 4.8e-87 324.7 194 80.4
FAN28G1734 Fragaria x ananassa HOM05D005053 ORTHO05D006206 8.2e-87 323.9 196 80.6
Actinidia36514 Actinidia chinensis HOM05D005053 ORTHO05D006206 1.8e-86 322.8 194 83.0
ClCG01G016600 Citrullus lanatus HOM05D005053 ORTHO05D006206 1.8e-86 322.8 195 78.5
TWI53G1273 Tripterygium wilfordii HOM05D005053 ORTHO05D006206 2.4e-86 322.4 194 79.4
MELO3C007534.2 Cucumis melo HOM05D005053 ORTHO05D006206 3.1e-86 322.0 195 77.9
Eucgr.H01988 Eucalyptus grandis HOM05D005053 ORTHO05D006206 3.1e-86 322.0 193 79.3
Duzib264G0685 Durio zibethinus HOM05D005053 ORTHO05D006206 4.1e-86 321.6 195 80.0
TAR376G0500 Trochodendron aralioides HOM05D005053 ORTHO05D006206 4.1e-86 321.6 194 80.4
CsaV3_6G042980 Cucumis sativus L. HOM05D005053 ORTHO05D006206 7.0e-86 320.9 195 77.4
Hma1.2p1_0687F.1_g203520 Hydrangea macrophylla HOM05D005053 ORTHO05D006206 7.0e-86 320.9 193 80.3
TWI09G0689 Tripterygium wilfordii HOM05D005053 ORTHO05D006206 1.2e-85 320.1 194 79.4
HanXRQChr14g0448331 Helianthus annuus HOM05D005053 ORTHO05D006206 2.7e-85 318.9 193 78.8
PSO675G4006 Papaver somniferum HOM05D005053 ORTHO05D006206 4.5e-85 318.2 194 79.4
Lsat_1_v5_gn_2_86920 Lactuca sativa HOM05D005053 ORTHO05D006206 2.2e-84 315.8 193 77.7
PSO541G4895 Papaver somniferum HOM05D005053 ORTHO05D006206 2.2e-84 315.8 194 78.9
Migut.H00475 Erythranthe guttata HOM05D005053 ORTHO05D006206 2.9e-84 315.5 193 79.3
Sed0021889 Sechium edule HOM05D005053 ORTHO05D006206 2.9e-84 315.5 194 76.8
THA.LOC104819229 Tarenaya hassleriana HOM05D005053 ORTHO05D006206 2.9e-84 315.5 194 78.9
Ciclev10026393m.g Citrus clementina HOM05D005053 ORTHO05D006206 3.8e-84 315.1 212 75.5
HanXRQChr07g0199901 Helianthus annuus HOM05D005053 ORTHO05D006206 5.0e-84 314.7 193 77.7
ECA238G1636 Erigeron canadensis HOM05D005053 ORTHO05D006206 2.5e-83 312.4 193 77.2
Potri.007G037800 Populus trichocarpa HOM05D005053 ORTHO05D006206 2.5e-83 312.4 194 79.9
Duzib147G0596 Durio zibethinus HOM05D005053 ORTHO05D006206 3.2e-83 312.0 195 79.0
Nitab4.5_0000806g0140 Nicotiana tabacum HOM05D005053 ORTHO05D006206 5.5e-83 311.2 192 77.6
CAN.G470.7 Capsicum annuum HOM05D005053 ORTHO05D006206 1.6e-82 309.7 192 76.6
Oeu004887.1 Olea europaea HOM05D005053 ORTHO05D006206 2.1e-82 309.3 193 79.8
Solyc02g065180.3 Solanum lycopersicum HOM05D005053 ORTHO05D006206 4.7e-82 308.1 192 77.6
Sopen02g015310 Solanum pennellii HOM05D005053 ORTHO05D006206 4.7e-82 308.1 192 77.6
Carub.0008s2757 Capsella rubella HOM05D005053 ORTHO05D006206 8.0e-82 307.4 194 77.8
Peaxi162Scf00049g01010 Petunia axillaris HOM05D005053 ORTHO05D006206 8.0e-82 307.4 194 76.3
AL8G44450 Arabidopsis lyrata HOM05D005053 ORTHO05D006206 1.0e-81 307.0 194 78.4
CARHR280750 Cardamine hirsuta HOM05D005053 ORTHO05D006206 3.0e-81 305.4 194 77.8
Nitab4.5_0009901g0010 Nicotiana tabacum HOM05D005053 ORTHO05D006206 5.2e-81 304.7 201 74.1
Nn6g32115 Nelumbo nucifera HOM05D005053 ORTHO05D006206 8.8e-81 303.9 195 73.8
Sabra07G0034100 Salix brachista HOM05D005053 ORTHO05D006206 8.8e-81 303.9 195 77.9
THA.LOC104821262 Tarenaya hassleriana HOM05D005053 ORTHO05D006206 2.0e-80 302.8 194 75.3
AT5G66930 Arabidopsis thaliana HOM05D005053 ORTHO05D006206 3.4e-80 302.0 194 77.8
Aa31LG1G15480 Aethionema arabicum HOM05D005053 ORTHO05D006206 5.7e-80 301.2 194 76.8
Nn5g29376 Nelumbo nucifera HOM05D005053 ORTHO05D006206 7.5e-80 300.8 194 76.3
CiPaw.01G025900 Carya illinoinensis HOM05D005053 ORTHO05D006206 1.3e-79 300.1 170 84.1
Peaxi162Scf00993g00120 Petunia axillaris HOM05D005053 ORTHO05D006206 1.7e-79 299.7 194 72.7
Sp2g29730 Schrenkiella parvula HOM05D005053 ORTHO05D006206 1.7e-79 299.7 194 76.8
unitig_736.g22369 Utricularia gibba HOM05D005053 ORTHO05D006206 1.7e-79 299.7 195 75.9
Rhsim08G0104900 Rhododendron simsii HOM05D005053 ORTHO05D006206 2.2e-79 299.3 240 65.8
BcaB04g20086 Brassica carinata HOM05D005053 ORTHO05D006206 2.8e-79 298.9 194 75.3
MSTRG.15402 Avicennia marina HOM05D005053 ORTHO05D006206 1.4e-78 296.6 202 73.3
MBI16_g19902_MAGBIO Magnolia biondii HOM05D005053 ORTHO05D006206 1.4e-78 296.6 183 78.7
SGA_v2.0_scaffold204G41608 Striga asiatica HOM05D005053 ORTHO05D006206 1.3e-76 290.0 194 73.7
SGA_v2.0_scaffold27G11440 Striga asiatica HOM05D005053 ORTHO05D006206 5.0e-76 288.1 194 73.2
BraA09t36613Z Brassica rapa HOM05D005053 ORTHO05D006206 8.6e-76 287.3 194 73.2
BcaC04g23174 Brassica carinata HOM05D005053 ORTHO05D006206 1.9e-75 286.2 195 74.4
C09p11390 Brassica napus HOM05D005053 ORTHO05D006206 1.9e-75 286.2 195 74.4
A09p09640 Brassica napus HOM05D005053 ORTHO05D006206 2.5e-75 285.8 194 73.2
SEGI_13826 Sequoiadendron giganteum HOM05D005053 ORTHO05D006206 5.5e-75 284.6 194 70.6
Thhalv10005270m.g Eutrema salsugineum HOM05D005053 ORTHO05D006206 7.2e-75 284.3 186 75.3
BcaB02g09970 Brassica carinata HOM05D005053 ORTHO05D006206 2.8e-74 282.3 194 74.2
BcaC06g34767 Brassica carinata HOM05D005053 ORTHO05D006206 2.8e-74 282.3 194 72.7
C07p24820 Brassica napus HOM05D005053 ORTHO05D006206 2.8e-74 282.3 194 72.7
BolC9t54027H Brassica oleracea HOM05D005053 ORTHO05D006206 2.8e-74 282.3 196 72.4
BraA07t29424Z Brassica rapa HOM05D005053 ORTHO05D006206 1.8e-73 279.6 194 72.2
Ah.02g124120 Amaranthus hybridus HOM05D005053 ORTHO05D006206 4.0e-73 278.5 184 75.0
RhsimUnG0070600 Rhododendron simsii HOM05D005053 ORTHO05D006206 4.0e-73 278.5 229 64.6
ATR0225G009 Amborella trichopoda HOM05D005053 ORTHO05D006206 5.2e-73 278.1 195 69.2
A07p16970 Brassica napus HOM05D005053 ORTHO05D006206 5.2e-73 278.1 194 71.6
DCAR_025697 Daucus carota HOM05D005053 ORTHO05D006206 1.7e-71 273.1 171 78.4
Dinv39902 Davidia involucrata HOM05D005053 ORTHO05D006206 2.8e-71 272.3 171 74.9
Lj7A44T18 Lonicera japonica HOM05D005053 ORTHO05D006206 6.3e-71 271.2 178 74.7
HPP92_024294 Vanilla planifolia HOM05D005053 ORTHO05D006206 3.1e-70 268.9 194 69.1
HPP92_024303 Vanilla planifolia HOM05D005053 ORTHO05D006206 3.1e-70 268.9 194 69.1
CiPaw.02G011700 Carya illinoinensis HOM05D005053 ORTHO05D006206 2.3e-68 262.7 195 68.7
PGSC0003DMG400010070 Solanum tuberosum HOM05D005053 ORTHO05D006206 6.6e-68 261.2 192 65.6
Psat4g088960 Pisum sativum HOM05D005053 ORTHO05D006206 1.5e-67 260.0 131 94.7
Mapoly0011s0084 Marchantia polymorpha HOM05D005053 ORTHO05D006206 1.9e-67 259.6 193 63.7
BolC7t43007H Brassica oleracea HOM05D005053 ORTHO05D006206 2.5e-67 259.2 183 71.0
Solyc02g090330.3 Solanum lycopersicum HOM05D005053 ORTHO05D006206 5.6e-67 258.1 192 64.1
Nitab4.5_0002157g0070 Nicotiana tabacum HOM05D005053 ORTHO05D006206 1.4e-65 253.4 171 71.9
Os12g0428200 Oryza sativa ssp. japonica HOM05D005053 ORTHO05D006206 1.3e-63 246.9 196 62.8
BcaC03g18393 Brassica carinata HOM05D005053 ORTHO05D006206 1.7e-63 246.5 194 63.9
C02p64670 Brassica napus HOM05D005053 ORTHO05D006206 1.7e-63 246.5 194 63.9
BolC2t12528H Brassica oleracea HOM05D005053 ORTHO05D006206 1.7e-63 246.5 194 63.9
SMO271G0126 Selaginella moellendorffii HOM05D005053 ORTHO05D006206 2.2e-63 246.1 193 59.1
Os12g0446700 Oryza sativa ssp. japonica HOM05D005053 ORTHO05D006206 2.3e-60 236.1 198 60.1
Pp3c11_5110 Physcomitrium patens HOM05D005053 ORTHO05D006206 3.0e-60 235.7 195 57.4
Zm00001eb184240 Zea mays HOM05D005053 ORTHO05D006206 6.6e-60 234.6 196 60.2
Psat4g089040 Pisum sativum HOM05D005053 ORTHO05D006206 2.1e-58 229.6 183 66.1
Prupe.7G140800 Prunus persica HOM05D005053 ORTHO05D006206 6.8e-57 224.6 137 79.6
AagrBONN_evm.TU.Sc2ySwM_344.1822 Anthoceros agrestis HOM05D005053 ORTHO05D006206 1.0e-52 210.7 196 54.1
CBR_g23008 Chara braunii HOM05D005053 ORTHO05D006206 2.3e-52 209.5 193 51.8
Ah.03g144090 Amaranthus hybridus HOM05D005053 ORTHO05D006206 1.5e-51 206.8 169 66.3
AagrBONN_evm.TU.Sc2ySwM_344.1821 Anthoceros agrestis HOM05D005053 ORTHO05D006206 3.3e-51 205.7 169 59.2
TPR.G672 Trifolium pratense HOM05D005053 ORTHO05D006206 2.0e-48 196.4 99 96.0
TPR.G40637 Trifolium pratense HOM05D005053 ORTHO05D006206 3.7e-47 192.2 93 98.9
CDE02G0556 Ceratophyllum demersum HOM05D005053 ORTHO05D006206 1.2e-45 187.2 175 54.3
Sopen02g035010 Solanum pennellii HOM05D005053 ORTHO05D006206 6.6e-44 181.4 140 62.9
AagrBONN_evm.TU.Sc2ySwM_369.468 Anthoceros agrestis HOM05D000050 ORTHO05D000771 6.4e-39 164.9 193 45.1
MCO07G250 Micromonas commoda HOM05D005053 ORTHO05D006206 6.6e-36 154.8 200 41.5
Cre07.g334700 Chlamydomonas reinhardtii HOM05D005053 ORTHO05D006206 1.2e-34 150.6 224 38.8
SGA_v2.0_scaffold15G07238 Striga asiatica HOM05D005053 ORTHO05D006206 3.6e-34 149.1 139 56.1
FAN19G1388 Fragaria x ananassa HOM05D005053 ORTHO05D006206 1.1e-30 137.5 84 77.4
Zm00001eb184160 Zea mays HOM05D005053 ORTHO05D006206 3.5e-29 132.5 84 72.6
Nitab4.5_0003750g0060 Nicotiana tabacum HOM05D005053 ORTHO05D006206 1.7e-28 130.2 142 49.3
AUR62028910 Chenopodium quinoa HOM05D005053 ORTHO05D006206 1.4e-25 120.6 92 64.1
PRCOL_00006110 Prasinoderma coloniale HOM05D005053 ORTHO05D006206 3.8e-23 112.5 196 36.7
Ciclev10027037m.g Citrus clementina HOM05D005053 ORTHO05D006206 8.7e-20 101.3 73 74.0
CAN.G836.41 Capsicum annuum HOM05D005053 ORTHO05D024763 3.9e-12 75.9 134 39.6
Cfa024505 Carpinus fangiana HOM05D005053 ORTHO05D124968 3.1e-09 66.2 204 25.0


User provided reference genes

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