Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_22095_v3 Cicer arietinum L. HOM05D004917 ORTHO05D005954 9.5e-144 513.5 252 100.0
Medtr4g097500 Medicago truncatula HOM05D004917 ORTHO05D005954 7.1e-123 444.1 252 84.1
Psat4g080360 Pisum sativum HOM05D004917 ORTHO05D005954 7.3e-120 434.1 253 84.6
Lj4g0024725 Lotus japonicus HOM05D004917 ORTHO05D005954 3.9e-113 411.8 256 79.7
Glyma.17G158500 Glycine max HOM05D004917 ORTHO05D005954 6.9e-110 401.0 250 79.2
VMungo0251G1412 Vigna mungo HOM05D004917 ORTHO05D005954 1.4e-107 393.3 250 78.0
Phvul.003G232900 Phaseolus vulgaris HOM05D004917 ORTHO05D005954 9.3e-107 390.6 251 78.1
Glyma.17G158400 Glycine max HOM05D004917 ORTHO05D005954 1.2e-106 390.2 250 77.2
arahy.Tifrunner.gnm1.ann1.1K25L2 Arachis hypogaea HOM05D004917 ORTHO05D005954 2.6e-101 372.5 253 75.9
Phvul.003G232800 Phaseolus vulgaris HOM05D004917 ORTHO05D005954 1.9e-99 366.3 249 73.1
Atru.chr3.1060 Acer truncatum HOM05D004917 ORTHO05D005954 2.4e-99 365.9 237 73.4
VMungo0251G2665 Vigna mungo HOM05D004917 ORTHO05D005954 4.2e-99 365.2 250 73.6
QL06p038930 Quercus lobata HOM05D004917 ORTHO05D005954 5.4e-99 364.8 247 72.1
arahy.Tifrunner.gnm1.ann1.UB5R5Q Arachis hypogaea HOM05D004917 ORTHO05D005954 1.6e-98 363.2 253 74.3
Cfa004388 Carpinus fangiana HOM05D004917 ORTHO05D005954 1.8e-97 359.8 228 76.8
Sabra14G0006700 Salix brachista HOM05D004917 ORTHO05D005954 3.0e-97 359.0 220 77.3
Prupe.6G216800 Prunus persica HOM05D004917 ORTHO05D005954 8.7e-97 357.5 261 71.6
Potri.014G012100 Populus trichocarpa HOM05D004917 ORTHO05D005954 4.3e-96 355.1 225 76.4
Ciclev10026314m.g Citrus clementina HOM05D004917 ORTHO05D005954 9.6e-96 354.0 253 70.4
Eucgr.H02332 Eucalyptus grandis HOM05D004917 ORTHO05D005954 9.6e-96 354.0 199 82.4
Hma1.2p1_0424F.1_g150480 Hydrangea macrophylla HOM05D004917 ORTHO05D005954 9.6e-96 354.0 259 70.3
FvH4_1g18250 Fragaria vesca HOM05D004917 ORTHO05D005954 4.8e-95 351.7 245 72.7
GSVIVG01007444001 Vitis vinifera HOM05D004917 ORTHO05D005954 8.1e-95 350.9 206 80.1
GSVIVG01004399001 Vitis vinifera HOM05D004917 ORTHO05D005954 1.1e-94 350.5 204 81.9
TAR628G1580 Trochodendron aralioides HOM05D004917 ORTHO05D005954 1.4e-94 350.1 248 69.8
COL.COLO4_11615 Corchorus olitorius HOM05D004917 ORTHO05D005954 3.1e-94 349.0 262 69.1
Thecc.01G076300 Theobroma cacao HOM05D004917 ORTHO05D005954 3.1e-94 349.0 248 69.8
Lalb_Chr11g0075991 Lupinus albus HOM05D004917 ORTHO05D005954 5.3e-94 348.2 255 71.0
RcHm_v2.0_Chr2g0108761 Rosa chinensis HOM05D004917 ORTHO05D005954 5.3e-94 348.2 245 71.4
TWI74G1062 Tripterygium wilfordii HOM05D004917 ORTHO05D005954 5.3e-94 348.2 240 67.9
Cc07_g07360 Coffea canephora HOM05D004917 ORTHO05D005954 6.9e-94 347.8 198 82.3
Manes.13G109000 Manihot esculenta HOM05D004917 ORTHO05D005954 1.2e-93 347.1 221 77.8
Cpa.g.sc673.2 Carica papaya HOM05D004917 ORTHO05D005954 3.4e-93 345.5 221 75.1
PGSC0003DMG400003322 Solanum tuberosum HOM05D004917 ORTHO05D005954 4.5e-93 345.1 198 78.8
CiPaw.01G001900 Carya illinoinensis HOM05D004917 ORTHO05D005954 1.7e-92 343.2 237 71.3
PSO017G2968 Papaver somniferum HOM05D004917 ORTHO05D005954 1.7e-92 343.2 240 72.5
Sopen02g014680 Solanum pennellii HOM05D004917 ORTHO05D005954 1.7e-92 343.2 198 78.8
Actinidia16409 Actinidia chinensis HOM05D004917 ORTHO05D005954 3.8e-92 342.0 203 79.3
FAN23G1748 Fragaria x ananassa HOM05D004917 ORTHO05D005954 3.8e-92 342.0 248 70.6
CANSAT01G2436 Cannabis sativa HOM05D004917 ORTHO05D005954 6.4e-92 341.3 248 69.4
Sc07g0000430 Simmondsia chinensis HOM05D004917 ORTHO05D005954 6.4e-92 341.3 221 73.8
CAN.G775.1 Capsicum annuum HOM05D004917 ORTHO05D005954 8.4e-92 340.9 232 71.1
Lsat_1_v5_gn_4_160020 Lactuca sativa HOM05D004917 ORTHO05D005954 4.2e-91 338.6 245 71.0
Gorai.008G085700 Gossypium raimondii HOM05D004917 ORTHO05D005954 5.5e-91 338.2 216 73.1
MD02G1189600 Malus domestica HOM05D004917 ORTHO05D005954 5.5e-91 338.2 257 66.5
FvH4_1g18230 Fragaria vesca HOM05D004917 ORTHO05D005954 7.1e-91 337.8 248 69.4
FAN19G0182 Fragaria x ananassa HOM05D004917 ORTHO05D005954 7.1e-91 337.8 248 69.4
FAN26G0787 Fragaria x ananassa HOM05D004917 ORTHO05D005954 7.1e-91 337.8 238 71.4
Nn5g30667 Nelumbo nucifera HOM05D004917 ORTHO05D005954 7.1e-91 337.8 262 67.9
Rhsim08G0090300 Rhododendron simsii HOM05D004917 ORTHO05D005954 7.1e-91 337.8 251 68.1
Sed0017274 Sechium edule HOM05D004917 ORTHO05D005954 1.6e-90 336.7 220 74.5
FAN19G2004 Fragaria x ananassa HOM05D004917 ORTHO05D005954 3.5e-90 335.5 236 72.5
Duzib147G0189 Durio zibethinus HOM05D004917 ORTHO05D005954 4.6e-90 335.1 236 69.9
Gohir.D12G076900 Gossypium hirsutum HOM05D004917 ORTHO05D005954 6.0e-90 334.7 216 72.2
Thecc.01G076400 Theobroma cacao HOM05D004917 ORTHO05D005954 6.0e-90 334.7 234 70.5
ECA232G4556 Erigeron canadensis HOM05D004917 ORTHO05D005954 7.9e-90 334.3 241 68.5
RcHm_v2.0_Chr2g0108751 Rosa chinensis HOM05D004917 ORTHO05D005954 7.9e-90 334.3 248 69.8
Gorai.011G108500 Gossypium raimondii HOM05D004917 ORTHO05D005954 1.3e-89 333.6 235 68.5
vmacro18012 Vaccinium macrocarpon HOM05D004917 ORTHO05D005954 1.3e-89 333.6 245 67.3
Aqoxy1G00260 Aquilegia oxysepala HOM05D004917 ORTHO05D005954 3.9e-89 332.0 258 66.7
Eucgr.H02333 Eucalyptus grandis HOM05D004917 ORTHO05D005954 3.9e-89 332.0 263 66.2
PSO170G3850 Papaver somniferum HOM05D004917 ORTHO05D005954 3.9e-89 332.0 229 73.4
COL.COLO4_11616 Corchorus olitorius HOM05D004917 ORTHO05D005954 6.7e-89 331.3 236 69.5
Gohir.D10G098900 Gossypium hirsutum HOM05D004917 ORTHO05D005954 6.7e-89 331.3 235 68.1
Gohir.A10G089200 Gossypium hirsutum HOM05D004917 ORTHO05D005954 1.1e-88 330.5 235 68.1
CsaV3_2G016370 Cucumis sativus L. HOM05D004917 ORTHO05D005954 5.6e-88 328.2 242 68.6
DCAR_014953 Daucus carota HOM05D004917 ORTHO05D005954 7.4e-88 327.8 220 70.0
HanXRQChr09g0262071 Helianthus annuus HOM05D004917 ORTHO05D005954 8.2e-87 324.3 234 67.1
Os03g0729200 Oryza sativa ssp. japonica HOM05D004917 ORTHO05D005954 1.4e-86 323.6 202 74.8
Zm00001eb215580 Zea mays HOM05D004917 ORTHO05D005954 3.1e-86 322.4 202 74.8
EL10Ac6g15593 Beta vulgaris HOM05D004917 ORTHO05D005954 4.0e-86 322.0 240 65.8
FvH4_1g18251 Fragaria vesca HOM05D004917 ORTHO05D005954 2.6e-85 319.3 198 76.3
PGR102G2131 Punica granatum HOM05D004917 ORTHO05D005954 2.6e-85 319.3 239 64.9
Sp2g28930 Schrenkiella parvula HOM05D004917 ORTHO05D005954 1.0e-84 317.4 253 62.8
PSO170G3322 Papaver somniferum HOM05D004917 ORTHO05D005954 2.2e-84 316.2 196 75.0
AL8G43550 Arabidopsis lyrata HOM05D004917 ORTHO05D005954 8.4e-84 314.3 242 65.7
SalBow5G1886 Salvia bowleyana HOM05D004917 ORTHO05D005954 8.4e-84 314.3 244 66.0
Thhalv10004770m.g Eutrema salsugineum HOM05D004917 ORTHO05D005954 1.4e-83 313.5 197 74.1
PSO017G2694 Papaver somniferum HOM05D004917 ORTHO05D005954 2.5e-83 312.8 195 74.9
Migut.L00432 Erythranthe guttata HOM05D004917 ORTHO05D005954 4.2e-83 312.0 252 63.1
AT5G65840 Arabidopsis thaliana HOM05D004917 ORTHO05D005954 1.6e-82 310.1 207 72.0
Carub.0008s2673 Capsella rubella HOM05D004917 ORTHO05D005954 1.6e-82 310.1 224 67.4
Aa31LG1G16240 Aethionema arabicum HOM05D006600 ORTHO05D008446 3.5e-82 308.9 256 64.1
THA.LOC104827747 Tarenaya hassleriana HOM05D004917 ORTHO05D005954 4.6e-82 308.5 193 73.1
Haze_15025 Corylus avellana HOM05D004917 ORTHO05D005954 2.3e-81 306.2 253 62.5
Ah.03g140710 Amaranthus hybridus HOM05D004917 ORTHO05D005954 3.0e-81 305.8 251 62.2
AUR62007540 Chenopodium quinoa HOM05D004917 ORTHO05D005954 3.0e-81 305.8 192 74.5
BraA09t36573Z Brassica rapa HOM05D004917 ORTHO05D005954 6.7e-81 304.7 238 62.6
PSO017G4293 Papaver somniferum HOM05D004917 ORTHO05D005954 8.7e-81 304.3 203 72.9
Lj4A165T49 Lonicera japonica HOM05D004917 ORTHO05D005954 2.5e-80 302.8 253 63.6
AUR62004032 Chenopodium quinoa HOM05D004917 ORTHO05D005954 3.3e-80 302.4 192 74.0
SEGI_14750 Sequoiadendron giganteum HOM05D004917 ORTHO05D005954 5.7e-80 301.6 188 73.4
CARHR279840 Cardamine hirsuta HOM05D004917 ORTHO05D005954 7.4e-80 301.2 264 61.0
FAN28G2407 Fragaria x ananassa HOM05D004917 ORTHO05D005954 7.4e-80 301.2 219 68.9
GSVIVG01007168001 Vitis vinifera HOM05D004917 ORTHO05D005954 9.7e-80 300.8 160 86.9
A09p09210 Brassica napus HOM05D004917 ORTHO05D005954 1.3e-79 300.4 238 61.3
PSO170G4503 Papaver somniferum HOM05D004917 ORTHO05D005954 1.3e-79 300.4 198 74.2
BcaB04g20033 Brassica carinata HOM05D004917 ORTHO05D005954 2.8e-79 299.3 246 60.2
BcaB04g20036 Brassica carinata HOM05D004917 ORTHO05D005954 2.8e-79 299.3 246 60.2
Nitab4.5_0000036g0150 Nicotiana tabacum HOM05D004917 ORTHO05D005954 3.7e-79 298.9 161 83.9
BcaC04g23243 Brassica carinata HOM05D004917 ORTHO05D005954 1.1e-78 297.4 238 60.9
RcHm_v2.0_Chr2g0108771 Rosa chinensis HOM05D004917 ORTHO05D005954 1.1e-78 297.4 202 72.3
SGA_v2.0_scaffold79G25603 Striga asiatica HOM05D004917 ORTHO05D005954 1.1e-78 297.4 233 65.2
C09p10750 Brassica napus HOM05D004917 ORTHO05D005954 1.8e-78 296.6 238 60.5
MELO3C020846.2 Cucumis melo HOM05D004917 ORTHO05D005954 1.8e-78 296.6 254 60.2
ClCG02G012210 Citrullus lanatus HOM05D004917 ORTHO05D005954 2.4e-78 296.2 202 70.8
DCAR_000455 Daucus carota HOM05D004917 ORTHO05D005954 2.4e-78 296.2 167 80.2
ATR0739G130 Amborella trichopoda HOM05D004917 ORTHO05D005954 5.3e-78 295.0 188 72.9
BolC9t53970H Brassica oleracea HOM05D004917 ORTHO05D005954 9.0e-78 294.3 238 60.1
Oeu013341.1 Olea europaea HOM05D004917 ORTHO05D005954 3.4e-77 292.4 157 85.4
FAN26G1896 Fragaria x ananassa HOM05D004917 ORTHO05D005954 4.5e-77 292.0 247 62.8
CSS0005558 Camellia sinensis var. sinensis HOM05D004917 ORTHO05D005954 3.2e-75 285.8 208 67.8
Migut.L00430 Erythranthe guttata HOM05D004917 ORTHO05D005954 8.8e-73 277.7 200 67.5
Dinv26959 Davidia involucrata HOM05D004917 ORTHO05D005954 2.5e-72 276.2 158 82.9
Peaxi162Scf00449g00417 Petunia axillaris HOM05D004917 ORTHO05D005954 5.7e-72 275.0 246 60.2
CDE02G4371 Ceratophyllum demersum HOM05D004917 ORTHO05D005954 5.3e-70 268.5 232 57.3
Os03g0729300 Oryza sativa ssp. japonica HOM05D004917 ORTHO05D005954 5.9e-69 265.0 187 64.2
Nitab4.5_0007379g0030 Nicotiana tabacum HOM05D004917 ORTHO05D005954 2.3e-65 253.1 231 57.1
Pp3c27_7100 Physcomitrium patens HOM05D004917 ORTHO05D005954 1.1e-59 234.2 206 51.9
MBI16_g06077_MAGBIO Magnolia biondii HOM05D004917 ORTHO05D005954 7.2e-59 231.5 229 56.3
Hund16417 Selenicereus undatus HOM05D004917 ORTHO05D005954 6.7e-57 224.9 145 73.8
Zm00001eb056030 Zea mays HOM05D004917 ORTHO05D005954 6.5e-52 208.4 131 70.2
AagrBONN_evm.TU.Sc2ySwM_368.1530 Anthoceros agrestis HOM05D004917 ORTHO05D005954 8.5e-52 208.0 201 48.8
unitig_37.g11996 Utricularia gibba HOM05D004917 ORTHO05D005954 1.1e-51 207.6 188 58.0
GSVIVG01004400001 Vitis vinifera HOM05D004917 ORTHO05D005954 5.7e-48 195.3 103 83.5
FAN23G2689 Fragaria x ananassa HOM05D004917 ORTHO05D005954 1.1e-46 191.0 152 65.8
QL06p038908 Quercus lobata HOM05D004917 ORTHO05D005954 3.1e-46 189.5 102 85.3
ATR0739G160 Amborella trichopoda HOM05D004917 ORTHO05D005954 1.1e-38 164.5 108 66.7
QL02p069743 Quercus lobata HOM05D004917 ORTHO05D005954 3.8e-36 156.0 98 73.5
GSVIVG01007167001 Vitis vinifera HOM05D004917 ORTHO05D005954 6.6e-36 155.2 106 73.6
QL06p038910 Quercus lobata HOM05D004917 ORTHO05D005954 1.5e-35 154.1 95 74.7
FAN28G0406 Fragaria x ananassa HOM05D004917 ORTHO05D005954 6.3e-31 138.7 101 67.3
FAN26G2723 Fragaria x ananassa HOM05D004917 ORTHO05D005954 4.5e-29 132.5 197 40.6
Potri.007G007201 Populus trichocarpa HOM05D004917 ORTHO05D005954 3.2e-22 109.8 69 79.7
Sabra07G0005500 Salix brachista HOM05D004917 ORTHO05D005954 3.2e-22 109.8 151 47.0
MCO14G127 Micromonas commoda HOM05D004917 ORTHO05D005954 1.2e-21 107.8 159 37.7
Carub.0004s1915 Capsella rubella HOM05D007024 ORTHO05D008865 6.2e-18 95.5 248 29.4
arahy.Tifrunner.gnm1.ann1.F27BB1 Arachis hypogaea HOM05D004917 ORTHO05D005954 1.4e-17 94.4 68 69.1
SMO353G0397 Selaginella moellendorffii HOM05D007024 ORTHO05D008865 5.2e-17 92.4 176 33.0
Zm00001eb030360 Zea mays HOM05D004917 ORTHO05D005954 1.7e-15 87.4 54 79.6
PRCOL_00004664 Prasinoderma coloniale HOM05D004917 ORTHO05D005954 4.1e-14 82.8 133 37.6
AagrBONN_evm.TU.Sc2ySwM_344.3825 Anthoceros agrestis HOM05D007024 ORTHO05D008865 2.1e-13 80.5 149 32.9
CDE04G0730 Ceratophyllum demersum HOM05D007024 ORTHO05D008865 4.6e-13 79.3 208 31.7
MCO06G061 Micromonas commoda HOM05D004917 ORTHO05D005954 1.0e-12 78.2 131 37.4
Gohir.A12G080465 Gossypium hirsutum HOM05D004917 ORTHO05D005954 4.3e-11 72.8 59 61.0
ATR0739G073 Amborella trichopoda HOM05D004917 ORTHO05D005954 8.1e-10 68.6 102 42.2
Haze_02356 Corylus avellana HOM05D004917 ORTHO05D005954 6.8e-09 65.5 37 81.1
Cre17.g697050 Chlamydomonas reinhardtii HOM05D004917 ORTHO05D005954 1.5e-08 64.3 138 34.1
MCO07G374 Micromonas commoda HOM05D004917 ORTHO05D005954 2.6e-08 63.5 82 42.7
GSVIVG01007445001 Vitis vinifera HOM05D004917 ORTHO05D005954 4.1e-06 56.2 54 55.6


User provided reference genes

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