Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_22225_v3 Cicer arietinum L. HOM05D001975 ORTHO05D002436 8.9e-27 122.9 62 100.0
Medtr8g078880 Medicago truncatula HOM05D001975 ORTHO05D002436 1.8e-24 115.2 61 93.4
TPR.G11244 Trifolium pratense HOM05D001975 ORTHO05D002436 5.4e-24 113.6 61 90.2
Psat4g179320 Pisum sativum HOM05D001975 ORTHO05D002436 1.4e-19 99.0 61 80.3
Lalb_Chr05g0227141 Lupinus albus HOM05D001975 ORTHO05D002436 2.2e-17 91.7 61 73.8
Lj4g0022775 Lotus japonicus HOM05D001975 ORTHO05D002436 8.3e-17 89.7 61 68.9
Glyma.02G061300 Glycine max HOM05D001975 ORTHO05D002436 1.9e-16 88.6 61 70.5
Glyma.16G143700 Glycine max HOM05D001975 ORTHO05D002436 3.5e-15 84.3 61 67.2
COL.COLO4_22175 Corchorus olitorius HOM05D001975 ORTHO05D002436 1.0e-14 82.8 62 69.4
Thecc.01G045400 Theobroma cacao HOM05D001975 ORTHO05D002436 1.0e-14 82.8 61 68.9
TWI09G0311 Tripterygium wilfordii HOM05D001975 ORTHO05D002436 1.7e-14 82.0 61 68.9
Sc16g0001200 Simmondsia chinensis HOM05D001975 ORTHO05D002436 3.0e-14 81.3 61 63.9
Cc07_g05360 Coffea canephora HOM05D001975 ORTHO05D002436 3.9e-14 80.9 63 66.7
PGSC0003DMG400002745 Solanum tuberosum HOM05D001975 ORTHO05D002436 3.9e-14 80.9 61 70.5
Cpa.g.sc15.57 Carica papaya HOM05D001975 ORTHO05D002436 1.1e-13 79.3 61 67.2
CANSAT01G3111 Cannabis sativa HOM05D001975 ORTHO05D002436 1.9e-13 78.6 61 65.6
THA.LOC104807566 Tarenaya hassleriana HOM05D001975 ORTHO05D002436 1.9e-13 78.6 61 65.6
Haze_15162 Corylus avellana HOM05D001975 ORTHO05D002436 3.3e-13 77.8 61 63.9
Duzib187G0124 Durio zibethinus HOM05D001975 ORTHO05D002436 3.3e-13 77.8 61 63.9
Ciclev10026511m.g Citrus clementina HOM05D001975 ORTHO05D002436 5.6e-13 77.0 62 67.7
Sopen02g015590 Solanum pennellii HOM05D001975 ORTHO05D002436 5.6e-13 77.0 61 67.2
Phvul.003G249700 Phaseolus vulgaris HOM05D001975 ORTHO05D002436 9.5e-13 76.3 61 57.4
Gohir.A11G044900 Gossypium hirsutum HOM05D001975 ORTHO05D002436 1.2e-12 75.9 61 63.9
Gohir.D11G048400 Gossypium hirsutum HOM05D001975 ORTHO05D002436 1.2e-12 75.9 61 63.9
Gorai.007G051900 Gossypium raimondii HOM05D001975 ORTHO05D002436 1.2e-12 75.9 61 63.9
CiPaw.01G029500 Carya illinoinensis HOM05D001975 ORTHO05D002436 1.6e-12 75.5 61 62.3
Solyc02g065380.3 Solanum lycopersicum HOM05D001975 ORTHO05D002436 1.6e-12 75.5 61 65.6
VMungo0251G2331 Vigna mungo HOM05D001975 ORTHO05D002436 2.1e-12 75.1 61 60.7
CAN.G93.3 Capsicum annuum HOM05D001975 ORTHO05D002436 2.8e-12 74.7 61 65.6
Dinv26779 Davidia involucrata HOM05D001975 ORTHO05D002436 2.8e-12 74.7 62 64.5
Nitab4.5_0000090g0130 Nicotiana tabacum HOM05D001975 ORTHO05D002436 2.8e-12 74.7 61 62.3
Nitab4.5_0002126g0080 Nicotiana tabacum HOM05D001975 ORTHO05D002436 2.8e-12 74.7 61 62.3
Nn5g29433 Nelumbo nucifera HOM05D001975 ORTHO05D002436 3.6e-12 74.3 61 63.9
vmacro17878 Vaccinium macrocarpon HOM05D003002 ORTHO05D003583 3.6e-12 74.3 61 57.4
Cfa004235 Carpinus fangiana HOM05D001975 ORTHO05D002436 4.7e-12 73.9 61 59.0
CiPaw.02G013300 Carya illinoinensis HOM05D001975 ORTHO05D002436 4.7e-12 73.9 61 60.7
Oeu032915.1 Olea europaea HOM05D001975 ORTHO05D002436 4.7e-12 73.9 61 62.3
Prupe.7G145800 Prunus persica HOM05D001975 ORTHO05D002436 4.7e-12 73.9 62 62.9
SGA_v2.0_scaffold204G41630 Striga asiatica HOM05D001975 ORTHO05D002436 4.7e-12 73.9 61 62.3
GSVIVG01003772001 Vitis vinifera HOM05D001975 ORTHO05D002436 4.7e-12 73.9 61 62.3
ClCG01G016380 Citrullus lanatus HOM05D001975 ORTHO05D002436 6.2e-12 73.6 61 59.0
Hma1.2p1_0261F.1_g104900 Hydrangea macrophylla HOM05D001975 ORTHO05D002436 6.2e-12 73.6 61 59.0
TAR628G0364 Trochodendron aralioides HOM05D001975 ORTHO05D002436 8.1e-12 73.2 61 63.9
TAR628G0941 Trochodendron aralioides HOM05D001975 ORTHO05D002436 8.1e-12 73.2 61 63.9
MD15G1273000 Malus domestica HOM05D001975 ORTHO05D002436 1.1e-11 72.8 62 59.7
Manes.13G132500 Manihot esculenta HOM05D001975 ORTHO05D002436 1.1e-11 72.8 61 62.3
CSS0010024 Camellia sinensis var. sinensis HOM05D001975 ORTHO05D002436 1.4e-11 72.4 62 61.3
Hma1.2p1_0739F.1_g211260 Hydrangea macrophylla HOM05D001975 ORTHO05D002436 1.4e-11 72.4 61 60.7
Lj4C135T10 Lonicera japonica HOM05D001975 ORTHO05D002436 1.4e-11 72.4 55 61.8
Dinv39926 Davidia involucrata HOM05D001975 ORTHO05D002436 2.3e-11 71.6 62 62.9
FAN23G2823 Fragaria x ananassa HOM05D001975 ORTHO05D002436 2.3e-11 71.6 57 61.4
TAR381G0758 Trochodendron aralioides HOM05D001821 ORTHO05D001778 2.3e-11 71.6 61 62.3
Oeu043820.1 Olea europaea HOM05D006488 ORTHO05D007256 3.1e-11 71.2 61 63.9
Potri.007G033801 Populus trichocarpa HOM05D001975 ORTHO05D002436 3.1e-11 71.2 62 62.9
QL06p044294 Quercus lobata HOM05D001975 ORTHO05D002436 3.1e-11 71.2 61 59.0
FAN19G0813 Fragaria x ananassa HOM05D001975 ORTHO05D002436 4.0e-11 70.9 62 61.3
FAN28G2057 Fragaria x ananassa HOM05D001975 ORTHO05D002436 4.0e-11 70.9 62 59.7
Aqoxy6G00961 Aquilegia oxysepala HOM05D001975 ORTHO05D002436 5.2e-11 70.5 55 61.8
CSS0029243 Camellia sinensis var. sinensis HOM05D001975 ORTHO05D002436 5.2e-11 70.5 56 62.5
SGA_v2.0_scaffold15G07200 Striga asiatica HOM05D001975 ORTHO05D002436 5.2e-11 70.5 61 59.0
MELO3C007508.2 Cucumis melo HOM05D001975 ORTHO05D002436 6.8e-11 70.1 61 55.7
CsaV3_6G042690 Cucumis sativus L. HOM05D001975 ORTHO05D002436 6.8e-11 70.1 61 55.7
Migut.H00504 Erythranthe guttata HOM05D001975 ORTHO05D002436 8.9e-11 69.7 61 59.0
FvH4_1g14460 Fragaria vesca HOM05D001975 ORTHO05D002436 8.9e-11 69.7 62 58.1
THA.LOC104826725 Tarenaya hassleriana HOM05D001975 ORTHO05D002436 8.9e-11 69.7 61 59.0
DCAR_010947 Daucus carota HOM05D001975 ORTHO05D002436 1.2e-10 69.3 55 60.0
Sabra07G0029500 Salix brachista HOM05D001975 ORTHO05D002436 1.2e-10 69.3 62 59.7
Rhsim08G0109600 Rhododendron simsii HOM05D001975 ORTHO05D002436 1.5e-10 68.9 61 57.4
AT3G50830 Arabidopsis thaliana HOM05D001975 ORTHO05D002436 2.0e-10 68.6 62 61.3
FAN26G0045 Fragaria x ananassa HOM05D001975 ORTHO05D002436 2.0e-10 68.6 62 58.1
AL5G31110 Arabidopsis lyrata HOM05D001975 ORTHO05D002436 2.6e-10 68.2 63 60.3
Dinv17709 Davidia involucrata HOM05D001975 ORTHO05D002436 4.4e-10 67.4 62 59.7
Dinv40999 Davidia involucrata HOM05D001975 ORTHO05D002436 4.4e-10 67.4 62 59.7
Thhalv10010733m.g Eutrema salsugineum HOM05D001975 ORTHO05D002436 4.4e-10 67.4 61 57.4
RcHm_v2.0_Chr2g0103221 Rosa chinensis HOM05D001975 ORTHO05D002436 4.4e-10 67.4 62 58.1
Peaxi162Scf00016g01135 Petunia axillaris HOM05D001975 ORTHO05D002436 5.8e-10 67.0 56 60.7
A03p47960 Brassica napus HOM05D001975 ORTHO05D002436 7.5e-10 66.6 61 55.7
BraA03t13904Z Brassica rapa HOM05D001975 ORTHO05D002436 7.5e-10 66.6 61 55.7
Eucgr.I01024 Eucalyptus grandis HOM05D001975 ORTHO05D002436 7.5e-10 66.6 61 57.4
Nitab4.5_0003816g0100 Nicotiana tabacum HOM05D001975 ORTHO05D002436 9.8e-10 66.2 59 61.0
BcaC06g33325 Brassica carinata HOM05D001975 ORTHO05D002436 1.3e-09 65.9 61 54.1
C07p45970 Brassica napus HOM05D001975 ORTHO05D002436 1.3e-09 65.9 61 54.1
BolC7t45116H Brassica oleracea HOM05D001975 ORTHO05D002436 1.3e-09 65.9 61 54.1
Nitab4.5_0003281g0090 Nicotiana tabacum HOM05D001975 ORTHO05D002436 1.3e-09 65.9 56 62.5
Sopen01g051370 Solanum pennellii HOM05D001975 ORTHO05D002436 1.3e-09 65.9 59 61.0
CAN.G322.94 Capsicum annuum HOM05D001975 ORTHO05D002436 1.7e-09 65.5 59 59.3
PSO170G6758 Papaver somniferum HOM05D001975 ORTHO05D002436 1.7e-09 65.5 66 56.1
PSO700G0373 Papaver somniferum HOM05D001975 ORTHO05D002436 1.7e-09 65.5 66 56.1
Aa31LG4G18950 Aethionema arabicum HOM05D001975 ORTHO05D002436 2.2e-09 65.1 61 57.4
BcaC06g33078 Brassica carinata HOM05D001975 ORTHO05D002436 2.2e-09 65.1 61 52.5
Peaxi162Scf00019g02116 Petunia axillaris HOM05D001975 ORTHO05D002436 2.2e-09 65.1 56 64.3
Sed0007426 Sechium edule HOM05D001975 ORTHO05D002436 2.2e-09 65.1 61 54.1
BcaB01g00577 Brassica carinata HOM05D001975 ORTHO05D002436 2.9e-09 64.7 61 54.1
PGSC0003DMG400025160 Solanum tuberosum HOM05D001975 ORTHO05D002436 2.9e-09 64.7 59 61.0
BcaC07g39547 Brassica carinata HOM05D001975 ORTHO05D002436 3.7e-09 64.3 61 54.1
C08p26030 Brassica napus HOM05D001975 ORTHO05D002436 3.7e-09 64.3 61 54.1
BolC8t50221H Brassica oleracea HOM05D001975 ORTHO05D002436 3.7e-09 64.3 61 54.1
Duzib248G1406 Durio zibethinus HOM05D001975 ORTHO05D002436 3.7e-09 64.3 54 61.1
Manes.12G097300 Manihot esculenta HOM05D001975 ORTHO05D002436 3.7e-09 64.3 61 55.7
BraA09t39850Z Brassica rapa HOM05D001975 ORTHO05D002436 4.9e-09 63.9 61 54.1
Sp5g11390 Schrenkiella parvula HOM05D001975 ORTHO05D002436 4.9e-09 63.9 61 54.1
A09p43930 Brassica napus HOM05D001975 ORTHO05D002436 6.4e-09 63.5 61 54.1
AL7G14020 Arabidopsis lyrata HOM05D001975 ORTHO05D002436 1.1e-08 62.8 61 55.7
BcaC01g00435 Brassica carinata HOM05D001975 ORTHO05D002436 1.1e-08 62.8 62 58.1
A08p22470 Brassica napus HOM05D001975 ORTHO05D002436 1.1e-08 62.8 62 58.1
C03p79780 Brassica napus HOM05D001975 ORTHO05D002436 1.1e-08 62.8 62 58.1
BolC3t20225H Brassica oleracea HOM05D001975 ORTHO05D002436 1.1e-08 62.8 62 58.1
BraA08t34202Z Brassica rapa HOM05D001975 ORTHO05D002436 1.1e-08 62.8 62 58.1
Thhalv10026271m.g Eutrema salsugineum HOM05D001975 ORTHO05D002436 1.1e-08 62.8 62 58.1
Oeu020619.1 Olea europaea HOM05D001975 ORTHO05D002436 1.1e-08 62.8 61 55.7
Carub.0005s1721 Capsella rubella HOM05D001975 ORTHO05D002436 1.4e-08 62.4 63 57.1
CARHR160370 Cardamine hirsuta HOM05D001975 ORTHO05D002436 1.4e-08 62.4 63 60.3
PGR119G0580 Punica granatum HOM05D001975 ORTHO05D002436 1.4e-08 62.4 62 54.8
Gohir.A04G129400 Gossypium hirsutum HOM05D001975 ORTHO05D002436 2.4e-08 61.6 56 57.1
MBI16_g31344_MAGBIO Magnolia biondii HOM05D001975 ORTHO05D002436 2.4e-08 61.6 54 61.1
Carub.0007s0341 Capsella rubella HOM05D001975 ORTHO05D002436 3.2e-08 61.2 62 56.5
CDE04G0147 Ceratophyllum demersum HOM05D001975 ORTHO05D002436 3.2e-08 61.2 56 53.6
Gohir.D04G174500 Gossypium hirsutum HOM05D001975 ORTHO05D002436 3.2e-08 61.2 56 57.1
Gorai.012G164000 Gossypium raimondii HOM05D001975 ORTHO05D002436 3.2e-08 61.2 56 57.1
THA.LOC104807567 Tarenaya hassleriana HOM05D001975 ORTHO05D002436 3.2e-08 61.2 56 57.1
TAR376G1124 Trochodendron aralioides HOM05D001975 ORTHO05D002436 3.2e-08 61.2 56 57.1
AUR62027244 Chenopodium quinoa HOM05D001975 ORTHO05D002436 7.1e-08 60.1 62 53.2
Thecc.02G029600 Theobroma cacao HOM05D001975 ORTHO05D002436 7.1e-08 60.1 55 54.5
GSVIVG01031890001 Vitis vinifera HOM05D001975 ORTHO05D002436 7.1e-08 60.1 54 57.4
AT4G37220 Arabidopsis thaliana HOM05D001975 ORTHO05D002436 9.2e-08 59.7 54 55.6
Migut.B00285 Erythranthe guttata HOM05D001975 ORTHO05D002436 9.2e-08 59.7 55 54.5
Sp7g34570 Schrenkiella parvula HOM05D001975 ORTHO05D002436 9.2e-08 59.7 62 56.5
TWI31G0188 Tripterygium wilfordii HOM05D001975 ORTHO05D002436 9.2e-08 59.7 55 54.5
Dinv28169 Davidia involucrata HOM05D011324 ORTHO05D013448 1.2e-07 59.3 54 61.1
PSO541G5693 Papaver somniferum HOM05D001975 ORTHO05D002436 1.2e-07 59.3 54 51.9
PSO675G5385 Papaver somniferum HOM05D001975 ORTHO05D002436 1.2e-07 59.3 54 51.9
Ah.01g019790 Amaranthus hybridus HOM05D001975 ORTHO05D002436 1.6e-07 58.9 56 53.6
DCAR_029005 Daucus carota HOM05D001975 ORTHO05D002436 2.1e-07 58.5 54 51.9
Gohir.D12G041800 Gossypium hirsutum HOM05D001975 ORTHO05D002436 2.1e-07 58.5 55 54.5
Gorai.008G043800 Gossypium raimondii HOM05D001975 ORTHO05D002436 2.1e-07 58.5 55 54.5
Gohir.A12G030600 Gossypium hirsutum HOM05D001975 ORTHO05D002436 2.7e-07 58.2 55 54.5
SGA_v2.0_scaffold58G20589 Striga asiatica HOM05D001975 ORTHO05D002436 2.7e-07 58.2 57 56.1
Sed0019117 Sechium edule HOM05D001975 ORTHO05D002436 3.5e-07 57.8 55 56.4
Solyc01g109170.3 Solanum lycopersicum HOM05D001975 ORTHO05D002436 3.5e-07 57.8 46 63.0
AUR62011391 Chenopodium quinoa HOM05D001975 ORTHO05D002436 4.6e-07 57.4 57 54.4
AUR62016670 Chenopodium quinoa HOM05D001975 ORTHO05D002436 4.6e-07 57.4 57 54.4
PSO541G2850 Papaver somniferum HOM05D001975 ORTHO05D002436 4.6e-07 57.4 54 51.9
Dinv42104 Davidia involucrata HOM05D001975 ORTHO05D002436 6.0e-07 57.0 55 52.7
Os03g0767800 Oryza sativa ssp. japonica HOM05D001975 ORTHO05D002436 6.0e-07 57.0 67 50.7
ATR0733G021 Amborella trichopoda HOM05D001975 ORTHO05D002436 7.8e-07 56.6 56 44.6
CARHR245280 Cardamine hirsuta HOM05D001975 ORTHO05D002436 7.8e-07 56.6 62 53.2
Cpa.g.sc62.89 Carica papaya HOM05D001975 ORTHO05D002436 7.8e-07 56.6 59 49.2
PSO675G9236 Papaver somniferum HOM05D001975 ORTHO05D002436 7.8e-07 56.6 54 51.9
Lsat_1_v5_gn_4_179261 Lactuca sativa HOM05D001975 ORTHO05D002436 1.3e-06 55.8 53 47.2
RcHm_v2.0_Chr6g0261111 Rosa chinensis HOM05D001975 ORTHO05D002436 1.3e-06 55.8 55 50.9
THA.LOC104804363 Tarenaya hassleriana HOM05D001975 ORTHO05D002436 1.3e-06 55.8 45 62.2
COL.COLO4_17785 Corchorus olitorius HOM05D001975 ORTHO05D002436 1.7e-06 55.5 51 54.9
HanXRQChr04g0101111 Helianthus annuus HOM05D001975 ORTHO05D002436 1.7e-06 55.5 56 50.0
Manes.17G097300 Manihot esculenta HOM05D001975 ORTHO05D002436 1.7e-06 55.5 55 50.9
Potri.004G149100 Populus trichocarpa HOM05D001975 ORTHO05D002436 1.7e-06 55.5 55 54.5
RcHm_v2.0_Chr6g0261051 Rosa chinensis HOM05D001975 ORTHO05D002436 1.7e-06 55.5 54 53.7
unitig_62.g23405 Utricularia gibba HOM05D001975 ORTHO05D002436 1.7e-06 55.5 56 48.2
Ah.01g006530 Amaranthus hybridus HOM05D001975 ORTHO05D002436 2.3e-06 55.1 57 49.1
MBI16_g29180_MAGBIO Magnolia biondii HOM05D001975 ORTHO05D002436 2.3e-06 55.1 61 55.7
MBI16_g36195_MAGBIO Magnolia biondii HOM05D001975 ORTHO05D002436 2.3e-06 55.1 61 55.7
Eucgr.G00492 Eucalyptus grandis HOM05D001975 ORTHO05D002436 3.0e-06 54.7 54 51.9
Eucgr.G01545 Eucalyptus grandis HOM05D001975 ORTHO05D002436 3.0e-06 54.7 54 51.9
PGR042G2478 Punica granatum HOM05D001975 ORTHO05D002436 3.0e-06 54.7 53 54.7
MSTRG.20118 Avicennia marina HOM05D001975 ORTHO05D002436 3.9e-06 54.3 56 51.8
Cc02_g18110 Coffea canephora HOM05D001975 ORTHO05D002436 3.9e-06 54.3 58 50.0
Duzib132G1142 Durio zibethinus HOM05D001975 ORTHO05D002436 3.9e-06 54.3 55 50.9
Eucgr.I01231 Eucalyptus grandis HOM05D001975 ORTHO05D002436 3.9e-06 54.3 54 50.0
FvH4_2g07440 Fragaria vesca HOM05D001975 ORTHO05D002436 3.9e-06 54.3 58 48.3
FAN24G2703 Fragaria x ananassa HOM05D001975 ORTHO05D002436 3.9e-06 54.3 58 48.3
PSO675G3002 Papaver somniferum HOM05D001975 ORTHO05D002436 3.9e-06 54.3 54 46.3
Sc08g0000250 Simmondsia chinensis HOM05D001975 ORTHO05D002436 3.9e-06 54.3 62 48.4
Aa31LG6G13760 Aethionema arabicum HOM05D001975 ORTHO05D002436 5.1e-06 53.9 57 50.9
arahy.Tifrunner.gnm1.ann1.5MZ6CB Arachis hypogaea HOM05D001975 ORTHO05D002436 5.1e-06 53.9 46 52.2
FAN15G0176 Fragaria x ananassa HOM05D001975 ORTHO05D002436 5.1e-06 53.9 54 50.0
FAN15G2958 Fragaria x ananassa HOM05D001975 ORTHO05D002436 5.1e-06 53.9 54 50.0
PSO541G2738 Papaver somniferum HOM05D001975 ORTHO05D002436 5.1e-06 53.9 54 46.3
FAN27G1091 Fragaria x ananassa HOM05D001975 ORTHO05D002436 6.6e-06 53.5 54 50.0
Prupe.8G109700 Prunus persica HOM05D001975 ORTHO05D002436 6.6e-06 53.5 55 49.1
EL10Ac6g14849 Beta vulgaris HOM05D001975 ORTHO05D002436 8.6e-06 53.1 63 49.2
CiPaw.05G059400 Carya illinoinensis HOM05D001975 ORTHO05D002436 8.6e-06 53.1 55 49.1
AUR62003230 Chenopodium quinoa HOM05D001975 ORTHO05D002436 8.6e-06 53.1 63 49.2
ClCG09G017740 Citrullus lanatus HOM05D001975 ORTHO05D002436 8.6e-06 53.1 55 52.7
MELO3C021940.2 Cucumis melo HOM05D001975 ORTHO05D002436 8.6e-06 53.1 55 52.7
CsaV3_2G014340 Cucumis sativus L. HOM05D001975 ORTHO05D002436 8.6e-06 53.1 55 52.7
MD10G1085600 Malus domestica HOM05D001975 ORTHO05D002436 8.6e-06 53.1 55 49.1


User provided reference genes

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