Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_22022_v3 Cicer arietinum L. HOM05D006103 ORTHO05D007468 2.9e-163 578.6 306 100.0
Medtr4g099190 Medicago truncatula HOM05D006103 ORTHO05D007468 7.5e-119 431.0 329 73.6
Glyma.05G067000 Glycine max HOM05D006103 ORTHO05D007468 1.5e-114 416.8 307 73.3
Lj4g0004061 Lotus japonicus HOM05D006103 ORTHO05D007468 8.0e-113 411.0 334 63.5
arahy.Tifrunner.gnm1.ann1.GKQN4T Arachis hypogaea HOM05D006103 ORTHO05D007468 3.1e-112 409.1 325 67.4
Lalb_Chr16g0386381 Lupinus albus HOM05D006103 ORTHO05D007468 1.3e-110 403.7 318 68.9
VMungo0251G0880 Vigna mungo HOM05D006103 ORTHO05D007468 3.7e-110 402.1 313 70.0
Phvul.003G226000 Phaseolus vulgaris HOM05D006103 ORTHO05D007468 4.9e-110 401.7 318 67.9
Psat4g074520 Pisum sativum HOM05D006103 ORTHO05D007468 6.0e-108 394.8 306 69.9
TPR.G25737 Trifolium pratense HOM05D006103 ORTHO05D007468 1.1e-104 384.0 343 63.6
FvH4_5g20690 Fragaria vesca HOM05D006103 ORTHO05D007468 4.3e-98 362.1 328 58.2
FAN18G2558 Fragaria x ananassa HOM05D006103 ORTHO05D007468 5.6e-98 361.7 329 58.1
FAN04G1103 Fragaria x ananassa HOM05D006103 ORTHO05D007468 2.8e-97 359.4 319 63.3
FAN08G0488 Fragaria x ananassa HOM05D006103 ORTHO05D007468 6.2e-97 358.2 322 58.4
FAN13G0941 Fragaria x ananassa HOM05D006103 ORTHO05D007468 4.0e-96 355.5 322 62.4
Prupe.5G053300 Prunus persica HOM05D006103 ORTHO05D007468 1.2e-95 354.0 327 59.3
RcHm_v2.0_Chr7g0206421 Rosa chinensis HOM05D006103 ORTHO05D007468 1.5e-95 353.6 331 59.8
CiPaw.11G084400 Carya illinoinensis HOM05D006103 ORTHO05D007468 2.2e-94 349.7 325 57.5
Duzib205G0801 Durio zibethinus HOM05D006103 ORTHO05D007468 3.8e-94 349.0 309 62.1
MD04G1054200 Malus domestica HOM05D006103 ORTHO05D007468 2.4e-93 346.3 341 56.6
TWI60G1123 Tripterygium wilfordii HOM05D006103 ORTHO05D007468 3.2e-93 345.9 308 64.3
CSS0027189 Camellia sinensis var. sinensis HOM05D006103 ORTHO05D007468 4.2e-93 345.5 305 64.3
TAR375G0262 Trochodendron aralioides HOM05D006103 ORTHO05D007468 1.6e-92 343.6 315 62.2
Dinv25153 Davidia involucrata HOM05D006103 ORTHO05D007468 2.1e-92 343.2 307 63.5
Gorai.004G191100 Gossypium raimondii HOM05D006103 ORTHO05D007468 2.1e-92 343.2 313 61.0
Gohir.D08G182200 Gossypium hirsutum HOM05D006103 ORTHO05D007468 2.7e-92 342.8 313 61.0
Haze_08348 Corylus avellana HOM05D006103 ORTHO05D007468 3.0e-91 339.3 323 57.6
Thecc.03G237900 Theobroma cacao HOM05D006103 ORTHO05D007468 5.1e-91 338.6 324 59.3
Ciclev10021261m.g Citrus clementina HOM05D006103 ORTHO05D007468 6.6e-91 338.2 313 61.7
Nitab4.5_0000506g0180 Nicotiana tabacum HOM05D006103 ORTHO05D007468 6.6e-91 338.2 325 57.2
PGR042G3635 Punica granatum HOM05D006103 ORTHO05D007468 8.7e-91 337.8 323 59.8
Sabra01G0119800 Salix brachista HOM05D006103 ORTHO05D007468 1.1e-90 337.4 316 60.1
CSS0016826 Camellia sinensis var. sinensis HOM05D006103 ORTHO05D007468 1.9e-90 336.7 324 56.2
BraA02t08094Z Brassica rapa HOM05D006103 ORTHO05D007468 5.6e-90 335.1 298 61.7
Actinidia03414 Actinidia chinensis HOM05D006103 ORTHO05D007468 7.3e-90 334.7 319 58.6
Gohir.A08G162200 Gossypium hirsutum HOM05D006103 ORTHO05D007468 7.3e-90 334.7 313 60.1
QL12p008443 Quercus lobata HOM05D006103 ORTHO05D007468 7.3e-90 334.7 312 61.5
CANSAT21G0053 Cannabis sativa HOM05D006103 ORTHO05D007468 9.6e-90 334.3 307 59.3
CAN.G422.12 Capsicum annuum HOM05D006103 ORTHO05D007468 9.6e-90 334.3 317 58.7
Potri.001G149800 Populus trichocarpa HOM05D006103 ORTHO05D007468 9.6e-90 334.3 308 56.8
Atru.chr9.1156 Acer truncatum HOM05D006103 ORTHO05D007468 1.6e-89 333.6 307 62.2
CARHR174300 Cardamine hirsuta HOM05D006103 ORTHO05D007468 2.8e-89 332.8 301 56.5
ClCG10G002100 Citrullus lanatus HOM05D006103 ORTHO05D007468 2.8e-89 332.8 333 54.7
HanXRQChr03g0089621 Helianthus annuus HOM05D006103 ORTHO05D007468 2.8e-89 332.8 295 63.4
Manes.17G024600 Manihot esculenta HOM05D006103 ORTHO05D007468 2.8e-89 332.8 311 61.1
A02p30800 Brassica napus HOM05D006103 ORTHO05D007468 6.2e-89 331.6 298 61.1
Eucgr.E00334 Eucalyptus grandis HOM05D006103 ORTHO05D007468 6.2e-89 331.6 340 57.4
Sed0003222 Sechium edule HOM05D006103 ORTHO05D007468 6.2e-89 331.6 331 54.7
CsaV3_3G002190 Cucumis sativus L. HOM05D006103 ORTHO05D007468 1.1e-88 330.9 340 53.5
Solyc06g060990.4 Solanum lycopersicum HOM05D006103 ORTHO05D007468 1.1e-88 330.9 325 56.0
Sopen06g021130 Solanum pennellii HOM05D006103 ORTHO05D007468 1.1e-88 330.9 324 59.3
Cc08_g11160 Coffea canephora HOM05D006103 ORTHO05D007468 5.3e-88 328.6 312 54.8
Lsat_1_v5_gn_6_94780 Lactuca sativa HOM05D006103 ORTHO05D007468 1.2e-87 327.4 316 59.8
PGSC0003DMG400026583 Solanum tuberosum HOM05D006103 ORTHO05D007468 1.5e-87 327.0 322 58.4
BcaC03g16934 Brassica carinata HOM05D006103 ORTHO05D007468 3.4e-87 325.9 299 59.5
Lj8C280G0 Lonicera japonica HOM05D006103 ORTHO05D007468 3.4e-87 325.9 295 56.3
C02p48360 Brassica napus HOM05D006103 ORTHO05D007468 5.8e-87 325.1 298 59.4
BolC2t10867H Brassica oleracea HOM05D006103 ORTHO05D007468 5.8e-87 325.1 298 59.4
MELO3C013891.2 Cucumis melo HOM05D006103 ORTHO05D007468 9.9e-87 324.3 347 53.3
Sp2g11900 Schrenkiella parvula HOM05D006103 ORTHO05D007468 1.7e-86 323.6 315 55.6
Carub.0008s0066 Capsella rubella HOM05D006103 ORTHO05D007468 2.9e-86 322.8 307 58.6
C02p28550 Brassica napus HOM05D006103 ORTHO05D007468 4.9e-86 322.0 298 59.4
BolC2t08897H Brassica oleracea HOM05D006103 ORTHO05D007468 4.9e-86 322.0 298 59.4
Lj8A286T53 Lonicera japonica HOM05D006103 ORTHO05D007468 8.4e-86 321.2 311 59.5
PSO063G5173 Papaver somniferum HOM05D006103 ORTHO05D007468 2.4e-85 319.7 328 56.7
Cpa.g.sc98.70 Carica papaya HOM05D006103 ORTHO05D007468 9.3e-85 317.8 322 53.4
Oeu054287.1 Olea europaea HOM05D006103 ORTHO05D007468 1.2e-84 317.4 323 52.9
BcaC03g15262 Brassica carinata HOM05D006103 ORTHO05D007468 1.6e-84 317.0 298 58.7
AUR62007192 Chenopodium quinoa HOM05D006103 ORTHO05D007468 3.5e-84 315.8 305 54.4
AL8G11110 Arabidopsis lyrata HOM05D006103 ORTHO05D007468 1.3e-83 313.9 303 58.1
MSTRG.13771 Avicennia marina HOM05D006103 ORTHO05D007468 1.3e-83 313.9 317 56.2
Thhalv10000969m.g Eutrema salsugineum HOM05D006103 ORTHO05D007468 1.7e-83 313.5 315 56.8
MBI04_g46823_MAGBIO Magnolia biondii HOM05D006103 ORTHO05D007468 6.6e-83 311.6 301 58.5
SGA_v2.0_scaffold20G09256 Striga asiatica HOM05D006103 ORTHO05D007468 1.1e-82 310.8 313 55.9
AT5G47090 Arabidopsis thaliana HOM05D006103 ORTHO05D007468 9.6e-82 307.8 308 58.1
DCAR_004514 Daucus carota HOM05D006103 ORTHO05D007468 1.3e-81 307.4 325 55.7
Aqoxy3G02600 Aquilegia oxysepala HOM05D006103 ORTHO05D007468 3.1e-80 302.8 308 58.4
CDE02G1890 Ceratophyllum demersum HOM05D006103 ORTHO05D007468 6.4e-78 295.0 310 54.2
vmacro00388 Vaccinium macrocarpon HOM05D006103 ORTHO05D007468 2.4e-77 293.1 400 43.5
ECA240G1687 Erigeron canadensis HOM05D005140 ORTHO05D006288 3.2e-77 292.7 279 58.1
Migut.E01036 Erythranthe guttata HOM05D006103 ORTHO05D007468 7.9e-76 288.1 300 55.0
Migut.E01310 Erythranthe guttata HOM05D006103 ORTHO05D007468 7.9e-76 288.1 300 55.0
Aa31LG9G5870 Aethionema arabicum HOM05D006103 ORTHO05D007468 5.1e-75 285.4 355 50.1
EL10Ac5g12236 Beta vulgaris HOM05D006103 ORTHO05D007468 6.7e-75 285.0 331 47.4
unitig_699.g19773 Utricularia gibba HOM05D006103 ORTHO05D007468 6.7e-75 285.0 337 47.5
SHI07660 Sapria himalayana HOM05D006103 ORTHO05D007468 7.4e-74 281.6 295 54.6
GSVIVG01013285001 Vitis vinifera HOM05D006103 ORTHO05D007468 1.5e-71 273.9 194 68.6
Peaxi162Scf00190g00616 Petunia axillaris HOM05D006103 ORTHO05D007468 3.4e-71 272.7 269 59.5
Hund11307 Selenicereus undatus HOM05D006103 ORTHO05D007468 1.0e-70 271.2 262 58.4
Zm00001eb377550 Zea mays HOM05D006103 ORTHO05D007468 1.0e-70 271.2 324 47.8
Os06g0139700 Oryza sativa ssp. japonica HOM05D006103 ORTHO05D007468 8.4e-70 268.1 313 47.9
BcaC07g39778 Brassica carinata HOM05D006103 ORTHO05D007468 1.6e-68 263.8 298 53.7
Sc22g0001160 Simmondsia chinensis HOM05D006103 ORTHO05D007468 1.6e-68 263.8 203 61.6
Dinv28889 Davidia involucrata HOM05D006103 ORTHO05D007468 3.5e-68 262.7 196 64.3
Rhsim04G0176100 Rhododendron simsii HOM05D006103 ORTHO05D007468 1.8e-67 260.4 259 55.6
CANSAT21G0160 Cannabis sativa HOM05D001479 ORTHO05D007468 1.5e-66 257.3 189 66.7
CDE11G0859 Ceratophyllum demersum HOM05D006103 ORTHO05D007468 2.5e-66 256.5 249 57.0
CANSAT21G1035 Cannabis sativa HOM05D006103 ORTHO05D007468 5.7e-66 255.4 182 67.6
ATR0665G401 Amborella trichopoda HOM05D006103 ORTHO05D007468 5.3e-64 248.8 305 49.5
SEGI_16450 Sequoiadendron giganteum HOM05D006103 ORTHO05D007468 5.3e-64 248.8 312 48.7
Nitab4.5_0013289g0030 Nicotiana tabacum HOM05D006103 ORTHO05D007468 1.3e-59 234.2 238 58.8
HPP92_014398 Vanilla planifolia HOM05D006103 ORTHO05D007468 2.1e-52 210.3 189 52.4
Hma1.2p1_1672F.1_g296810 Hydrangea macrophylla HOM05D006103 ORTHO05D007468 4.3e-50 202.6 213 51.2
AUR62018811 Chenopodium quinoa HOM05D006103 ORTHO05D007468 2.2e-49 200.3 191 53.9
BolC8t50609H Brassica oleracea HOM05D006103 ORTHO05D007468 1.1e-48 198.0 154 62.3
Pp3c16_2730 Physcomitrium patens HOM05D006103 ORTHO05D007468 1.8e-48 197.2 334 38.3
C08p30000 Brassica napus HOM05D006103 ORTHO05D007468 2.6e-42 176.8 140 61.4
SMO171G0121 Selaginella moellendorffii HOM05D006103 ORTHO05D007468 4.4e-42 176.0 323 36.2
Lj8A284T15 Lonicera japonica HOM05D006103 ORTHO05D007468 8.2e-41 171.8 137 61.3
AagrBONN_evm.TU.Sc2ySwM_368.2081 Anthoceros agrestis HOM05D006103 ORTHO05D007468 4.5e-39 166.0 314 35.7
CBR_g49667 Chara braunii HOM05D006103 ORTHO05D007468 1.1e-34 151.4 413 29.3
AL8G11000 Arabidopsis lyrata HOM05D006103 ORTHO05D007468 2.3e-27 127.1 151 55.0
RcHm_v2.0_Chr4g0446321 Rosa chinensis HOM05D006103 ORTHO05D007468 1.1e-24 118.2 176 42.6
Actinidia02205 Actinidia chinensis HOM05D006103 ORTHO05D007468 2.2e-22 110.5 69 73.9
Cfa012348 Carpinus fangiana HOM05D006103 ORTHO05D007468 2.9e-22 110.2 84 64.3
SHI06573 Sapria himalayana HOM05D006103 ORTHO05D007468 1.2e-20 104.8 121 47.1
MCO11G792 Micromonas commoda HOM05D006103 ORTHO05D007468 1.4e-19 101.3 343 26.5
SHI06574 Sapria himalayana HOM05D006103 ORTHO05D007468 8.8e-19 98.6 135 40.7
Lj8A284T12 Lonicera japonica HOM05D006103 ORTHO05D007468 2.2e-17 94.0 133 41.4
COL.COLO4_06694 Corchorus olitorius HOM05D006103 ORTHO05D007468 7.0e-16 89.0 55 76.4
RcHm_v2.0_Chr6g0308851 Rosa chinensis HOM05D006103 ORTHO05D007468 7.0e-16 89.0 54 81.5
Lj8C284T4 Lonicera japonica HOM05D006103 ORTHO05D007468 6.6e-14 82.4 55 65.5
CARHR174410 Cardamine hirsuta HOM05D006103 ORTHO05D007468 3.6e-12 76.6 48 75.0
Carub.0008s0069 Capsella rubella HOM05D006103 ORTHO05D007468 8.9e-11 72.0 89 47.2
arahy.Tifrunner.gnm1.ann1.NKK7HF Arachis hypogaea HOM05D006103 ORTHO05D007468 3.4e-10 70.1 86 54.7
Rhsim04G0176300 Rhododendron simsii HOM05D006103 ORTHO05D007468 1.4e-08 64.7 61 57.4
Actinidia25920 Actinidia chinensis HOM05D006103 ORTHO05D007468 2.4e-08 63.9 83 49.4
Cre03.g170100 Chlamydomonas reinhardtii HOM05D006103 ORTHO05D007468 3.2e-08 63.5 152 32.2
Lj8A280T20 Lonicera japonica HOM05D006103 ORTHO05D007468 7.0e-08 62.4 51 60.8


User provided reference genes

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