Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_22070_v3 Cicer arietinum L. HOM05D006379 ORTHO05D007830 4.9e-137 491.1 243 100.0
TPR.G29030 Trifolium pratense HOM05D006379 ORTHO05D007830 4.2e-72 275.4 248 62.9
Medtr4g098490 Medicago truncatula HOM05D006379 ORTHO05D007830 1.2e-71 273.9 248 62.1
Psat4g078880 Pisum sativum HOM05D006379 ORTHO05D007830 2.7e-71 272.7 245 60.8
Lj4g0008037 Lotus japonicus HOM05D006379 ORTHO05D007830 1.1e-69 267.3 246 60.2
Phvul.003G230200 Phaseolus vulgaris HOM05D006379 ORTHO05D007830 2.6e-66 256.1 244 59.4
Glyma.17G154900 Glycine max HOM05D006379 ORTHO05D007830 1.0e-65 254.2 244 59.4
Glyma.05G112100 Glycine max HOM05D006379 ORTHO05D007830 2.5e-64 249.6 244 58.6
VMungo0251G0261 Vigna mungo HOM05D000740 ORTHO05D005071 8.8e-62 241.1 243 56.8
Lalb_Chr05g0220541 Lupinus albus HOM05D006379 ORTHO05D007830 4.8e-60 235.3 244 55.7
Manes.15G169000 Manihot esculenta HOM05D006379 ORTHO05D007830 1.7e-57 226.9 215 58.1
TWI81G0344 Tripterygium wilfordii HOM05D006379 ORTHO05D007830 5.0e-57 225.3 218 57.8
GSVIVG01013191001 Vitis vinifera HOM05D006379 ORTHO05D007830 5.0e-57 225.3 222 55.9
Dinv25202 Davidia involucrata HOM05D006379 ORTHO05D007830 6.5e-57 224.9 250 52.0
Lj2A242T73 Lonicera japonica HOM05D006379 ORTHO05D007830 8.5e-57 224.6 249 53.8
Dinv28941 Davidia involucrata HOM05D006379 ORTHO05D007830 9.4e-56 221.1 250 51.6
Atru.chr6.1742 Acer truncatum HOM05D006379 ORTHO05D007830 4.7e-55 218.8 216 56.5
TAR362G0922 Trochodendron aralioides HOM05D006379 ORTHO05D007830 6.1e-55 218.4 252 52.4
Thecc.03G229900 Theobroma cacao HOM05D006379 ORTHO05D007830 1.0e-54 217.6 238 52.1
Prupe.5G039500 Prunus persica HOM05D006379 ORTHO05D007830 1.4e-54 217.2 209 56.0
Gorai.008G227300 Gossypium raimondii HOM05D006379 ORTHO05D007830 1.8e-54 216.9 227 54.6
CiPaw.12G062300 Carya illinoinensis HOM05D006379 ORTHO05D007830 3.0e-54 216.1 220 55.5
vmacro14164 Vaccinium macrocarpon HOM05D006379 ORTHO05D007830 3.9e-54 215.7 207 55.6
MSTRG.12139 Avicennia marina HOM05D006379 ORTHO05D007830 6.7e-54 214.9 223 53.8
Gohir.D12G211700 Gossypium hirsutum HOM05D006379 ORTHO05D007830 6.7e-54 214.9 227 53.7
Nn4g25240 Nelumbo nucifera HOM05D006379 ORTHO05D007830 6.7e-54 214.9 224 55.8
Potri.003G090400 Populus trichocarpa HOM05D006379 ORTHO05D007830 6.7e-54 214.9 247 50.2
QL12p006043 Quercus lobata HOM05D006379 ORTHO05D007830 6.7e-54 214.9 215 55.3
Cfa012418 Carpinus fangiana HOM05D006379 ORTHO05D007830 8.8e-54 214.5 221 54.3
Haze_08258 Corylus avellana HOM05D006379 ORTHO05D007830 8.8e-54 214.5 221 54.3
Aqoxy5G02873 Aquilegia oxysepala HOM05D006379 ORTHO05D007830 1.1e-53 214.2 236 52.1
BolC8t47934H Brassica oleracea HOM05D006379 ORTHO05D007830 1.1e-53 214.2 229 52.4
SGA_v2.0_scaffold104G30206 Striga asiatica HOM05D006379 ORTHO05D007830 1.1e-53 214.2 257 47.9
Gohir.A12G209000 Gossypium hirsutum HOM05D006379 ORTHO05D007830 1.5e-53 213.8 227 53.3
BraA08t32902Z Brassica rapa HOM05D006379 ORTHO05D007830 2.0e-53 213.4 215 54.0
Nitab4.5_0002373g0030 Nicotiana tabacum HOM05D006379 ORTHO05D007830 2.0e-53 213.4 219 54.8
AL1G46800 Arabidopsis lyrata HOM05D006379 ORTHO05D007830 2.6e-53 213.0 224 53.1
Aa31LG2G13410 Aethionema arabicum HOM05D006379 ORTHO05D007830 3.3e-53 212.6 212 54.7
Actinidia09219 Actinidia chinensis HOM05D006379 ORTHO05D007830 4.4e-53 212.2 232 53.4
Sabra03G0060200 Salix brachista HOM05D006379 ORTHO05D007830 4.4e-53 212.2 215 55.3
Sopen08g025630 Solanum pennellii HOM05D006379 ORTHO05D007830 4.4e-53 212.2 222 51.8
Solyc08g077050.3 Solanum lycopersicum HOM05D006379 ORTHO05D007830 5.7e-53 211.8 222 51.8
PGSC0003DMG400017532 Solanum tuberosum HOM05D006379 ORTHO05D007830 5.7e-53 211.8 222 51.8
THA.LOC104814439 Tarenaya hassleriana HOM05D006379 ORTHO05D007830 5.7e-53 211.8 216 55.1
FAN18G2446 Fragaria x ananassa HOM05D006379 ORTHO05D007830 7.4e-53 211.5 249 49.4
Ciclev10032819m.g Citrus clementina HOM05D006379 ORTHO05D007830 9.7e-53 211.1 216 54.6
COL.COLO4_17063 Corchorus olitorius HOM05D006379 ORTHO05D007830 1.3e-52 210.7 226 52.2
FvH4_5g21760 Fragaria vesca HOM05D006379 ORTHO05D007830 1.3e-52 210.7 249 49.0
RcHm_v2.0_Chr7g0209251 Rosa chinensis HOM05D006379 ORTHO05D007830 1.3e-52 210.7 220 53.2
AT1G32550 Arabidopsis thaliana HOM05D006379 ORTHO05D007830 1.7e-52 210.3 216 53.7
CAN.G1659.5 Capsicum annuum HOM05D006379 ORTHO05D007830 1.7e-52 210.3 222 51.4
Cc08_g02510 Coffea canephora HOM05D006379 ORTHO05D007830 1.7e-52 210.3 216 53.7
Hma1.2p1_0991F.1_g245020 Hydrangea macrophylla HOM05D006379 ORTHO05D007830 1.7e-52 210.3 222 53.2
CsaV3_3G049310 Cucumis sativus L. HOM05D006379 ORTHO05D007830 2.2e-52 209.9 219 53.4
Duzib084G0654 Durio zibethinus HOM05D006379 ORTHO05D007830 2.2e-52 209.9 229 52.8
FAN13G0612 Fragaria x ananassa HOM05D006379 ORTHO05D007830 2.2e-52 209.9 225 51.1
MD16G1276600 Malus domestica HOM05D006379 ORTHO05D007830 3.7e-52 209.1 220 53.2
Eucgr.E00291 Eucalyptus grandis HOM05D006379 ORTHO05D007830 4.8e-52 208.8 222 52.7
BcaC07g37588 Brassica carinata HOM05D006379 ORTHO05D007830 6.3e-52 208.4 224 51.8
Os03g0685000 Oryza sativa ssp. japonica HOM05D006379 ORTHO05D007830 6.3e-52 208.4 225 52.0
AL1G48020 Arabidopsis lyrata HOM05D006379 ORTHO05D007830 8.2e-52 208.0 231 50.6
BcaB07g32954 Brassica carinata HOM05D006379 ORTHO05D007830 8.2e-52 208.0 220 51.8
A08p09010 Brassica napus HOM05D006379 ORTHO05D007830 8.2e-52 208.0 210 53.3
CANSAT21G0322 Cannabis sativa HOM05D006379 ORTHO05D007830 8.2e-52 208.0 221 52.0
ATR0796G077 Amborella trichopoda HOM05D006379 ORTHO05D007830 1.1e-51 207.6 187 58.3
Thhalv10008887m.g Eutrema salsugineum HOM05D006379 ORTHO05D007830 1.1e-51 207.6 208 53.8
Hund14407 Selenicereus undatus HOM05D006379 ORTHO05D007830 1.1e-51 207.6 244 49.2
ECA240G2404 Erigeron canadensis HOM05D006379 ORTHO05D007830 1.4e-51 207.2 231 51.5
SalBow6G2021 Salvia bowleyana HOM05D006379 ORTHO05D007830 1.4e-51 207.2 209 55.0
A09p33660 Brassica napus HOM05D006379 ORTHO05D007830 2.4e-51 206.5 235 49.4
BraA09t38912Z Brassica rapa HOM05D006379 ORTHO05D007830 2.4e-51 206.5 235 49.4
Carub.0001s3096 Capsella rubella HOM05D006379 ORTHO05D007830 2.4e-51 206.5 216 52.8
HanXRQChr02g0043511 Helianthus annuus HOM05D006379 ORTHO05D007830 2.4e-51 206.5 239 50.6
MD06G1032600 Malus domestica HOM05D006379 ORTHO05D007830 3.1e-51 206.1 220 52.7
AUR62007269 Chenopodium quinoa HOM05D006379 ORTHO05D007830 4.1e-51 205.7 241 47.7
DCAR_024971 Daucus carota HOM05D006379 ORTHO05D007830 4.1e-51 205.7 219 54.8
CARHR032000 Cardamine hirsuta HOM05D006379 ORTHO05D007830 5.3e-51 205.3 227 49.8
Zm00001eb217230 Zea mays HOM05D006379 ORTHO05D007830 7.0e-51 204.9 192 56.2
Sp1g28350 Schrenkiella parvula HOM05D006379 ORTHO05D007830 9.1e-51 204.5 210 52.4
PGR004G2142 Punica granatum HOM05D006379 ORTHO05D007830 1.2e-50 204.1 222 52.7
HPP92_026045 Vanilla planifolia HOM05D006379 ORTHO05D007830 1.2e-50 204.1 211 53.6
Sc07g0008750 Simmondsia chinensis HOM05D006379 ORTHO05D007830 1.5e-50 203.8 221 52.9
Sed0015821 Sechium edule HOM05D006379 ORTHO05D007830 2.6e-50 203.0 219 52.1
Ah.12g054900 Amaranthus hybridus HOM05D006379 ORTHO05D007830 5.9e-50 201.8 215 53.0
HPP92_013491 Vanilla planifolia HOM05D006379 ORTHO05D007830 5.9e-50 201.8 192 55.7
Sed0017672 Sechium edule HOM05D006379 ORTHO05D007830 7.7e-50 201.4 216 50.9
PSO170G4107 Papaver somniferum HOM05D006379 ORTHO05D007830 3.8e-49 199.1 184 57.1
PSO357G0477 Papaver somniferum HOM05D006379 ORTHO05D007830 3.8e-49 199.1 184 57.1
Migut.A01031 Erythranthe guttata HOM05D006379 ORTHO05D007830 8.5e-49 198.0 209 52.2
AUR62018730 Chenopodium quinoa HOM05D006379 ORTHO05D007830 1.1e-48 197.6 251 46.2
MBI18_g03873_MAGBIO Magnolia biondii HOM05D006379 ORTHO05D007830 1.4e-46 190.7 222 49.5
arahy.Tifrunner.gnm1.ann1.QRW6GR Arachis hypogaea HOM05D006379 ORTHO05D007830 5.2e-46 188.7 246 46.3
SMO134G0248 Selaginella moellendorffii HOM05D006379 ORTHO05D007830 1.4e-43 180.6 186 52.7
SEGI_19144 Sequoiadendron giganteum HOM05D006379 ORTHO05D007830 1.8e-43 180.3 184 52.7
AagrBONN_evm.TU.Sc2ySwM_228.4201 Anthoceros agrestis HOM05D006379 ORTHO05D007830 7.7e-42 174.9 187 50.3
Mapoly0177s0016 Marchantia polymorpha HOM05D006379 ORTHO05D007830 1.0e-41 174.5 188 51.1
Nitab4.5_0001276g0050 Nicotiana tabacum HOM05D006379 ORTHO05D007830 1.9e-40 170.2 219 48.9
Peaxi162Scf00006g00426 Petunia axillaris HOM05D006379 ORTHO05D007830 2.7e-39 166.4 208 49.0
Pp3c17_15760 Physcomitrium patens HOM05D006379 ORTHO05D007830 1.8e-38 163.7 187 46.0
BcaB04g17950 Brassica carinata HOM05D006379 ORTHO05D007830 4.0e-38 162.5 190 48.4
BolC5t31928H Brassica oleracea HOM05D006379 ORTHO05D007830 5.7e-37 158.7 165 52.1
Duzib205G0717 Durio zibethinus HOM05D006379 ORTHO05D007830 8.3e-36 154.8 226 43.4
C05p32020 Brassica napus HOM05D006379 ORTHO05D007830 1.1e-35 154.5 165 50.9
arahy.Tifrunner.gnm1.ann1.AEP3KG Arachis hypogaea HOM05D006379 ORTHO05D007830 9.1e-35 151.4 153 56.9
arahy.Tifrunner.gnm1.ann1.YTUI1C Arachis hypogaea HOM05D006379 ORTHO05D007830 1.6e-34 150.6 153 56.9
CSS0003148 Camellia sinensis var. sinensis HOM05D006379 ORTHO05D007830 1.0e-33 147.9 180 48.3
CBR_g24310 Chara braunii HOM05D006379 ORTHO05D007830 1.7e-33 147.1 172 48.8
EL10Ac5g12142 Beta vulgaris HOM05D006379 ORTHO05D007830 2.2e-33 146.7 226 41.6
unitig_744.g24478 Utricularia gibba HOM05D006379 ORTHO05D007830 1.5e-32 144.1 192 45.3
CSS0039884 Camellia sinensis var. sinensis HOM05D006379 ORTHO05D007830 2.6e-29 133.3 154 51.9
FAN04G0985 Fragaria x ananassa HOM05D006379 ORTHO05D007830 2.4e-27 126.7 244 37.3
ClCG09G012080 Citrullus lanatus HOM05D006379 ORTHO05D007830 1.2e-26 124.4 125 55.2
Cre03.g183850 Chlamydomonas reinhardtii HOM05D001025 ORTHO05D007830 2.0e-26 123.6 209 37.8
CSS0002978 Camellia sinensis var. sinensis HOM05D006379 ORTHO05D007830 5.9e-26 122.1 149 49.7
MELO3C003395.2 Cucumis melo HOM05D006379 ORTHO05D007830 9.5e-24 114.8 142 48.6
FAN10G1237 Fragaria x ananassa HOM05D006379 ORTHO05D007830 9.5e-24 114.8 125 51.2
PRCOL_00004887 Prasinoderma coloniale HOM05D006379 ORTHO05D007830 1.6e-23 114.0 188 37.8
Cpa.g.sc71.69 Carica papaya HOM05D006379 ORTHO05D007830 3.6e-23 112.8 53 94.3
Lsat_1_v5_gn_6_78541 Lactuca sativa HOM05D006379 ORTHO05D007830 3.6e-23 112.8 138 49.3
FAN20G0396 Fragaria x ananassa HOM05D006379 ORTHO05D007830 4.0e-22 109.4 105 53.3
Nitab4.5_0000089g0020 Nicotiana tabacum HOM05D006379 ORTHO05D007830 6.8e-22 108.6 190 40.0
MCO07G595 Micromonas commoda HOM05D006379 ORTHO05D007830 4.5e-18 95.9 236 32.2
Potri.003G176400 Populus trichocarpa HOM05D006379 ORTHO05D007830 2.0e-13 80.5 145 42.1
Rhsim07G0125500 Rhododendron simsii HOM05D006379 ORTHO05D007830 1.2e-10 71.2 224 28.6
FAN10G3344 Fragaria x ananassa HOM05D000053 ORTHO05D000035 1.3e-09 67.8 75 50.7
FAN08G2939 Fragaria x ananassa HOM05D006379 ORTHO05D007830 1.5e-08 64.3 190 30.5
CSS0019133 Camellia sinensis var. sinensis HOM05D006379 ORTHO05D007830 3.6e-07 59.7 26 96.2
ClCG09G012090 Citrullus lanatus HOM05D006379 ORTHO05D007830 4.7e-07 59.3 47 63.8


User provided reference genes

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