Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_21966_v3 Cicer arietinum L. HOM05D004155 ORTHO05D004837 1.1e-136 490.0 248 100.0
Medtr4g100930 Medicago truncatula HOM05D004155 ORTHO05D004837 1.3e-116 423.3 250 88.0
TPR.G11991 Trifolium pratense HOM05D004155 ORTHO05D004837 1.6e-111 406.4 250 85.6
Glyma.17G141800 Glycine max HOM05D004155 ORTHO05D004837 3.5e-106 388.7 248 81.0
Glyma.05G059400 Glycine max HOM05D004155 ORTHO05D004837 6.5e-105 384.4 248 81.5
VMungo0251G3701 Vigna mungo HOM05D004155 ORTHO05D004837 1.9e-104 382.9 248 81.0
Haze_07913 Corylus avellana HOM05D004155 ORTHO05D004837 3.2e-104 382.1 249 78.7
Phvul.003G220600 Phaseolus vulgaris HOM05D004155 ORTHO05D004837 3.2e-104 382.1 248 81.0
Psat4g072240 Pisum sativum HOM05D004155 ORTHO05D004837 3.2e-104 382.1 250 81.6
Cfa012719 Carpinus fangiana HOM05D004155 ORTHO05D004837 1.2e-103 380.2 249 78.3
CiPaw.12G052800 Carya illinoinensis HOM05D004155 ORTHO05D004837 5.2e-102 374.8 249 78.3
Duzib136G0003 Durio zibethinus HOM05D004155 ORTHO05D004837 5.7e-101 371.3 251 76.5
Lalb_Chr09g0330111 Lupinus albus HOM05D004155 ORTHO05D004837 5.7e-101 371.3 251 80.1
MELO3C013940.2 Cucumis melo HOM05D004155 ORTHO05D004837 7.5e-101 370.9 249 78.7
MD06G1058700 Malus domestica HOM05D004155 ORTHO05D004837 1.3e-100 370.2 250 78.4
Prupe.5G069700 Prunus persica HOM05D004155 ORTHO05D004837 3.7e-100 368.6 249 77.9
Duzib068G1244 Durio zibethinus HOM05D004155 ORTHO05D004837 8.3e-100 367.5 250 76.0
Atru.chr9.1312 Acer truncatum HOM05D004155 ORTHO05D004837 1.1e-99 367.1 250 76.4
Gohir.A08G170500 Gossypium hirsutum HOM05D004155 ORTHO05D004837 1.4e-99 366.7 251 76.9
Actinidia22301 Actinidia chinensis HOM05D004155 ORTHO05D004837 3.1e-99 365.5 248 77.8
QL12p012142 Quercus lobata HOM05D004155 ORTHO05D004837 3.1e-99 365.5 248 77.8
Thecc.03G251400 Theobroma cacao HOM05D004155 ORTHO05D004837 3.1e-99 365.5 250 76.4
Gohir.D08G188700 Gossypium hirsutum HOM05D004155 ORTHO05D004837 5.4e-99 364.8 251 76.1
ClCG10G002690 Citrullus lanatus HOM05D004155 ORTHO05D004837 7.0e-99 364.4 247 77.3
Lj4g0023659 Lotus japonicus HOM05D004155 ORTHO05D004837 9.1e-99 364.0 250 78.4
Gorai.004G198700 Gossypium raimondii HOM05D004155 ORTHO05D004837 1.6e-98 363.2 251 75.7
Lalb_Chr16g0386681 Lupinus albus HOM05D004155 ORTHO05D004837 2.0e-98 362.8 254 76.4
GSVIVG01001328001 Vitis vinifera HOM05D004155 ORTHO05D004837 5.9e-98 361.3 248 76.2
Ciclev10021960m.g Citrus clementina HOM05D004155 ORTHO05D004837 7.7e-98 360.9 250 76.0
Nn6g33959 Nelumbo nucifera HOM05D004155 ORTHO05D004837 1.0e-97 360.5 247 76.5
Cc08_g12420 Coffea canephora HOM05D004155 ORTHO05D004837 1.3e-97 360.1 248 74.6
Eucgr.I02746 Eucalyptus grandis HOM05D004155 ORTHO05D004837 2.9e-97 359.0 249 75.1
Sed0004864 Sechium edule HOM05D004155 ORTHO05D004837 2.9e-97 359.0 250 76.0
Aqoxy5G03883 Aquilegia oxysepala HOM05D004155 ORTHO05D004837 3.8e-97 358.6 252 73.0
TAR374G0168 Trochodendron aralioides HOM05D004155 ORTHO05D004837 3.8e-97 358.6 248 76.2
CSS0005110 Camellia sinensis var. sinensis HOM05D004155 ORTHO05D004837 5.0e-97 358.2 251 77.3
CSS0021878 Camellia sinensis var. sinensis HOM05D004155 ORTHO05D004837 5.0e-97 358.2 251 77.3
TAR374G0401 Trochodendron aralioides HOM05D004155 ORTHO05D004837 6.6e-97 357.8 248 76.2
CsaV3_3G002720 Cucumis sativus L. HOM05D004155 ORTHO05D004837 1.1e-96 357.1 249 76.3
PGSC0003DMG400011880 Solanum tuberosum HOM05D004155 ORTHO05D004837 1.1e-96 357.1 248 75.0
DCAR_006831 Daucus carota HOM05D004155 ORTHO05D004837 5.5e-96 354.8 250 74.4
Gorai.008G235200 Gossypium raimondii HOM05D004155 ORTHO05D004837 1.2e-95 353.6 250 72.8
arahy.Tifrunner.gnm1.ann1.FN76PE Arachis hypogaea HOM05D004155 ORTHO05D004837 1.6e-95 353.2 255 76.5
COL.COLO4_37174 Corchorus olitorius HOM05D004155 ORTHO05D004837 1.6e-95 353.2 267 70.8
Hma1.2p1_0316F.1_g123160 Hydrangea macrophylla HOM05D004155 ORTHO05D004837 2.1e-95 352.8 250 76.0
Potri.003G077000 Populus trichocarpa HOM05D004155 ORTHO05D004837 2.1e-95 352.8 255 73.7
Gohir.D12G219500 Gossypium hirsutum HOM05D004155 ORTHO05D004837 3.6e-95 352.1 250 72.4
Sopen06g020840 Solanum pennellii HOM05D004155 ORTHO05D004837 4.7e-95 351.7 248 74.2
Solyc06g060720.3 Solanum lycopersicum HOM05D004155 ORTHO05D004837 1.0e-94 350.5 248 73.8
Duzib084G0799 Durio zibethinus HOM05D004155 ORTHO05D004837 2.3e-94 349.4 250 74.0
Lj2A217G31 Lonicera japonica HOM05D004155 ORTHO05D004837 2.3e-94 349.4 248 73.8
FAN08G3385 Fragaria x ananassa HOM05D004155 ORTHO05D004837 3.0e-94 349.0 250 74.8
arahy.Tifrunner.gnm1.ann1.9Q5ZL0 Arachis hypogaea HOM05D004155 ORTHO05D004837 6.8e-94 347.8 239 79.1
Gohir.A12G217000 Gossypium hirsutum HOM05D004155 ORTHO05D004837 1.2e-93 347.1 250 72.0
FAN04G2128 Fragaria x ananassa HOM05D004155 ORTHO05D004837 2.0e-93 346.3 250 74.4
FvH4_5g18890 Fragaria vesca HOM05D004155 ORTHO05D004837 2.6e-93 345.9 250 74.0
FAN18G2873 Fragaria x ananassa HOM05D004155 ORTHO05D004837 2.6e-93 345.9 250 74.0
FAN18G3217 Fragaria x ananassa HOM05D004155 ORTHO05D004837 2.6e-93 345.9 250 74.0
FAN18G4261 Fragaria x ananassa HOM05D004155 ORTHO05D004837 2.6e-93 345.9 250 74.0
Manes.01G080600 Manihot esculenta HOM05D004155 ORTHO05D004837 2.6e-93 345.9 254 73.6
PGR142G3296 Punica granatum HOM05D004155 ORTHO05D004837 2.6e-93 345.9 246 72.4
Potri.001G157900 Populus trichocarpa HOM05D004155 ORTHO05D004837 9.8e-93 344.0 257 71.2
TWI81G0233 Tripterygium wilfordii HOM05D004155 ORTHO05D004837 9.8e-93 344.0 250 73.6
Manes.02G039600 Manihot esculenta HOM05D004155 ORTHO05D004837 1.3e-92 343.6 253 71.5
RcHm_v2.0_Chr7g0203271 Rosa chinensis HOM05D004155 ORTHO05D004837 2.2e-92 342.8 250 73.2
FAN13G1725 Fragaria x ananassa HOM05D004155 ORTHO05D004837 2.8e-92 342.4 249 73.1
EL10Ac9g21736 Beta vulgaris HOM05D004155 ORTHO05D004837 3.7e-92 342.0 251 71.3
CANSAT21G0249 Cannabis sativa HOM05D004155 ORTHO05D004837 8.3e-92 340.9 248 73.0
Oeu026407.1 Olea europaea HOM05D004155 ORTHO05D004837 8.3e-92 340.9 260 70.4
Sc01g0008440 Simmondsia chinensis HOM05D004155 ORTHO05D004837 8.3e-92 340.9 252 71.8
TWI60G0516 Tripterygium wilfordii HOM05D004155 ORTHO05D004837 1.4e-91 340.1 250 73.2
DCAR_008491 Daucus carota HOM05D004155 ORTHO05D004837 2.7e-90 335.9 250 69.6
Nitab4.5_0005960g0040 Nicotiana tabacum HOM05D004155 ORTHO05D004837 7.8e-90 334.3 248 72.2
CAN.G1058.24 Capsicum annuum HOM05D004155 ORTHO05D004837 1.3e-89 333.6 248 70.2
CAN.G62.43 Capsicum annuum HOM05D004155 ORTHO05D004837 1.7e-89 333.2 248 70.2
SalBow5G4949 Salvia bowleyana HOM05D004155 ORTHO05D004837 5.0e-89 331.6 237 74.7
Oeu040215.1 Olea europaea HOM05D004155 ORTHO05D004837 6.6e-89 331.3 246 72.8
Carub.0006s1579 Capsella rubella HOM05D004155 ORTHO05D004837 1.5e-88 330.1 245 67.8
PGSC0003DMG400004812 Solanum tuberosum HOM05D004155 ORTHO05D004837 1.5e-88 330.1 248 70.6
BcaB08g36763 Brassica carinata HOM05D004155 ORTHO05D004837 1.9e-88 329.7 245 67.8
Thhalv10014511m.g Eutrema salsugineum HOM05D004155 ORTHO05D004837 1.9e-88 329.7 250 67.2
A10p21850 Brassica napus HOM05D004155 ORTHO05D004837 2.1e-87 326.2 250 67.2
C09p59610 Brassica napus HOM05D004155 ORTHO05D004837 2.8e-87 325.9 250 67.2
HanXRQChr03g0088551 Helianthus annuus HOM05D004155 ORTHO05D004837 4.7e-87 325.1 236 72.0
BcaC04g18780 Brassica carinata HOM05D004155 ORTHO05D004837 8.0e-87 324.3 250 66.8
SGA_v2.0_scaffold146G36157 Striga asiatica HOM05D004155 ORTHO05D004837 8.0e-87 324.3 256 69.5
Aa31LG11G12130 Aethionema arabicum HOM05D004155 ORTHO05D004837 1.0e-86 323.9 245 67.3
MSTRG.25524 Avicennia marina HOM05D004155 ORTHO05D004837 1.4e-86 323.6 258 69.0
Dinv21638 Davidia involucrata HOM05D004155 ORTHO05D004837 1.4e-86 323.6 219 74.9
BraA10t44245Z Brassica rapa HOM05D004155 ORTHO05D004837 1.8e-86 323.2 251 66.9
BolC9t58800H Brassica oleracea HOM05D004155 ORTHO05D004837 2.3e-86 322.8 256 66.0
Sp3g02480 Schrenkiella parvula HOM05D004155 ORTHO05D004837 2.3e-86 322.8 248 68.5
CARHR195630 Cardamine hirsuta HOM05D004155 ORTHO05D004837 4.0e-86 322.0 245 67.3
AT5G17550 Arabidopsis thaliana HOM05D004155 ORTHO05D004837 5.2e-86 321.6 245 66.1
THA.LOC104802903 Tarenaya hassleriana HOM05D004155 ORTHO05D004837 5.2e-86 321.6 245 68.2
Ah.11g040940 Amaranthus hybridus HOM05D004155 ORTHO05D004837 6.8e-86 321.2 237 71.3
Ah.11g040960 Amaranthus hybridus HOM05D004155 ORTHO05D004837 6.8e-86 321.2 237 71.3
AL6G28640 Arabidopsis lyrata HOM05D004155 ORTHO05D004837 6.8e-86 321.2 245 66.1
Lsat_1_v5_gn_6_91040 Lactuca sativa HOM05D004155 ORTHO05D004837 6.8e-86 321.2 244 68.9
Sp6g26670 Schrenkiella parvula HOM05D004155 ORTHO05D004837 1.5e-85 320.1 246 67.1
MSTRG.12099 Avicennia marina HOM05D004155 ORTHO05D004837 3.4e-85 318.9 256 68.8
SGA_v2.0_scaffold120G32880 Striga asiatica HOM05D004155 ORTHO05D004837 3.4e-85 318.9 241 70.5
PSO782G0374 Papaver somniferum HOM05D004155 ORTHO05D004837 4.4e-85 318.5 259 68.0
TAR375G0135 Trochodendron aralioides HOM05D004155 ORTHO05D004837 4.4e-85 318.5 233 73.0
Sabra03G0047400 Salix brachista HOM05D004155 ORTHO05D004837 2.2e-84 316.2 318 58.5
PSO063G2044 Papaver somniferum HOM05D004155 ORTHO05D004837 6.4e-84 314.7 259 67.2
CARHR077510 Cardamine hirsuta HOM05D004155 ORTHO05D004837 1.4e-83 313.5 249 66.7
MBI04_g09499_MAGBIO Magnolia biondii HOM05D004155 ORTHO05D004837 1.4e-83 313.5 266 67.3
Carub.0003s0263 Capsella rubella HOM05D004155 ORTHO05D004837 2.4e-83 312.8 246 67.9
BraA03t12501Z Brassica rapa HOM05D004155 ORTHO05D004837 4.1e-83 312.0 248 67.3
Migut.A00944 Erythranthe guttata HOM05D004155 ORTHO05D004837 9.2e-83 310.8 239 70.7
AT3G03490 Arabidopsis thaliana HOM05D004155 ORTHO05D004837 2.0e-82 309.7 249 65.9
THA.LOC104820827 Tarenaya hassleriana HOM05D004155 ORTHO05D004837 2.0e-82 309.7 243 67.5
ECA240G3289 Erigeron canadensis HOM05D004155 ORTHO05D004837 4.6e-82 308.5 250 66.8
AL3G13170 Arabidopsis lyrata HOM05D004155 ORTHO05D004837 6.0e-82 308.1 247 66.0
Sabra01G0133600 Salix brachista HOM05D004155 ORTHO05D004837 1.3e-81 307.0 323 55.4
Aa31LG5G14010 Aethionema arabicum HOM05D004155 ORTHO05D004837 3.0e-81 305.8 248 65.3
Nitab4.5_0000312g0050 Nicotiana tabacum HOM05D004155 ORTHO05D004837 1.1e-80 303.9 214 72.9
BcaB04g19367 Brassica carinata HOM05D004155 ORTHO05D004837 1.9e-80 303.1 252 65.1
Nitab4.5_0000618g0060 Nicotiana tabacum HOM05D004155 ORTHO05D004837 1.9e-80 303.1 217 72.4
Peaxi162Scf00174g00143 Petunia axillaris HOM05D004155 ORTHO05D004837 4.3e-80 302.0 230 70.4
BcaC01g04400 Brassica carinata HOM05D004155 ORTHO05D004837 7.3e-80 301.2 246 65.0
C03p40540 Brassica napus HOM05D004155 ORTHO05D004837 7.3e-80 301.2 246 65.0
BolC3t16319H Brassica oleracea HOM05D004155 ORTHO05D004837 7.3e-80 301.2 246 65.0
Nitab4.5_0001076g0090 Nicotiana tabacum HOM05D004155 ORTHO05D004837 7.3e-80 301.2 205 73.7
Ah.11g040910 Amaranthus hybridus HOM05D004155 ORTHO05D004837 2.1e-79 299.7 234 68.4
A03p33290 Brassica napus HOM05D004155 ORTHO05D004837 1.1e-78 297.4 246 64.2
HanXRQChr06g0164361 Helianthus annuus HOM05D004155 ORTHO05D004837 4.0e-78 295.4 246 65.4
unitig_37.g12342 Utricularia gibba HOM05D004155 ORTHO05D004837 2.6e-77 292.7 251 62.9
AUR62016725 Chenopodium quinoa HOM05D004155 ORTHO05D004837 1.4e-75 287.0 251 62.2
CDE11G1226 Ceratophyllum demersum HOM05D004155 ORTHO05D004837 6.0e-74 281.6 251 60.2
HPP92_007424 Vanilla planifolia HOM05D004155 ORTHO05D004837 5.6e-72 275.0 258 58.9
Rhsim02G0215900 Rhododendron simsii HOM05D004155 ORTHO05D004837 8.1e-71 271.2 390 46.2
Ah.11g040970 Amaranthus hybridus HOM05D004155 ORTHO05D004837 5.2e-70 268.5 235 61.3
CDE09G1113 Ceratophyllum demersum HOM05D004155 ORTHO05D004837 5.8e-69 265.0 252 59.5
Phvul.003G220550 Phaseolus vulgaris HOM05D004155 ORTHO05D004837 9.2e-67 257.7 144 86.8
ATR0317G023 Amborella trichopoda HOM05D004155 ORTHO05D004837 1.0e-65 254.2 237 61.6
Nn1g00995 Nelumbo nucifera HOM05D004155 ORTHO05D004837 1.1e-64 250.8 234 61.1
Actinidia13193 Actinidia chinensis HOM05D004155 ORTHO05D004837 2.8e-63 246.1 150 81.3
Os02g0661000 Oryza sativa ssp. japonica HOM05D004155 ORTHO05D004837 1.7e-60 236.9 254 53.1
vmacro11263 Vaccinium macrocarpon HOM05D004155 ORTHO05D004837 3.8e-60 235.7 136 83.8
Zm00001eb249680 Zea mays HOM05D004155 ORTHO05D004837 1.4e-59 233.8 248 52.4
Gorai.003G171500 Gossypium raimondii HOM05D004155 ORTHO05D004837 3.6e-55 219.2 216 57.9
Gohir.A03G008100 Gossypium hirsutum HOM05D004155 ORTHO05D004837 4.7e-55 218.8 170 66.5
Gohir.D03G162900 Gossypium hirsutum HOM05D004155 ORTHO05D004837 1.1e-54 217.6 170 67.6
Zm00001eb186660 Zea mays HOM05D004155 ORTHO05D004837 6.9e-54 214.9 248 51.6
Pp3c2_16800 Physcomitrium patens HOM05D004155 ORTHO05D004837 4.2e-51 205.7 248 50.0
TPR.G37592 Trifolium pratense HOM05D004155 ORTHO05D004837 1.5e-48 197.2 117 87.2
Cpa.g.sc43.156 Carica papaya HOM05D004155 ORTHO05D004837 2.5e-48 196.4 113 83.2
Ah.11g040930 Amaranthus hybridus HOM05D004155 ORTHO05D004837 1.8e-46 190.3 194 57.2
Mapoly0045s0092 Marchantia polymorpha HOM05D004155 ORTHO05D004837 3.4e-45 186.0 289 42.6
TPR.G37609 Trifolium pratense HOM05D004155 ORTHO05D004837 2.4e-38 163.3 103 84.5
Cpa.g.sc43.157 Carica papaya HOM05D004155 ORTHO05D004837 1.6e-34 150.6 132 65.9
CBR_g22421 Chara braunii HOM05D004155 ORTHO05D004837 3.9e-33 146.0 281 36.7
Actinidia14427 Actinidia chinensis HOM05D004155 ORTHO05D004837 5.6e-32 142.1 129 62.0
AagrBONN_evm.TU.Sc2ySwM_228.1233 Anthoceros agrestis HOM05D004155 ORTHO05D004837 5.6e-32 142.1 263 36.9
SMO146G0254 Selaginella moellendorffii HOM05D004155 ORTHO05D004837 1.2e-26 124.4 95 65.3
SMO340G0179 Selaginella moellendorffii HOM05D004155 ORTHO05D004837 8.7e-25 118.2 91 59.3
CAN.G1058.18 Capsicum annuum HOM05D002401 ORTHO05D007109 4.3e-24 115.9 69 81.2
Thhalv10015034m.g Eutrema salsugineum HOM05D004155 ORTHO05D004837 1.1e-22 111.3 111 57.7
arahy.Tifrunner.gnm1.ann1.Z2VGSW Arachis hypogaea HOM05D004155 ORTHO05D004837 6.9e-22 108.6 77 74.0
arahy.Tifrunner.gnm1.ann1.BEL5CJ Arachis hypogaea HOM05D004155 ORTHO05D004837 5.9e-21 105.5 77 71.4
Cre02.g119000 Chlamydomonas reinhardtii HOM05D004155 ORTHO05D004837 1.4e-17 94.4 128 41.4
PSO384G2334 Papaver somniferum HOM05D004155 ORTHO05D004837 1.5e-16 90.9 121 51.2
PRCOL_00005614 Prasinoderma coloniale HOM05D004155 ORTHO05D004837 9.7e-16 88.2 96 41.7
ECA247G1153 Erigeron canadensis HOM05D004155 ORTHO05D004837 2.2e-12 77.0 93 55.9
PGSC0003DMG400045666 Solanum tuberosum HOM05D004155 ORTHO05D004837 5.0e-12 75.9 80 51.2
Pp3c1_22650 Physcomitrium patens HOM05D004155 ORTHO05D004837 3.2e-11 73.2 81 50.6
SEGI_17945 Sequoiadendron giganteum HOM05D004155 ORTHO05D004837 7.2e-11 72.0 134 40.3
Cfa022446 Carpinus fangiana HOM05D004155 ORTHO05D126510 8.8e-09 65.1 106 38.7


User provided reference genes

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