Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_21929_v3 Cicer arietinum L. HOM05D004758 ORTHO05D006063 1.6e-39 165.6 82 100.0
Ca_21920_v3 Cicer arietinum L. HOM05D004758 ORTHO05D006063 5.8e-26 120.6 57 100.0
arahy.Tifrunner.gnm1.ann1.MVA0XP Arachis hypogaea HOM05D004758 ORTHO05D006063 2.2e-25 118.6 58 93.1
Medtr4g105700 Medicago truncatula HOM05D004758 ORTHO05D006063 3.8e-25 117.9 57 98.2
TPR.G37444 Trifolium pratense HOM05D004758 ORTHO05D006063 3.8e-25 117.9 57 98.2
Lalb_Chr13g0297791 Lupinus albus HOM05D004758 ORTHO05D006063 4.9e-25 117.5 58 93.1
Lj4g0021664 Lotus japonicus HOM05D004758 ORTHO05D006063 8.4e-25 116.7 57 94.7
Lalb_Chr12g0201611 Lupinus albus HOM05D004758 ORTHO05D006063 1.4e-24 115.9 58 93.1
Glyma.05G038000 Glycine max HOM05D004758 ORTHO05D006063 2.4e-24 115.2 57 93.0
Glyma.17G089100 Glycine max HOM05D004758 ORTHO05D006063 2.4e-24 115.2 57 93.0
VMungo1215G2684 Vigna mungo HOM05D004758 ORTHO05D006063 5.4e-24 114.0 57 89.5
Phvul.003G200800 Phaseolus vulgaris HOM05D004758 ORTHO05D006063 7.1e-24 113.6 57 89.5
Psat4g058120 Pisum sativum HOM05D004758 ORTHO05D006063 1.8e-22 109.0 57 91.2
arahy.Tifrunner.gnm1.ann1.64XA74 Arachis hypogaea HOM05D004758 ORTHO05D006063 9.3e-16 86.7 43 88.4
THA.LOC104827198 Tarenaya hassleriana HOM05D004758 ORTHO05D006063 7.9e-15 83.6 51 78.4
COL.COLO4_37813 Corchorus olitorius HOM05D004758 ORTHO05D006063 8.7e-14 80.1 57 66.7
CSS0042937 Camellia sinensis var. sinensis HOM05D004758 ORTHO05D006063 1.5e-13 79.3 57 73.7
Sp6g27370 Schrenkiella parvula HOM05D004758 ORTHO05D006063 4.3e-13 77.8 58 70.7
Thecc.05G217400 Theobroma cacao HOM05D004758 ORTHO05D006063 4.3e-13 77.8 57 71.9
Manes.09G127900 Manihot esculenta HOM05D004758 ORTHO05D006063 7.4e-13 77.0 57 70.2
A10p22470 Brassica napus HOM05D004758 ORTHO05D006063 9.6e-13 76.6 58 69.0
BolC9t58865H Brassica oleracea HOM05D004758 ORTHO05D006063 9.6e-13 76.6 58 69.0
BraA10t44306Z Brassica rapa HOM05D004758 ORTHO05D006063 9.6e-13 76.6 58 69.0
vmacro06528 Vaccinium macrocarpon HOM05D004758 ORTHO05D006063 1.3e-12 76.3 51 72.5
Cpa.g.sc43.121 Carica papaya HOM05D004758 ORTHO05D006063 1.6e-12 75.9 59 66.1
Aa31LG11G12810 Aethionema arabicum HOM05D004758 ORTHO05D006063 2.1e-12 75.5 58 72.4
Aa31LG11G12880 Aethionema arabicum HOM05D004758 ORTHO05D006063 2.1e-12 75.5 58 70.7
Actinidia08754 Actinidia chinensis HOM05D004758 ORTHO05D006063 2.8e-12 75.1 57 68.4
AL6G27760 Arabidopsis lyrata HOM05D004758 ORTHO05D006063 2.8e-12 75.1 58 67.2
CARHR196430 Cardamine hirsuta HOM05D004758 ORTHO05D006063 2.8e-12 75.1 58 67.2
ECA236G2519 Erigeron canadensis HOM05D004758 ORTHO05D006063 8.2e-12 73.6 59 61.0
TAR375G0794 Trochodendron aralioides HOM05D004758 ORTHO05D006063 8.2e-12 73.6 57 66.7
Thhalv10012644m.g Eutrema salsugineum HOM05D004758 ORTHO05D006063 1.4e-11 72.8 58 67.2
Gorai.013G183600 Gossypium raimondii HOM05D004758 ORTHO05D006063 1.4e-11 72.8 57 66.7
Sabra13G0073200 Salix brachista HOM05D004758 ORTHO05D006063 1.4e-11 72.8 57 68.4
Carub.0006s1497 Capsella rubella HOM05D004758 ORTHO05D006063 1.8e-11 72.4 58 63.8
BcaC04g18853 Brassica carinata HOM05D004758 ORTHO05D006063 3.1e-11 71.6 58 67.2
C09p60320 Brassica napus HOM05D004758 ORTHO05D006063 3.1e-11 71.6 58 67.2
Gohir.A13G156800 Gossypium hirsutum HOM05D004758 ORTHO05D006063 3.1e-11 71.6 57 64.9
Gohir.D13G161600 Gossypium hirsutum HOM05D004758 ORTHO05D006063 4.0e-11 71.2 57 66.7
DCAR_014578 Daucus carota HOM05D004758 ORTHO05D006063 5.3e-11 70.9 57 61.4
A02p03760 Brassica napus HOM05D004758 ORTHO05D006063 9.0e-11 70.1 58 65.5
BolC2t06772H Brassica oleracea HOM05D004758 ORTHO05D006063 9.0e-11 70.1 58 65.5
BraA02t05341Z Brassica rapa HOM05D004758 ORTHO05D006063 9.0e-11 70.1 58 65.5
ClCG09G017100 Citrullus lanatus HOM05D004758 ORTHO05D006063 1.5e-10 69.3 57 66.7
AT5G16750 Arabidopsis thaliana HOM05D004758 ORTHO05D006063 2.0e-10 68.9 58 63.8
BcaC03g18515 Brassica carinata HOM05D004758 ORTHO05D006063 2.0e-10 68.9 58 65.5
Sed0006906 Sechium edule HOM05D004758 ORTHO05D006063 4.5e-10 67.8 57 66.7
SEGI_30407 Sequoiadendron giganteum HOM05D004758 ORTHO05D006063 4.5e-10 67.8 57 63.2
C02p08570 Brassica napus HOM05D004758 ORTHO05D006063 5.8e-10 67.4 58 63.8
Pp3c19_12460 Physcomitrium patens HOM05D004758 ORTHO05D006063 7.6e-10 67.0 57 63.2
MELO3C002835.2 Cucumis melo HOM05D004758 ORTHO05D006063 1.7e-09 65.9 57 61.4
ATR0829G002 Amborella trichopoda HOM05D004758 ORTHO05D006063 2.2e-09 65.5 57 61.4
CsaV3_1G037130 Cucumis sativus L. HOM05D004758 ORTHO05D006063 2.2e-09 65.5 57 61.4
AUR62013587 Chenopodium quinoa HOM05D004758 ORTHO05D006063 5.5e-08 60.8 60 56.7
FAN01G1935 Fragaria x ananassa HOM05D004758 ORTHO05D006063 5.5e-08 60.8 57 59.6
RcHm_v2.0_Chr1g0384241 Rosa chinensis HOM05D004758 ORTHO05D006063 7.1e-08 60.5 58 58.6
AUR62026609 Chenopodium quinoa HOM05D004758 ORTHO05D006063 9.3e-08 60.1 57 59.6
AUR62034925 Chenopodium quinoa HOM05D004758 ORTHO05D006063 9.3e-08 60.1 57 59.6
BcaC03g18514 Brassica carinata HOM05D004758 ORTHO05D006063 1.2e-07 59.7 39 69.2
Potri.013G079600 Populus trichocarpa HOM05D004758 ORTHO05D006063 1.6e-07 59.3 57 59.6
TWI09G0087 Tripterygium wilfordii HOM05D004758 ORTHO05D006063 2.1e-07 58.9 33 75.8
Sc02g0003740 Simmondsia chinensis HOM05D004758 ORTHO05D006063 3.5e-07 58.2 57 56.1
SMO358G0628 Selaginella moellendorffii HOM05D004758 ORTHO05D006063 7.9e-07 57.0 50 56.0
Hund26668 Selenicereus undatus HOM05D004758 ORTHO05D006063 1.8e-06 55.8 58 58.6


User provided reference genes

Program Settings