Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_22017_v3 Cicer arietinum L. HOM05D006150 ORTHO05D007745 1.1e-175 619.8 299 100.0
Medtr4g099290 Medicago truncatula HOM05D006150 ORTHO05D007745 3.6e-158 561.6 297 90.2
TPR.G25747 Trifolium pratense HOM05D006150 ORTHO05D007745 6.8e-157 557.4 297 89.9
Psat4g076080 Pisum sativum HOM05D006150 ORTHO05D007745 4.4e-148 528.1 275 90.5
Lj4g0002003 Lotus japonicus HOM05D006150 ORTHO05D007745 1.0e-144 516.9 296 83.4
Glyma.17G148400 Glycine max HOM05D006150 ORTHO05D007745 6.6e-144 514.2 296 82.1
Glyma.05G066500 Glycine max HOM05D006150 ORTHO05D007745 2.5e-143 512.3 299 80.9
Lalb_Chr09g0329771 Lupinus albus HOM05D006150 ORTHO05D007745 2.1e-142 509.2 300 80.7
VMungo0251G1767 Vigna mungo HOM05D006150 ORTHO05D007745 1.5e-140 503.1 296 78.7
Phvul.003G225600 Phaseolus vulgaris HOM05D006150 ORTHO05D007745 7.5e-140 500.7 295 79.7
arahy.Tifrunner.gnm1.ann1.IPM3U6 Arachis hypogaea HOM05D006150 ORTHO05D007745 1.7e-139 499.6 293 80.5
arahy.Tifrunner.gnm1.ann1.YY6LCE Arachis hypogaea HOM05D006150 ORTHO05D007745 3.5e-137 491.9 293 80.2
COL.COLO4_07285 Corchorus olitorius HOM05D006150 ORTHO05D007745 1.7e-131 473.0 291 75.6
TAR636G1440 Trochodendron aralioides HOM05D006150 ORTHO05D007745 1.4e-130 469.9 295 73.2
Gorai.008G230800 Gossypium raimondii HOM05D006150 ORTHO05D007745 1.0e-128 463.8 296 73.3
Duzib084G0008 Durio zibethinus HOM05D006150 ORTHO05D007745 1.7e-128 463.0 292 74.7
Gohir.A12G212700 Gossypium hirsutum HOM05D006150 ORTHO05D007745 1.7e-128 463.0 296 73.6
Gohir.D12G215200 Gossypium hirsutum HOM05D006150 ORTHO05D007745 8.7e-128 460.7 296 72.6
CSS0019555 Camellia sinensis var. sinensis HOM05D006150 ORTHO05D007745 1.5e-127 459.9 296 72.3
Thecc.03G240100 Theobroma cacao HOM05D006150 ORTHO05D007745 1.9e-127 459.5 296 73.3
MSTRG.6640 Avicennia marina HOM05D006150 ORTHO05D007745 7.3e-127 457.6 296 72.3
Sopen08g026350 Solanum pennellii HOM05D006150 ORTHO05D007745 1.6e-126 456.4 296 71.3
Rhsim07G0136400 Rhododendron simsii HOM05D006150 ORTHO05D007745 2.1e-126 456.1 295 72.9
Solyc08g077840.3 Solanum lycopersicum HOM05D006150 ORTHO05D007745 2.1e-126 456.1 296 70.9
Lj8A277T42 Lonicera japonica HOM05D006150 ORTHO05D007745 2.8e-126 455.7 286 73.4
TWI60G0542 Tripterygium wilfordii HOM05D006150 ORTHO05D007745 2.8e-126 455.7 290 71.4
Hma1.2p1_0570F.1_g180430 Hydrangea macrophylla HOM05D006150 ORTHO05D007745 3.6e-126 455.3 285 73.3
Ciclev10021365m.g Citrus clementina HOM05D006150 ORTHO05D007745 4.7e-126 454.9 295 72.2
EL10Ac5g12270 Beta vulgaris HOM05D006150 ORTHO05D007745 8.1e-126 454.1 294 71.8
AL7G37660 Arabidopsis lyrata HOM05D006150 ORTHO05D007745 2.4e-125 452.6 299 70.9
THA.LOC104807929 Tarenaya hassleriana HOM05D006150 ORTHO05D007745 3.1e-125 452.2 298 70.8
AT4G17050 Arabidopsis thaliana HOM05D006150 ORTHO05D007745 4.0e-125 451.8 299 70.9
CARHR223610 Cardamine hirsuta HOM05D006150 ORTHO05D007745 4.0e-125 451.8 299 70.6
PGSC0003DMG400026243 Solanum tuberosum HOM05D006150 ORTHO05D007745 4.0e-125 451.8 296 70.6
PSO732G0290 Papaver somniferum HOM05D006150 ORTHO05D007745 1.2e-124 450.3 295 71.5
CANSAT21G0710 Cannabis sativa HOM05D006150 ORTHO05D007745 1.5e-124 449.9 299 69.2
BcaNung04656 Brassica carinata HOM05D006150 ORTHO05D007745 2.6e-124 449.1 296 71.3
Cfa012327 Carpinus fangiana HOM05D006150 ORTHO05D007745 2.6e-124 449.1 298 72.5
BraA03t14117Z Brassica rapa HOM05D006150 ORTHO05D007745 3.4e-124 448.7 296 70.9
Cc08_g11330 Coffea canephora HOM05D006150 ORTHO05D007745 4.4e-124 448.4 292 72.3
CAN.G572.11 Capsicum annuum HOM05D006150 ORTHO05D007745 9.9e-124 447.2 299 70.6
PSO675G6476 Papaver somniferum HOM05D006150 ORTHO05D007745 9.9e-124 447.2 287 72.8
Eucgr.D02133 Eucalyptus grandis HOM05D006150 ORTHO05D007745 1.3e-123 446.8 295 72.2
Manes.01G089000 Manihot esculenta HOM05D006150 ORTHO05D007745 1.3e-123 446.8 298 72.5
C07p48520 Brassica napus HOM05D006150 ORTHO05D007745 1.7e-123 446.4 296 70.9
BolC7t45360H Brassica oleracea HOM05D006150 ORTHO05D007745 1.7e-123 446.4 296 70.9
Sp7g17140 Schrenkiella parvula HOM05D006150 ORTHO05D007745 3.8e-123 445.3 300 70.0
A03p50280 Brassica napus HOM05D006150 ORTHO05D007745 4.9e-123 444.9 296 70.6
C07p48460 Brassica napus HOM05D006150 ORTHO05D007745 4.9e-123 444.9 301 71.1
CiPaw.11G072300 Carya illinoinensis HOM05D006150 ORTHO05D007745 4.9e-123 444.9 296 71.3
Carub.0007s2437 Capsella rubella HOM05D006150 ORTHO05D007745 6.4e-123 444.5 300 70.7
Nn6g33757 Nelumbo nucifera HOM05D006150 ORTHO05D007745 8.4e-123 444.1 299 70.6
Potri.003G083600 Populus trichocarpa HOM05D006150 ORTHO05D007745 8.4e-123 444.1 306 70.6
SalBow7G3619 Salvia bowleyana HOM05D006150 ORTHO05D007745 1.1e-122 443.7 283 73.5
ECA234G2169 Erigeron canadensis HOM05D006150 ORTHO05D007745 1.4e-122 443.4 280 72.9
HanXRQChr17g0534011 Helianthus annuus HOM05D006150 ORTHO05D007745 1.9e-122 443.0 297 71.4
CsaV3_3G004750 Cucumis sativus L. HOM05D006150 ORTHO05D007745 5.4e-122 441.4 295 68.5
BcaC06g33538 Brassica carinata HOM05D006150 ORTHO05D007745 9.3e-122 440.7 297 70.0
BolC1t02493H Brassica oleracea HOM05D006150 ORTHO05D007745 9.3e-122 440.7 300 70.7
MBI04_g13858_MAGBIO Magnolia biondii HOM05D006150 ORTHO05D007745 9.3e-122 440.7 295 69.2
BraA01t01953Z Brassica rapa HOM05D006150 ORTHO05D007745 2.7e-121 439.1 302 69.9
Atru.chr9.1206 Acer truncatum HOM05D006150 ORTHO05D007745 3.5e-121 438.7 295 69.8
MD04G1055500 Malus domestica HOM05D006150 ORTHO05D007745 3.5e-121 438.7 299 68.6
ClCG10G005070 Citrullus lanatus HOM05D006150 ORTHO05D007745 6.0e-121 438.0 296 67.2
RcHm_v2.0_Chr7g0205681 Rosa chinensis HOM05D006150 ORTHO05D007745 7.8e-121 437.6 296 70.6
C07p48390 Brassica napus HOM05D006150 ORTHO05D007745 1.7e-120 436.4 294 70.7
Haze_08363 Corylus avellana HOM05D006150 ORTHO05D007745 6.6e-120 434.5 323 66.3
Ah.12g053980 Amaranthus hybridus HOM05D006150 ORTHO05D007745 8.7e-120 434.1 297 66.7
BcaNung00130 Brassica carinata HOM05D006150 ORTHO05D007745 1.1e-119 433.7 300 69.7
FAN04G1813 Fragaria x ananassa HOM05D006150 ORTHO05D007745 1.1e-119 433.7 294 70.4
FvH4_5g20400 Fragaria vesca HOM05D006150 ORTHO05D007745 2.5e-119 432.6 290 71.0
DCAR_008330 Daucus carota HOM05D006150 ORTHO05D007745 5.6e-119 431.4 296 69.3
PGR031G0533 Punica granatum HOM05D006150 ORTHO05D007745 1.3e-118 430.3 260 76.5
FAN08G0760 Fragaria x ananassa HOM05D006150 ORTHO05D007745 1.6e-118 429.9 289 70.6
Sed0022790 Sechium edule HOM05D006150 ORTHO05D007745 2.1e-118 429.5 295 67.1
PSO732G0039 Papaver somniferum HOM05D006150 ORTHO05D007745 6.9e-117 424.5 297 67.3
unitig_746.g26644 Utricularia gibba HOM05D006150 ORTHO05D007745 4.5e-116 421.8 294 67.3
Aqoxy5G02622 Aquilegia oxysepala HOM05D006150 ORTHO05D007745 2.9e-115 419.1 316 64.6
CDE12G0966 Ceratophyllum demersum HOM05D006150 ORTHO05D007745 4.2e-114 415.2 294 65.3
A01p20260 Brassica napus HOM05D006150 ORTHO05D007745 7.1e-114 414.5 289 69.2
Os07g0495000 Oryza sativa ssp. japonica HOM05D006150 ORTHO05D007745 7.1e-114 414.5 280 70.0
Nitab4.5_0000500g0240 Nicotiana tabacum HOM05D006150 ORTHO05D007745 2.1e-113 412.9 298 67.1
Peaxi162Scf00301g00519 Petunia axillaris HOM05D006150 ORTHO05D007745 2.7e-113 412.5 289 67.5
ATR0665G013 Amborella trichopoda HOM05D006150 ORTHO05D007745 6.0e-113 411.4 296 66.6
Nitab4.5_0009451g0030 Nicotiana tabacum HOM05D006150 ORTHO05D007745 5.1e-112 408.3 302 65.6
Zm00001eb322060 Zea mays HOM05D006150 ORTHO05D007745 6.7e-112 407.9 282 67.7
QL12p008732 Quercus lobata HOM05D006150 ORTHO05D007745 7.4e-111 404.4 406 53.2
HPP92_025744 Vanilla planifolia HOM05D006150 ORTHO05D007745 1.3e-110 403.7 279 67.7
Thhalv10026866m.g Eutrema salsugineum HOM05D006150 ORTHO05D007745 6.9e-109 397.9 311 64.3
vmacro00832 Vaccinium macrocarpon HOM05D006150 ORTHO05D007745 1.2e-108 397.1 296 65.9
Actinidia02195 Actinidia chinensis HOM05D006150 ORTHO05D007745 7.1e-106 387.9 261 69.7
Aa31LG2G13130 Aethionema arabicum HOM05D006150 ORTHO05D007745 7.1e-106 387.9 323 59.8
Dinv28876 Davidia involucrata HOM05D006150 ORTHO05D007745 3.3e-103 379.0 266 68.8
SEGI_33649 Sequoiadendron giganteum HOM05D006150 ORTHO05D007745 3.3e-103 379.0 295 63.4
BcaC09g50439 Brassica carinata HOM05D006150 ORTHO05D007745 2.8e-102 375.9 301 62.8
C01p25410 Brassica napus HOM05D006150 ORTHO05D007745 2.8e-102 375.9 301 62.8
Sc01g0007980 Simmondsia chinensis HOM05D006150 ORTHO05D007745 2.0e-100 369.8 247 68.4
Oeu012348.1 Olea europaea HOM05D006150 ORTHO05D007745 3.7e-94 349.0 211 78.2
Prupe.5G055300 Prunus persica HOM05D006150 ORTHO05D007745 1.4e-93 347.1 212 76.4
Pp3c9_12580 Physcomitrium patens HOM05D006150 ORTHO05D007745 5.3e-93 345.1 294 57.5
Mapoly0072s0097 Marchantia polymorpha HOM05D006150 ORTHO05D007745 2.6e-92 342.8 258 60.1
SGA_v2.0_scaffold181G39680 Striga asiatica HOM05D006150 ORTHO05D007745 4.5e-92 342.0 242 71.1
AagrBONN_evm.TU.Sc2ySwM_228.2274 Anthoceros agrestis HOM05D006150 ORTHO05D007745 1.3e-91 340.5 255 63.5
AUR62007167 Chenopodium quinoa HOM05D006150 ORTHO05D007745 4.6e-89 332.0 202 77.2
AUR62018839 Chenopodium quinoa HOM05D006150 ORTHO05D007745 4.6e-89 332.0 202 76.2
Lsat_1_v5_gn_3_15361 Lactuca sativa HOM05D006150 ORTHO05D007745 8.8e-88 327.8 250 64.8
GSVIVG01003685001 Vitis vinifera HOM05D006150 ORTHO05D007745 7.4e-87 324.7 282 59.2
Cre06.g290000 Chlamydomonas reinhardtii HOM05D006150 ORTHO05D007745 2.4e-69 266.5 248 54.8
Actinidia25909 Actinidia chinensis HOM05D006150 ORTHO05D007745 1.7e-67 260.4 295 48.5
MCO07G379 Micromonas commoda HOM05D006150 ORTHO05D007745 8.5e-67 258.1 265 50.2
Potri.001G150800 Populus trichocarpa HOM05D006150 ORTHO05D007745 1.7e-59 233.8 195 59.0
MCO04G282 Micromonas commoda HOM05D006150 ORTHO05D007745 4.4e-55 219.2 262 46.6
MD06G1047100 Malus domestica HOM05D006150 ORTHO05D007745 1.3e-54 217.6 263 47.5
MELO3C014174.2 Cucumis melo HOM05D006150 ORTHO05D007745 1.2e-47 194.5 288 41.3
Hma1.2p1_0570F.1_g180440 Hydrangea macrophylla HOM05D006150 ORTHO05D007745 1.5e-47 194.1 128 68.0
Sabra01G0120800 Salix brachista HOM05D006150 ORTHO05D007745 4.9e-46 189.1 175 56.0
FAN18G0603 Fragaria x ananassa HOM05D006150 ORTHO05D007745 2.3e-43 180.3 142 61.3
CSS0048254 Camellia sinensis var. sinensis HOM05D006150 ORTHO05D007745 4.4e-39 166.0 97 81.4
Sabra01G0120600 Salix brachista HOM05D006150 ORTHO05D007745 2.3e-35 153.7 162 54.3
PSO717G0125 Papaver somniferum HOM05D006150 ORTHO05D007745 3.7e-30 136.3 98 61.2
Cpa.g.sc98.38 Carica papaya HOM05D006150 ORTHO05D007745 6.4e-30 135.6 81 74.1
BcaC01g03436 Brassica carinata HOM05D006150 ORTHO05D007745 4.6e-28 129.4 103 57.3
CBR_g38093 Chara braunii HOM05D006150 ORTHO05D007745 1.3e-27 127.9 66 81.8
GSVIVG01021810001 Vitis vinifera HOM05D006150 ORTHO05D007745 4.4e-15 86.3 70 57.1
Cpa.g.sc98.35 Carica papaya HOM05D006150 ORTHO05D007745 2.3e-11 73.9 56 62.5
Oeu040463.1 Olea europaea HOM05D001574 ORTHO05D000708 2.8e-09 67.0 58 55.2
Lsat_1_v5_gn_2_23540 Lactuca sativa HOM05D002379 ORTHO05D003469 3.4e-07 60.1 48 54.2
Lsat_1_v5_gn_8_14120 Lactuca sativa HOM05D002379 ORTHO05D021531 3.4e-07 60.1 48 54.2
Lsat_1_v5_gn_9_81181 Lactuca sativa HOM05D002379 ORTHO05D003469 3.4e-07 60.1 48 54.2
Lsat_1_v5_gn_6_74120 Lactuca sativa HOM05D006150 ORTHO05D233887 5.8e-07 59.3 33 78.8


User provided reference genes

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