Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_22210_v3 Cicer arietinum L. HOM05D005053 ORTHO05D006206 4.7e-123 444.5 219 100.0
Medtr8g079240 Medicago truncatula HOM05D005053 ORTHO05D006206 3.2e-119 431.8 219 95.9
Glyma.17G180900 Glycine max HOM05D005053 ORTHO05D006206 1.2e-118 429.9 219 95.4
Phvul.003G248000 Phaseolus vulgaris HOM05D005053 ORTHO05D006206 1.0e-117 426.8 219 94.5
Lj4g0026236 Lotus japonicus HOM05D005053 ORTHO05D006206 6.6e-117 424.1 219 93.2
VMungo0251G0766 Vigna mungo HOM05D005053 ORTHO05D006206 1.1e-116 423.3 219 95.0
Lalb_Chr09g0333681 Lupinus albus HOM05D005053 ORTHO05D006206 1.2e-115 419.9 219 91.3
arahy.Tifrunner.gnm1.ann1.VE46QQ Arachis hypogaea HOM05D005053 ORTHO05D006206 2.8e-115 418.7 219 92.7
arahy.Tifrunner.gnm1.ann1.IMYE37 Arachis hypogaea HOM05D005053 ORTHO05D006206 1.8e-114 416.0 219 91.8
Ca_22228_v3 Cicer arietinum L. HOM05D005053 ORTHO05D006206 4.3e-108 394.8 193 100.0
PGR102G2816 Punica granatum HOM05D005053 ORTHO05D006206 1.6e-107 392.9 219 85.8
RcHm_v2.0_Chr2g0104011 Rosa chinensis HOM05D005053 ORTHO05D006206 1.8e-106 389.4 220 85.0
Aqoxy6G00906 Aquilegia oxysepala HOM05D005053 ORTHO05D006206 1.5e-105 386.3 220 85.0
MD02G1163200 Malus domestica HOM05D005053 ORTHO05D006206 4.4e-105 384.8 220 84.1
EL10Ac6g15144 Beta vulgaris HOM05D005053 ORTHO05D006206 1.3e-104 383.3 219 84.9
Atru.chr3.440 Acer truncatum HOM05D005053 ORTHO05D006206 2.2e-104 382.5 220 85.0
AUR62001971 Chenopodium quinoa HOM05D005053 ORTHO05D006206 8.3e-104 380.6 219 84.5
Cfa003962 Carpinus fangiana HOM05D005053 ORTHO05D006206 2.4e-103 379.0 221 83.7
Manes.13G129200 Manihot esculenta HOM05D005053 ORTHO05D006206 3.2e-103 378.6 220 84.5
CSS0024932 Camellia sinensis var. sinensis HOM05D005053 ORTHO05D006206 7.1e-103 377.5 220 83.6
COL.COLO4_11341 Corchorus olitorius HOM05D005053 ORTHO05D006206 7.1e-103 377.5 220 84.5
Thecc.01G049700 Theobroma cacao HOM05D005053 ORTHO05D006206 7.1e-103 377.5 221 84.6
FvH4_1g14960 Fragaria vesca HOM05D005053 ORTHO05D006206 1.6e-102 376.3 221 83.3
FAN23G1215 Fragaria x ananassa HOM05D005053 ORTHO05D006206 2.7e-102 375.6 221 82.8
Gorai.008G072800 Gossypium raimondii HOM05D005053 ORTHO05D006206 2.7e-102 375.6 220 83.2
GSVIVG01005060001 Vitis vinifera HOM05D005053 ORTHO05D006206 2.7e-102 375.6 220 83.6
FAN26G1713 Fragaria x ananassa HOM05D005053 ORTHO05D006206 3.5e-102 375.2 221 82.8
vmacro17912 Vaccinium macrocarpon HOM05D005053 ORTHO05D006206 6.0e-102 374.4 220 82.7
Cpa.g.sc6.408 Carica papaya HOM05D005053 ORTHO05D006206 7.8e-102 374.0 220 83.2
Cc07_g05640 Coffea canephora HOM05D005053 ORTHO05D006206 7.8e-102 374.0 220 83.6
Hund13583 Selenicereus undatus HOM05D005053 ORTHO05D006206 7.8e-102 374.0 219 81.3
MD15G1276200 Malus domestica HOM05D005053 ORTHO05D006206 1.0e-101 373.6 220 82.7
FAN19G0163 Fragaria x ananassa HOM05D005053 ORTHO05D006206 1.7e-101 372.9 221 82.4
Sc03g0001310 Simmondsia chinensis HOM05D005053 ORTHO05D006206 2.3e-101 372.5 219 81.3
Actinidia12070 Actinidia chinensis HOM05D005053 ORTHO05D006206 5.1e-101 371.3 220 84.1
ClCG01G016600 Citrullus lanatus HOM05D005053 ORTHO05D006206 5.1e-101 371.3 221 81.0
MELO3C007534.2 Cucumis melo HOM05D005053 ORTHO05D006206 8.6e-101 370.5 221 80.5
Eucgr.H01988 Eucalyptus grandis HOM05D005053 ORTHO05D006206 8.6e-101 370.5 219 81.7
Actinidia36514 Actinidia chinensis HOM05D005053 ORTHO05D006206 1.1e-100 370.2 220 84.5
CsaV3_6G042980 Cucumis sativus L. HOM05D005053 ORTHO05D006206 1.9e-100 369.4 221 80.1
FAN28G1734 Fragaria x ananassa HOM05D005053 ORTHO05D006206 1.9e-100 369.4 222 82.0
Hma1.2p1_0687F.1_g203520 Hydrangea macrophylla HOM05D005053 ORTHO05D006206 4.3e-100 368.2 220 81.8
HanXRQChr14g0448331 Helianthus annuus HOM05D005053 ORTHO05D006206 9.5e-100 367.1 220 80.9
TAR376G0500 Trochodendron aralioides HOM05D005053 ORTHO05D006206 2.1e-99 365.9 220 81.8
Ciclev10026393m.g Citrus clementina HOM05D005053 ORTHO05D006206 8.1e-99 364.0 238 78.2
Sed0021889 Sechium edule HOM05D005053 ORTHO05D006206 8.1e-99 364.0 220 79.5
Migut.H00475 Erythranthe guttata HOM05D005053 ORTHO05D006206 1.8e-98 362.8 220 80.9
Lsat_1_v5_gn_2_86920 Lactuca sativa HOM05D005053 ORTHO05D006206 2.3e-98 362.5 220 79.5
HanXRQChr07g0199901 Helianthus annuus HOM05D005053 ORTHO05D006206 5.2e-98 361.3 220 79.5
THA.LOC104819229 Tarenaya hassleriana HOM05D005053 ORTHO05D006206 6.8e-98 360.9 220 80.5
PSO675G4006 Papaver somniferum HOM05D005053 ORTHO05D006206 1.2e-97 360.1 220 80.0
PSO541G4895 Papaver somniferum HOM05D005053 ORTHO05D006206 2.0e-97 359.4 220 80.0
ECA238G1636 Erigeron canadensis HOM05D005053 ORTHO05D006206 2.6e-97 359.0 220 79.1
Nitab4.5_0000806g0140 Nicotiana tabacum HOM05D005053 ORTHO05D006206 1.3e-96 356.7 219 79.0
Potri.007G037800 Populus trichocarpa HOM05D005053 ORTHO05D006206 1.7e-96 356.3 220 80.9
CAN.G470.7 Capsicum annuum HOM05D005053 ORTHO05D006206 3.7e-96 355.1 219 78.1
Solyc02g065180.3 Solanum lycopersicum HOM05D005053 ORTHO05D006206 1.1e-95 353.6 219 79.0
Sopen02g015310 Solanum pennellii HOM05D005053 ORTHO05D006206 1.1e-95 353.6 219 79.0
THA.LOC104821262 Tarenaya hassleriana HOM05D005053 ORTHO05D006206 4.1e-95 351.7 220 78.2
Nn6g32115 Nelumbo nucifera HOM05D005053 ORTHO05D006206 1.6e-94 349.7 221 76.0
CARHR280750 Cardamine hirsuta HOM05D005053 ORTHO05D006206 2.1e-94 349.4 220 79.1
Oeu004887.1 Olea europaea HOM05D005053 ORTHO05D006206 4.6e-94 348.2 220 80.0
CiPaw.01G025900 Carya illinoinensis HOM05D005053 ORTHO05D006206 7.8e-94 347.4 196 85.7
Nn5g29376 Nelumbo nucifera HOM05D005053 ORTHO05D006206 1.0e-93 347.1 220 78.2
Carub.0008s2757 Capsella rubella HOM05D005053 ORTHO05D006206 1.3e-93 346.7 220 77.7
AL8G44450 Arabidopsis lyrata HOM05D005053 ORTHO05D006206 1.7e-93 346.3 220 78.2
unitig_736.g22369 Utricularia gibba HOM05D005053 ORTHO05D006206 3.0e-93 345.5 222 77.5
Aa31LG1G15480 Aethionema arabicum HOM05D005053 ORTHO05D006206 6.6e-93 344.4 220 77.7
MSTRG.15402 Avicennia marina HOM05D005053 ORTHO05D006206 4.3e-92 341.7 229 75.1
AT5G66930 Arabidopsis thaliana HOM05D005053 ORTHO05D006206 5.6e-92 341.3 220 77.7
QL06p043337 Quercus lobata HOM05D005053 ORTHO05D006206 5.6e-92 341.3 319 59.2
Peaxi162Scf00049g01010 Petunia axillaris HOM05D005053 ORTHO05D006206 9.6e-92 340.5 232 73.3
Haze_15460 Corylus avellana HOM05D005053 ORTHO05D006206 2.8e-91 339.0 199 81.4
Sp2g29730 Schrenkiella parvula HOM05D005053 ORTHO05D006206 2.8e-91 339.0 220 76.8
BcaB04g20086 Brassica carinata HOM05D005053 ORTHO05D006206 1.4e-90 336.7 221 76.0
SGA_v2.0_scaffold204G41608 Striga asiatica HOM05D005053 ORTHO05D006206 1.4e-90 336.7 221 76.0
SGA_v2.0_scaffold27G11440 Striga asiatica HOM05D005053 ORTHO05D006206 5.2e-90 334.7 221 75.6
AUR62003832 Chenopodium quinoa HOM05D005053 ORTHO05D006206 6.8e-90 334.3 193 83.9
Gohir.A12G069100 Gossypium hirsutum HOM05D005053 ORTHO05D006206 1.7e-88 329.7 194 82.5
TAR628G0491 Trochodendron aralioides HOM05D005053 ORTHO05D006206 2.9e-88 328.9 194 82.0
Gohir.D12G090200 Gossypium hirsutum HOM05D005053 ORTHO05D006206 3.8e-88 328.6 194 81.4
Thhalv10005270m.g Eutrema salsugineum HOM05D005053 ORTHO05D006206 4.9e-88 328.2 212 76.9
Rhsim08G0104900 Rhododendron simsii HOM05D005053 ORTHO05D006206 6.4e-88 327.8 300 60.7
Dinv29944 Davidia involucrata HOM05D005053 ORTHO05D006206 2.4e-87 325.9 198 80.8
ATR0225G009 Amborella trichopoda HOM05D005053 ORTHO05D006206 3.2e-87 325.5 221 72.4
Ah.02g124120 Amaranthus hybridus HOM05D005053 ORTHO05D006206 5.4e-87 324.7 210 77.1
Duzib264G0045 Durio zibethinus HOM05D005053 ORTHO05D006206 1.2e-86 323.6 194 80.9
BcaC04g23174 Brassica carinata HOM05D005053 ORTHO05D006206 1.6e-86 323.2 222 74.8
C09p11390 Brassica napus HOM05D005053 ORTHO05D006206 1.6e-86 323.2 222 74.8
SEGI_13826 Sequoiadendron giganteum HOM05D005053 ORTHO05D006206 1.6e-86 323.2 220 71.8
TWI53G1273 Tripterygium wilfordii HOM05D005053 ORTHO05D006206 1.6e-86 323.2 195 79.5
TWI09G0689 Tripterygium wilfordii HOM05D005053 ORTHO05D006206 2.1e-86 322.8 198 78.8
BraA09t36613Z Brassica rapa HOM05D005053 ORTHO05D006206 6.0e-86 321.2 221 72.9
A09p09640 Brassica napus HOM05D005053 ORTHO05D006206 7.8e-86 320.9 221 73.3
BolC9t54027H Brassica oleracea HOM05D005053 ORTHO05D006206 2.3e-85 319.3 223 73.1
Duzib264G0685 Durio zibethinus HOM05D005053 ORTHO05D006206 5.1e-85 318.2 194 79.9
BcaC06g34767 Brassica carinata HOM05D005053 ORTHO05D006206 1.1e-84 317.0 221 72.9
C07p24820 Brassica napus HOM05D005053 ORTHO05D006206 1.1e-84 317.0 221 72.9
BraA07t29424Z Brassica rapa HOM05D005053 ORTHO05D006206 7.3e-84 314.3 221 72.4
BcaB02g09970 Brassica carinata HOM05D005053 ORTHO05D006206 1.3e-83 313.5 221 73.8
A07p16970 Brassica napus HOM05D005053 ORTHO05D006206 2.1e-83 312.8 221 71.9
CiPaw.02G011700 Carya illinoinensis HOM05D005053 ORTHO05D006206 1.8e-82 309.7 221 71.9
Duzib147G0596 Durio zibethinus HOM05D005053 ORTHO05D006206 4.0e-82 308.5 194 78.9
Psat4g088960 Pisum sativum HOM05D005053 ORTHO05D006206 9.0e-82 307.4 157 94.9
RhsimUnG0070600 Rhododendron simsii HOM05D005053 ORTHO05D006206 1.2e-81 307.0 289 59.5
HPP92_024294 Vanilla planifolia HOM05D005053 ORTHO05D006206 1.2e-81 307.0 222 70.3
HPP92_024303 Vanilla planifolia HOM05D005053 ORTHO05D006206 1.2e-81 307.0 222 70.3
Nitab4.5_0009901g0010 Nicotiana tabacum HOM05D005053 ORTHO05D006206 4.5e-81 305.1 204 73.5
Sabra07G0034100 Salix brachista HOM05D005053 ORTHO05D006206 3.8e-80 302.0 197 77.2
Mapoly0011s0084 Marchantia polymorpha HOM05D005053 ORTHO05D006206 1.2e-78 297.0 219 65.8
Peaxi162Scf00993g00120 Petunia axillaris HOM05D005053 ORTHO05D006206 1.6e-78 296.6 192 72.9
MBI16_g19902_MAGBIO Magnolia biondii HOM05D005053 ORTHO05D006206 2.1e-78 296.2 183 78.7
BolC7t43007H Brassica oleracea HOM05D005053 ORTHO05D006206 1.0e-77 293.9 210 71.4
SMO271G0126 Selaginella moellendorffii HOM05D005053 ORTHO05D006206 1.3e-75 287.0 219 62.1
PGSC0003DMG400010070 Solanum tuberosum HOM05D005053 ORTHO05D006206 3.6e-75 285.4 213 65.3
Solyc02g090330.3 Solanum lycopersicum HOM05D005053 ORTHO05D006206 3.1e-74 282.3 213 63.8
Prupe.7G140800 Prunus persica HOM05D005053 ORTHO05D006206 1.4e-71 273.5 163 82.8
BcaC03g18393 Brassica carinata HOM05D005053 ORTHO05D006206 4.2e-71 271.9 223 63.7
C02p64670 Brassica napus HOM05D005053 ORTHO05D006206 4.2e-71 271.9 223 63.7
Os12g0428200 Oryza sativa ssp. japonica HOM05D005053 ORTHO05D006206 5.5e-71 271.6 222 61.7
DCAR_025697 Daucus carota HOM05D005053 ORTHO05D006206 1.6e-70 270.0 169 78.7
Dinv39902 Davidia involucrata HOM05D005053 ORTHO05D006206 1.6e-70 270.0 172 74.4
Lj7A44T18 Lonicera japonica HOM05D005053 ORTHO05D006206 1.6e-70 270.0 178 74.7
BolC2t12528H Brassica oleracea HOM05D005053 ORTHO05D006206 1.3e-69 266.9 218 63.8
Pp3c11_5110 Physcomitrium patens HOM05D005053 ORTHO05D006206 2.5e-68 262.7 221 58.4
Zm00001eb184240 Zea mays HOM05D005053 ORTHO05D006206 9.0e-66 254.2 222 59.5
Ah.03g144090 Amaranthus hybridus HOM05D005053 ORTHO05D006206 2.0e-65 253.1 195 69.7
Nitab4.5_0002157g0070 Nicotiana tabacum HOM05D005053 ORTHO05D006206 1.7e-64 250.0 168 72.0
AagrBONN_evm.TU.Sc2ySwM_344.1821 Anthoceros agrestis HOM05D005053 ORTHO05D006206 6.5e-64 248.1 195 63.1
CBR_g23008 Chara braunii HOM05D005053 ORTHO05D006206 9.3e-63 244.2 219 53.9
AagrBONN_evm.TU.Sc2ySwM_344.1822 Anthoceros agrestis HOM05D005053 ORTHO05D006206 2.3e-61 239.6 222 54.5
Os12g0446700 Oryza sativa ssp. japonica HOM05D005053 ORTHO05D006206 2.8e-59 232.6 196 59.7
Psat4g089040 Pisum sativum HOM05D005053 ORTHO05D006206 3.4e-57 225.7 182 65.9
Sopen02g035010 Solanum pennellii HOM05D005053 ORTHO05D006206 3.7e-51 205.7 161 62.7
TPR.G672 Trifolium pratense HOM05D005053 ORTHO05D006206 5.0e-48 195.3 99 96.0
AagrBONN_evm.TU.Sc2ySwM_369.468 Anthoceros agrestis HOM05D000050 ORTHO05D000771 2.5e-47 193.0 219 47.0
TPR.G40637 Trifolium pratense HOM05D005053 ORTHO05D006206 4.2e-47 192.2 93 98.9
CDE02G0556 Ceratophyllum demersum HOM05D005053 ORTHO05D006206 1.4e-45 187.2 175 54.3
MCO07G250 Micromonas commoda HOM05D005053 ORTHO05D006206 6.1e-38 161.8 224 39.7
SGA_v2.0_scaffold15G07238 Striga asiatica HOM05D005053 ORTHO05D006206 6.7e-37 158.3 248 41.5
Cre07.g334700 Chlamydomonas reinhardtii HOM05D005053 ORTHO05D006206 3.7e-35 152.5 243 37.4
PRCOL_00006110 Prasinoderma coloniale HOM05D005053 ORTHO05D006206 3.2e-31 139.4 222 38.3
FAN19G1388 Fragaria x ananassa HOM05D005053 ORTHO05D006206 1.2e-30 137.5 84 77.4
Zm00001eb184160 Zea mays HOM05D005053 ORTHO05D006206 4.0e-29 132.5 84 72.6
Nitab4.5_0003750g0060 Nicotiana tabacum HOM05D005053 ORTHO05D006206 1.3e-27 127.5 140 49.3
AUR62028910 Chenopodium quinoa HOM05D005053 ORTHO05D006206 1.6e-25 120.6 92 64.1
Ciclev10027037m.g Citrus clementina HOM05D005053 ORTHO05D006206 8.8e-21 104.8 82 69.5
CAN.G836.41 Capsicum annuum HOM05D005053 ORTHO05D024763 3.4e-12 76.3 142 38.7
Cfa024505 Carpinus fangiana HOM05D005053 ORTHO05D124968 1.0e-08 64.7 204 25.0


User provided reference genes

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