Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_22084_v3 Cicer arietinum L. HOM05D004858 ORTHO05D005600 3.3e-58 228.0 105 100.0
Medtr4g097800 Medicago truncatula HOM05D004858 ORTHO05D005600 7.2e-45 183.7 106 84.0
TPR.G22417 Trifolium pratense HOM05D004858 ORTHO05D005600 2.3e-43 178.7 106 81.1
VMungo0251G0206 Vigna mungo HOM05D004858 ORTHO05D005600 3.9e-43 177.9 103 81.6
Glyma.05G110100 Glycine max HOM05D004858 ORTHO05D005600 8.8e-43 176.8 104 81.7
Glyma.17G157000 Glycine max HOM05D004858 ORTHO05D005600 1.1e-42 176.4 104 81.7
Lj4g0010254 Lotus japonicus HOM05D004858 ORTHO05D005600 7.4e-42 173.7 105 81.0
QL06p038187 Quercus lobata HOM05D004858 ORTHO05D005600 6.3e-41 170.6 104 74.0
arahy.Tifrunner.gnm1.ann1.YV33P0 Arachis hypogaea HOM05D004858 ORTHO05D005600 1.8e-40 169.1 105 77.1
CANSAT01G1371 Cannabis sativa HOM05D004858 ORTHO05D005600 1.8e-40 169.1 103 76.7
Phvul.003G231600 Phaseolus vulgaris HOM05D004858 ORTHO05D005600 4.1e-40 167.9 103 77.7
Lalb_Chr09g0329381 Lupinus albus HOM05D004858 ORTHO05D005600 6.9e-40 167.2 107 77.6
Lalb_Chr16g0385901 Lupinus albus HOM05D004858 ORTHO05D005600 9.1e-40 166.8 107 77.6
Cfa006798 Carpinus fangiana HOM05D004858 ORTHO05D005600 1.2e-39 166.4 105 72.4
Gorai.003G034000 Gossypium raimondii HOM05D004858 ORTHO05D005600 2.0e-39 165.6 105 75.2
Gohir.D03G032400 Gossypium hirsutum HOM05D004858 ORTHO05D005600 5.9e-39 164.1 105 75.2
TWI74G1540 Tripterygium wilfordii HOM05D004858 ORTHO05D005600 1.7e-38 162.5 105 72.4
Ciclev10026828m.g Citrus clementina HOM05D004858 ORTHO05D005600 2.2e-38 162.2 101 74.3
Gohir.A02G148000 Gossypium hirsutum HOM05D004858 ORTHO05D005600 5.0e-38 161.0 105 73.3
Lalb_Chr05g0220461 Lupinus albus HOM05D004858 ORTHO05D005600 6.5e-38 160.6 105 74.3
Atru.chr3.1087 Acer truncatum HOM05D004858 ORTHO05D005600 1.4e-37 159.5 105 75.2
COL.COLO4_11647 Corchorus olitorius HOM05D004858 ORTHO05D005600 1.4e-37 159.5 105 74.3
TAR381G0631 Trochodendron aralioides HOM05D004858 ORTHO05D005600 1.4e-37 159.5 105 73.3
CDE01G0584 Ceratophyllum demersum HOM05D004858 ORTHO05D005600 2.5e-37 158.7 103 73.8
CiPaw.08G148200 Carya illinoinensis HOM05D004858 ORTHO05D005600 4.2e-37 157.9 103 71.8
THA.LOC104807646 Tarenaya hassleriana HOM05D004858 ORTHO05D005600 5.5e-37 157.5 105 73.3
MD02G1193900 Malus domestica HOM05D004858 ORTHO05D005600 7.2e-37 157.1 103 72.8
Potri.007G008800 Populus trichocarpa HOM05D004858 ORTHO05D005600 1.2e-36 156.4 105 68.6
Prupe.6G213100 Prunus persica HOM05D004858 ORTHO05D005600 1.2e-36 156.4 105 71.4
CDE02G3413 Ceratophyllum demersum HOM05D004858 ORTHO05D005600 1.6e-36 156.0 103 71.8
Aqoxy6G01531 Aquilegia oxysepala HOM05D004858 ORTHO05D005600 2.1e-36 155.6 104 68.3
FvH4_1g18620 Fragaria vesca HOM05D004858 ORTHO05D005600 2.1e-36 155.6 104 72.1
FAN19G1409 Fragaria x ananassa HOM05D004858 ORTHO05D005600 2.1e-36 155.6 104 72.1
FAN26G1754 Fragaria x ananassa HOM05D004858 ORTHO05D005600 2.7e-36 155.2 104 72.1
FAN23G1848 Fragaria x ananassa HOM05D004858 ORTHO05D005600 3.6e-36 154.8 104 72.1
Gohir.A11G210700 Gossypium hirsutum HOM05D004858 ORTHO05D005600 3.6e-36 154.8 105 72.4
FAN28G0049 Fragaria x ananassa HOM05D004858 ORTHO05D005600 7.9e-36 153.7 104 71.2
THA.LOC104804193 Tarenaya hassleriana HOM05D004858 ORTHO05D005600 1.0e-35 153.3 105 68.6
Psat4g088320 Pisum sativum HOM05D004858 ORTHO05D005600 2.3e-35 152.1 92 79.3
arahy.Tifrunner.gnm1.ann1.J6YKXI Arachis hypogaea HOM05D004858 ORTHO05D005600 3.0e-35 151.8 91 78.0
Eucgr.I00649 Eucalyptus grandis HOM05D004858 ORTHO05D005600 3.0e-35 151.8 105 71.4
SGA_v2.0_scaffold121G33088 Striga asiatica HOM05D004858 ORTHO05D005600 3.0e-35 151.8 106 70.8
CiPaw.07G039500 Carya illinoinensis HOM05D004858 ORTHO05D005600 3.9e-35 151.4 103 69.9
MBI16_g31809_MAGBIO Magnolia biondii HOM05D004858 ORTHO05D005600 3.9e-35 151.4 103 68.9
Nn6g34570 Nelumbo nucifera HOM05D004858 ORTHO05D005600 5.1e-35 151.0 105 69.5
RcHm_v2.0_Chr2g0109411 Rosa chinensis HOM05D004858 ORTHO05D005600 6.7e-35 150.6 104 70.2
Duzib187G0061 Durio zibethinus HOM05D004858 ORTHO05D005600 8.8e-35 150.2 105 70.5
Gohir.D11G212400 Gossypium hirsutum HOM05D004858 ORTHO05D005600 8.8e-35 150.2 100 73.0
Gorai.007G228300 Gossypium raimondii HOM05D004858 ORTHO05D005600 8.8e-35 150.2 100 73.0
Manes.12G119200 Manihot esculenta HOM05D004858 ORTHO05D005600 1.1e-34 149.8 103 69.9
MSTRG.23644 Avicennia marina HOM05D004858 ORTHO05D005600 1.5e-34 149.4 105 67.6
Rhsim08G0089100 Rhododendron simsii HOM05D004858 ORTHO05D005600 1.5e-34 149.4 103 69.9
Duzib147G0425 Durio zibethinus HOM05D004858 ORTHO05D005600 2.0e-34 149.1 103 69.9
AL7G12840 Arabidopsis lyrata HOM05D004858 ORTHO05D005600 3.3e-34 148.3 106 69.8
Carub.0007s0239 Capsella rubella HOM05D004858 ORTHO05D005600 4.4e-34 147.9 106 69.8
CARHR246220 Cardamine hirsuta HOM05D004858 ORTHO05D005600 4.4e-34 147.9 106 69.8
Haze_03960 Corylus avellana HOM05D004858 ORTHO05D005600 4.4e-34 147.9 92 73.9
PSO675G0895 Papaver somniferum HOM05D004858 ORTHO05D005600 4.4e-34 147.9 105 67.6
Dinv23069 Davidia involucrata HOM05D004858 ORTHO05D005600 7.4e-34 147.1 101 69.3
PGR102G0524 Punica granatum HOM05D004858 ORTHO05D005600 7.4e-34 147.1 105 70.5
Actinidia36402 Actinidia chinensis HOM05D004858 ORTHO05D005600 9.7e-34 146.7 103 68.9
A08p22870 Brassica napus HOM05D004858 ORTHO05D005600 9.7e-34 146.7 106 68.9
MBI16_g05028_MAGBIO Magnolia biondii HOM05D004858 ORTHO05D005600 9.7e-34 146.7 101 70.3
SalBow3G1594 Salvia bowleyana HOM05D004858 ORTHO05D005600 9.7e-34 146.7 103 65.0
SalBow3G4557 Salvia bowleyana HOM05D004858 ORTHO05D005600 9.7e-34 146.7 103 65.0
TAR628G1120 Trochodendron aralioides HOM05D004858 ORTHO05D005600 9.7e-34 146.7 103 67.0
AT4G37830 Arabidopsis thaliana HOM05D004858 ORTHO05D005600 1.3e-33 146.4 106 68.9
Os03g0772800 Oryza sativa ssp. japonica HOM05D004858 ORTHO05D005600 1.7e-33 146.0 105 70.5
Thecc.01G079800 Theobroma cacao HOM05D004858 ORTHO05D005600 1.7e-33 146.0 92 76.1
unitig_46.g18678 Utricularia gibba HOM05D004858 ORTHO05D005600 1.7e-33 146.0 104 69.2
Cpa.g.sc129.47 Carica papaya HOM05D004858 ORTHO05D005600 2.2e-33 145.6 105 66.7
THA.LOC104824932 Tarenaya hassleriana HOM05D004858 ORTHO05D005600 2.2e-33 145.6 105 66.7
GSVIVG01006593001 Vitis vinifera HOM05D004858 ORTHO05D005600 2.8e-33 145.2 103 70.9
BcaC01g00373 Brassica carinata HOM05D004858 ORTHO05D005600 4.8e-33 144.4 106 68.9
BolC3t20143H Brassica oleracea HOM05D004858 ORTHO05D005600 4.8e-33 144.4 106 68.9
ClCG10G008050 Citrullus lanatus HOM05D004858 ORTHO05D005600 4.8e-33 144.4 105 68.6
Thhalv10026651m.g Eutrema salsugineum HOM05D004858 ORTHO05D005600 4.8e-33 144.4 106 68.9
Hma1.2p1_1953F.1_g308860 Hydrangea macrophylla HOM05D004858 ORTHO05D005600 4.8e-33 144.4 108 68.5
TWI77G0309 Tripterygium wilfordii HOM05D004858 ORTHO05D005600 4.8e-33 144.4 94 70.2
Sp7g35470 Schrenkiella parvula HOM05D004858 ORTHO05D005600 6.3e-33 144.1 106 67.0
CsaV3_3G007040 Cucumis sativus L. HOM05D004858 ORTHO05D005600 3.1e-32 141.7 105 66.7
Manes.13G106700 Manihot esculenta HOM05D004858 ORTHO05D005600 3.1e-32 141.7 108 66.7
Peaxi162Scf00118g01314 Petunia axillaris HOM05D004858 ORTHO05D005600 5.3e-32 141.0 105 64.8
EL10Ac6g14949 Beta vulgaris HOM05D004858 ORTHO05D005600 7.0e-32 140.6 106 65.1
CSS0041224 Camellia sinensis var. sinensis HOM05D004858 ORTHO05D005600 7.0e-32 140.6 105 64.8
CSS0047057 Camellia sinensis var. sinensis HOM05D004858 ORTHO05D005600 7.0e-32 140.6 105 64.8
Peaxi162Scf00096g01525 Petunia axillaris HOM05D004858 ORTHO05D005600 2.6e-31 138.7 106 67.9
Sed0006730 Sechium edule HOM05D004858 ORTHO05D005600 3.5e-31 138.3 103 63.1
unitig_37.g12385 Utricularia gibba HOM05D004858 ORTHO05D005600 5.9e-31 137.5 104 65.4
HanXRQChr09g0263081 Helianthus annuus HOM05D004858 ORTHO05D005600 7.7e-31 137.1 106 67.0
Sc16g0000840 Simmondsia chinensis HOM05D004858 ORTHO05D005600 7.7e-31 137.1 108 65.7
Cc07_g07610 Coffea canephora HOM05D004858 ORTHO05D005600 1.7e-30 136.0 105 62.9
C01p01370 Brassica napus HOM05D004858 ORTHO05D005600 2.2e-30 135.6 106 63.2
Oeu061526.2 Olea europaea HOM05D004858 ORTHO05D005600 2.2e-30 135.6 91 68.1
Nn5g30705 Nelumbo nucifera HOM05D004858 ORTHO05D005600 5.0e-30 134.4 92 70.7
Migut.L00438 Erythranthe guttata HOM05D004858 ORTHO05D005600 6.5e-30 134.0 106 64.2
HanXRQChr14g0447621 Helianthus annuus HOM05D004858 ORTHO05D005600 6.5e-30 134.0 106 64.2
Lsat_1_v5_gn_2_81581 Lactuca sativa HOM05D004858 ORTHO05D005600 6.5e-30 134.0 106 65.1
HPP92_024955 Vanilla planifolia HOM05D004858 ORTHO05D005600 6.5e-30 134.0 89 70.8
BolC1t00134H Brassica oleracea HOM05D004858 ORTHO05D005600 8.5e-30 133.7 106 62.3
DCAR_025838 Daucus carota HOM05D004858 ORTHO05D005600 8.5e-30 133.7 92 70.7
Solyc03g043850.3 Solanum lycopersicum HOM05D004858 ORTHO05D005600 8.5e-30 133.7 105 60.0
ECA232G2479 Erigeron canadensis HOM05D004858 ORTHO05D005600 1.9e-29 132.5 106 61.3
AUR62007965 Chenopodium quinoa HOM05D004858 ORTHO05D005600 2.5e-29 132.1 110 66.4
Duzib264G0490 Durio zibethinus HOM05D004858 ORTHO05D005600 4.2e-29 131.3 105 64.8
HanXRQChr07g0203771 Helianthus annuus HOM05D004858 ORTHO05D005600 4.2e-29 131.3 106 61.3
CiPaw.10G150100 Carya illinoinensis HOM05D004858 ORTHO05D005600 9.4e-29 130.2 74 75.7
Sabra07G0006800 Salix brachista HOM05D004858 ORTHO05D005600 1.6e-28 129.4 91 68.1
Aa31LG6G14730 Aethionema arabicum HOM05D004858 ORTHO05D005600 2.1e-28 129.0 132 53.8
DCAR_021459 Daucus carota HOM05D004858 ORTHO05D005600 2.7e-28 128.6 105 63.8
ECA238G2402 Erigeron canadensis HOM05D004858 ORTHO05D005600 3.6e-28 128.3 106 64.2
Dinv26980 Davidia involucrata HOM05D004858 ORTHO05D005600 6.1e-28 127.5 81 69.1
Zm00001eb058950 Zea mays HOM05D004858 ORTHO05D005600 6.1e-28 127.5 94 68.1
Lsat_1_v5_gn_4_159121 Lactuca sativa HOM05D004858 ORTHO05D005600 8.0e-28 127.1 99 63.6
Solyc02g091880.4 Solanum lycopersicum HOM05D004858 ORTHO05D005600 8.0e-28 127.1 106 64.2
Sopen02g036450 Solanum pennellii HOM05D004858 ORTHO05D005600 8.0e-28 127.1 106 64.2
Oeu014311.1 Olea europaea HOM05D004858 ORTHO05D005600 1.4e-27 126.3 91 63.7
ATR0767G115 Amborella trichopoda HOM05D004858 ORTHO05D005600 6.7e-27 124.0 91 64.8
MD15G1304000 Malus domestica HOM05D004858 ORTHO05D005600 1.1e-26 123.2 103 58.3
Nitab4.5_0026287g0010 Nicotiana tabacum HOM05D004858 ORTHO05D005600 2.6e-26 122.1 91 62.6
PGSC0003DMG400017913 Solanum tuberosum HOM05D004858 ORTHO05D005600 9.7e-26 120.2 92 62.0
CAN.G1061.6 Capsicum annuum HOM05D004858 ORTHO05D005600 1.7e-25 119.4 106 58.5
HPP92_021258 Vanilla planifolia HOM05D000682 ORTHO05D000510 4.8e-25 117.9 87 63.2
Mapoly0043s0104 Marchantia polymorpha HOM05D004858 ORTHO05D005600 5.3e-24 114.4 92 58.7
AUR62003145 Chenopodium quinoa HOM05D004858 ORTHO05D005600 9.1e-24 113.6 97 63.9
PGSC0003DMG400030258 Solanum tuberosum HOM05D004858 ORTHO05D005600 1.0e-22 110.2 94 58.5
CSS0011371 Camellia sinensis var. sinensis HOM05D004858 ORTHO05D005600 1.3e-22 109.8 94 58.5
Nitab4.5_0007790g0010 Nicotiana tabacum HOM05D004858 ORTHO05D005600 2.2e-22 109.0 93 62.4
BraA08t34250Z Brassica rapa HOM05D004858 ORTHO05D005600 3.4e-18 95.1 82 59.8
BraA01t00120Z Brassica rapa HOM05D004858 ORTHO05D005600 4.4e-18 94.7 109 50.5
Pp3c5_3360 Physcomitrium patens HOM05D004858 ORTHO05D005600 5.7e-18 94.4 85 54.1
vmacro18001 Vaccinium macrocarpon HOM05D004858 ORTHO05D005600 5.7e-18 94.4 50 78.0
MELO3C014946.2 Cucumis melo HOM05D004858 ORTHO05D005600 2.8e-17 92.0 77 61.0
C03p79020 Brassica napus HOM05D004858 ORTHO05D005600 6.3e-17 90.9 77 61.0
Nitab4.5_0002639g0030 Nicotiana tabacum HOM05D004858 ORTHO05D005600 5.4e-16 87.8 77 54.5
AagrBONN_evm.TU.Sc2ySwM_344.1653 Anthoceros agrestis HOM05D004858 ORTHO05D005600 1.6e-15 86.3 100 48.0
CSS0003752 Camellia sinensis var. sinensis HOM05D004858 ORTHO05D005600 2.0e-15 85.9 77 58.4
PGSC0003DMG400030628 Solanum tuberosum HOM05D004858 ORTHO05D005600 3.5e-15 85.1 115 47.0
Hund16598 Selenicereus undatus HOM05D004858 ORTHO05D005600 2.2e-14 82.4 82 58.5
Ah.03g139600 Amaranthus hybridus HOM05D004858 ORTHO05D005600 2.9e-14 82.0 80 57.5
Sc03g0000690 Simmondsia chinensis HOM05D004858 ORTHO05D005600 2.9e-14 82.0 78 59.0
Nitab4.5_0000396g0060 Nicotiana tabacum HOM05D004858 ORTHO05D005600 2.7e-12 75.5 93 48.4
CBR_g50891 Chara braunii HOM05D004858 ORTHO05D005600 8.8e-11 70.5 82 47.6
Pp3c6_25050 Physcomitrium patens HOM05D004858 ORTHO05D005600 8.8e-11 70.5 75 48.0
SEGI_12659 Sequoiadendron giganteum HOM05D004858 ORTHO05D005600 1.5e-10 69.7 74 47.3
Pp3c13_15160 Physcomitrium patens HOM05D004858 ORTHO05D005600 9.8e-10 67.0 63 49.2
arahy.Tifrunner.gnm1.ann1.0N5P6D Arachis hypogaea HOM05D004858 ORTHO05D005600 1.7e-09 66.2 55 67.3
arahy.Tifrunner.gnm1.ann1.HTA6FY Arachis hypogaea HOM05D004858 ORTHO05D005600 1.7e-09 66.2 55 67.3
vmacro22430 Vaccinium macrocarpon HOM05D004858 ORTHO05D005600 2.4e-08 62.4 40 65.0
A01p01210 Brassica napus HOM05D004858 ORTHO05D005600 4.1e-08 61.6 62 51.6
PRCOL_00006369 Prasinoderma coloniale HOM05D004858 ORTHO05D005600 4.5e-07 58.2 80 40.0
SHI12046 Sapria himalayana HOM05D004858 ORTHO05D005600 4.5e-07 58.2 42 59.5
MCO08G099 Micromonas commoda HOM05D004858 ORTHO05D005600 8.6e-06 53.9 95 35.8


User provided reference genes

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