Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_21916_v3 Cicer arietinum L. HOM05D003929 ORTHO05D004499 2.3e-236 822.0 467 100.0
Medtr4g106880 Medicago truncatula HOM05D003929 ORTHO05D004499 2.5e-198 695.7 492 83.5
TPR.G37553 Trifolium pratense HOM05D003929 ORTHO05D004499 6.4e-194 681.0 495 76.0
Lj4g0023186 Lotus japonicus HOM05D003929 ORTHO05D004499 5.8e-171 604.7 498 74.1
Lalb_Chr13g0297821 Lupinus albus HOM05D003929 ORTHO05D004499 1.7e-167 593.2 495 69.1
Phvul.003G200200 Phaseolus vulgaris HOM05D003929 ORTHO05D004499 2.1e-157 559.7 494 67.2
VMungo1215G1851 Vigna mungo HOM05D003929 ORTHO05D004499 1.1e-153 547.4 497 67.2
Glyma.05G037400 Glycine max HOM05D003929 ORTHO05D004499 2.3e-151 539.7 500 63.8
Glyma.17G089700 Glycine max HOM05D003929 ORTHO05D004499 2.7e-144 516.2 486 64.8
Glyma.06G182600 Glycine max HOM05D003929 ORTHO05D004499 3.0e-143 512.7 505 59.0
Phvul.009G178800 Phaseolus vulgaris HOM05D003929 ORTHO05D004499 4.5e-139 498.8 504 58.3
VMungo1309G0717 Vigna mungo HOM05D003929 ORTHO05D004499 1.2e-136 490.7 505 56.4
Lalb_Chr07g0182721 Lupinus albus HOM05D003929 ORTHO05D004499 3.1e-132 476.1 464 62.7
Prupe.5G174100 Prunus persica HOM05D003929 ORTHO05D004499 3.4e-131 472.6 496 57.5
Potri.012G080800 Populus trichocarpa HOM05D003929 ORTHO05D004499 1.6e-128 463.8 495 56.0
arahy.Tifrunner.gnm1.ann1.W2DQVT Arachis hypogaea HOM05D003929 ORTHO05D004499 1.0e-127 461.1 540 57.2
arahy.Tifrunner.gnm1.ann1.S02CG0 Arachis hypogaea HOM05D003929 ORTHO05D004499 5.1e-127 458.8 510 53.5
Psat4g057880 Pisum sativum HOM05D003929 ORTHO05D004499 4.3e-126 455.7 332 75.3
arahy.Tifrunner.gnm1.ann1.R24CC5 Arachis hypogaea HOM05D003929 ORTHO05D004499 2.2e-125 453.4 515 53.8
Dinv20657 Davidia involucrata HOM05D003929 ORTHO05D004499 2.2e-125 453.4 508 55.5
Cpa.g.sc770.1 Carica papaya HOM05D003929 ORTHO05D004499 4.8e-125 452.2 500 54.4
Lj1g0005514 Lotus japonicus HOM05D003929 ORTHO05D004499 4.8e-125 452.2 495 56.4
CiPaw.11G026500 Carya illinoinensis HOM05D003929 ORTHO05D004499 1.1e-124 451.1 495 54.3
Atru.chr9.2475 Acer truncatum HOM05D003929 ORTHO05D004499 9.1e-124 448.0 494 54.7
Cfa019114 Carpinus fangiana HOM05D003929 ORTHO05D004499 7.7e-123 444.9 526 53.2
Manes.14G066000 Manihot esculenta HOM05D003929 ORTHO05D004499 2.9e-122 443.0 503 58.4
FAN04G3176 Fragaria x ananassa HOM05D003929 ORTHO05D004499 8.5e-122 441.4 510 53.9
RcHm_v2.0_Chr7g0193581 Rosa chinensis HOM05D003929 ORTHO05D004499 1.1e-121 441.0 509 53.6
QL10p011722 Quercus lobata HOM05D003929 ORTHO05D004499 1.4e-121 440.7 511 54.8
FAN13G1321 Fragaria x ananassa HOM05D003929 ORTHO05D004499 1.9e-121 440.3 505 54.7
TWI14G0242 Tripterygium wilfordii HOM05D003929 ORTHO05D004499 2.5e-121 439.9 497 52.9
FvH4_5g05290 Fragaria vesca HOM05D003929 ORTHO05D004499 3.2e-121 439.5 511 53.6
Eucgr.B00317 Eucalyptus grandis HOM05D003929 ORTHO05D004499 4.2e-121 439.1 503 53.9
Lalb_Chr11g0071231 Lupinus albus HOM05D003929 ORTHO05D004499 7.2e-121 438.3 498 54.2
CANSAT80G0843 Cannabis sativa HOM05D003929 ORTHO05D004499 1.2e-120 437.6 503 56.5
Dinv02898 Davidia involucrata HOM05D003929 ORTHO05D004499 1.2e-120 437.6 501 57.1
FAN18G3765 Fragaria x ananassa HOM05D003929 ORTHO05D004499 1.2e-120 437.6 511 53.4
FAN18G3294 Fragaria x ananassa HOM05D003929 ORTHO05D004499 4.7e-120 435.6 511 52.3
GSVIVG01007750001 Vitis vinifera HOM05D003929 ORTHO05D004499 1.0e-119 434.5 501 54.9
Duzib205G0135 Durio zibethinus HOM05D003929 ORTHO05D004499 2.3e-119 433.3 509 53.6
Potri.015G076100 Populus trichocarpa HOM05D003929 ORTHO05D004499 3.3e-118 429.5 502 53.6
Duzib068G1333 Durio zibethinus HOM05D003929 ORTHO05D004499 5.7e-118 428.7 502 54.8
Nitab4.5_0001017g0080 Nicotiana tabacum HOM05D003929 ORTHO05D004499 7.4e-118 428.3 489 53.4
Rhsim08G0171800 Rhododendron simsii HOM05D003929 ORTHO05D004499 2.2e-117 426.8 495 56.0
CSS0017959 Camellia sinensis var. sinensis HOM05D003929 ORTHO05D004499 2.8e-117 426.4 488 56.1
Hma1.2p1_0176F.1_g077430 Hydrangea macrophylla HOM05D003929 ORTHO05D004499 3.7e-117 426.0 504 53.6
PGR083G1389 Punica granatum HOM05D003929 ORTHO05D004499 3.7e-117 426.0 499 51.9
DCAR_026132 Daucus carota HOM05D003929 ORTHO05D004499 1.4e-116 424.1 484 53.1
TAR374G1605 Trochodendron aralioides HOM05D003929 ORTHO05D004499 2.4e-116 423.3 532 55.1
CiPaw.12G026400 Carya illinoinensis HOM05D003929 ORTHO05D004499 1.5e-115 420.6 496 54.2
Manes.06G104600 Manihot esculenta HOM05D003929 ORTHO05D004499 2.6e-115 419.9 477 54.5
ECA232G3264 Erigeron canadensis HOM05D003929 ORTHO05D004499 1.7e-114 417.2 503 53.3
CAN.G628.79 Capsicum annuum HOM05D003929 ORTHO05D004499 1.1e-113 414.5 481 53.8
Thecc.03G012300 Theobroma cacao HOM05D003929 ORTHO05D004499 1.9e-113 413.7 513 51.7
MD14G1180600 Malus domestica HOM05D003929 ORTHO05D004499 5.5e-113 412.1 481 53.8
Solyc06g071470.4 Solanum lycopersicum HOM05D003929 ORTHO05D004499 9.4e-113 411.4 501 52.5
PGSC0003DMG400027090 Solanum tuberosum HOM05D003929 ORTHO05D004499 9.4e-113 411.4 488 53.9
Sopen06g027750 Solanum pennellii HOM05D003929 ORTHO05D004499 1.6e-112 410.6 488 53.5
TWI39G0937 Tripterygium wilfordii HOM05D003929 ORTHO05D004499 6.1e-112 408.7 494 51.8
MSTRG.11449 Avicennia marina HOM05D003929 ORTHO05D004499 1.4e-111 407.5 498 54.6
Gohir.A12G274000 Gossypium hirsutum HOM05D003929 ORTHO05D004499 6.7e-111 405.2 503 51.7
Oeu016382.1 Olea europaea HOM05D003929 ORTHO05D004499 6.7e-111 405.2 500 52.2
Haze_07467 Corylus avellana HOM05D003929 ORTHO05D004499 1.5e-110 404.1 588 46.8
Gohir.D12G274700 Gossypium hirsutum HOM05D003929 ORTHO05D004499 4.4e-110 402.5 507 51.3
Gorai.008G295200 Gossypium raimondii HOM05D003929 ORTHO05D004499 4.4e-110 402.5 507 51.3
Lj5C124G9 Lonicera japonica HOM05D003929 ORTHO05D004499 1.7e-109 400.6 499 54.1
TWI31G0970 Tripterygium wilfordii HOM05D003929 ORTHO05D004499 6.3e-109 398.7 495 50.7
SalBow5G2324 Salvia bowleyana HOM05D003929 ORTHO05D004499 9.1e-108 394.8 492 51.4
ClCG06G017000 Citrullus lanatus HOM05D003929 ORTHO05D004499 2.6e-107 393.3 493 51.1
TAR622G0564 Trochodendron aralioides HOM05D003929 ORTHO05D004499 3.5e-107 392.9 526 48.9
CAN.G781.12 Capsicum annuum HOM05D003929 ORTHO05D004499 7.7e-107 391.7 485 49.5
Sed0022246 Sechium edule HOM05D003929 ORTHO05D004499 7.7e-107 391.7 491 53.0
FAN08G2589 Fragaria x ananassa HOM05D003929 ORTHO05D004499 1.3e-106 391.0 511 50.5
MD06G1174100 Malus domestica HOM05D003929 ORTHO05D004499 8.5e-106 388.3 484 52.5
Peaxi162Scf00017g02914 Petunia axillaris HOM05D003929 ORTHO05D004499 2.5e-105 386.7 478 49.8
Aqoxy3G02955 Aquilegia oxysepala HOM05D003929 ORTHO05D004499 4.2e-105 386.0 505 50.9
HanXRQChr16g0504021 Helianthus annuus HOM05D003929 ORTHO05D004499 7.2e-105 385.2 524 51.1
Nitab4.5_0009783g0030 Nicotiana tabacum HOM05D003929 ORTHO05D004499 8.0e-104 381.7 458 50.7
PSO063G6021 Papaver somniferum HOM05D003929 ORTHO05D004499 5.7e-102 375.6 542 46.7
vmacro19383 Vaccinium macrocarpon HOM05D003929 ORTHO05D004499 1.1e-100 371.3 475 47.8
Lsat_1_v5_gn_4_75281 Lactuca sativa HOM05D003929 ORTHO05D004499 4.1e-100 369.4 513 48.9
Cc04_g14000 Coffea canephora HOM05D003929 ORTHO05D004499 3.5e-99 366.3 504 48.2
CsaV3_1G001520 Cucumis sativus L. HOM05D003929 ORTHO05D004499 7.7e-99 365.2 494 51.0
THA.LOC104821459 Tarenaya hassleriana HOM05D003929 ORTHO05D004499 2.2e-98 363.6 499 48.7
Aa31LG11G880 Aethionema arabicum HOM05D003929 ORTHO05D004499 8.5e-98 361.7 527 43.6
MELO3C026291.2 Cucumis melo HOM05D003929 ORTHO05D004499 7.2e-97 358.6 494 50.2
Hund09434 Selenicereus undatus HOM05D003929 ORTHO05D004499 1.2e-96 357.8 499 46.9
THA.LOC104818232 Tarenaya hassleriana HOM05D003929 ORTHO05D004499 1.6e-96 357.5 427 51.1
Nn1g01975 Nelumbo nucifera HOM05D003929 ORTHO05D004499 4.0e-95 352.8 481 49.7
Migut.I00015 Erythranthe guttata HOM05D003929 ORTHO05D004499 8.8e-95 351.7 495 48.9
COL.COLO4_30035 Corchorus olitorius HOM05D003929 ORTHO05D004499 2.6e-94 350.1 470 47.9
Nitab4.5_0007719g0020 Nicotiana tabacum HOM05D003929 ORTHO05D004499 9.8e-94 348.2 458 48.5
AL8G39770 Arabidopsis lyrata HOM05D003929 ORTHO05D004499 1.3e-93 347.8 513 44.1
PGR044G0511 Punica granatum HOM05D003929 ORTHO05D004499 4.9e-93 345.9 493 46.9
BraA06t25903Z Brassica rapa HOM05D003929 ORTHO05D004499 8.3e-93 345.1 515 43.3
Sp2g25960 Schrenkiella parvula HOM05D003929 ORTHO05D004499 8.3e-93 345.1 514 43.4
Ciclev10024320m.g Citrus clementina HOM05D003929 ORTHO05D004499 5.4e-92 342.4 391 60.1
A06p29570 Brassica napus HOM05D003929 ORTHO05D004499 2.7e-91 340.1 512 42.6
Peaxi162Scf00689g00222 Petunia axillaris HOM05D003929 ORTHO05D004499 2.7e-91 340.1 458 47.8
Carub.0008s2353 Capsella rubella HOM05D003929 ORTHO05D004499 5.9e-91 339.0 515 44.3
PSO832G4520 Papaver somniferum HOM05D003929 ORTHO05D004499 7.7e-91 338.6 542 44.6
AT5G62810 Arabidopsis thaliana HOM05D003929 ORTHO05D004499 1.0e-90 338.2 499 44.3
BcaB02g09694 Brassica carinata HOM05D003929 ORTHO05D004499 1.3e-90 337.8 501 44.1
C03p63930 Brassica napus HOM05D003929 ORTHO05D004499 2.3e-90 337.0 511 42.5
Hma1.2p1_0000F.1_g000890 Hydrangea macrophylla HOM05D003929 ORTHO05D004499 2.3e-90 337.0 489 44.8
BcaC01g02523 Brassica carinata HOM05D003929 ORTHO05D004499 5.0e-90 335.9 511 42.3
BolC3t18647H Brassica oleracea HOM05D003929 ORTHO05D004499 8.6e-90 335.1 513 42.1
MBI10_g41915_MAGBIO Magnolia biondii HOM05D003929 ORTHO05D004499 8.6e-90 335.1 523 45.7
Thhalv10004017m.g Eutrema salsugineum HOM05D003929 ORTHO05D004499 1.5e-89 334.3 520 42.5
CARHR276590 Cardamine hirsuta HOM05D003929 ORTHO05D004499 1.9e-89 334.0 516 41.5
Solyc03g114330.3 Solanum lycopersicum HOM05D003929 ORTHO05D004499 1.9e-89 334.0 449 48.3
EL10Ac5g10751 Beta vulgaris HOM05D003929 ORTHO05D004499 1.6e-88 330.9 502 45.2
C09p08860 Brassica napus HOM05D003929 ORTHO05D004499 1.4e-87 327.8 486 43.6
BolC9t53798H Brassica oleracea HOM05D003929 ORTHO05D004499 1.4e-87 327.8 490 44.3
BcaC04g23392 Brassica carinata HOM05D003929 ORTHO05D004499 2.3e-87 327.0 490 43.9
A09p07860 Brassica napus HOM05D003929 ORTHO05D004499 2.3e-87 327.0 486 43.6
BraA09t36437Z Brassica rapa HOM05D003929 ORTHO05D004499 1.5e-86 324.3 498 43.0
SalBow5G2758 Salvia bowleyana HOM05D003929 ORTHO05D004499 1.2e-83 314.7 491 42.8
SGA_v2.0_scaffold90G27941 Striga asiatica HOM05D003929 ORTHO05D004499 1.4e-79 301.2 506 41.9
Nitab4.5_0000003g0590 Nicotiana tabacum HOM05D003929 ORTHO05D004499 2.3e-79 300.4 485 41.2
Actinidia19318 Actinidia chinensis HOM05D003929 ORTHO05D004499 5.2e-79 299.3 381 49.3
Sed0009068 Sechium edule HOM05D003929 ORTHO05D004499 1.5e-78 297.7 346 56.1
ATR0730G040 Amborella trichopoda HOM05D003929 ORTHO05D004499 4.9e-77 292.7 494 42.9
Ah.11g051630 Amaranthus hybridus HOM05D003618 ORTHO05D004302 1.1e-76 291.6 472 42.4
Migut.D01928 Erythranthe guttata HOM05D003929 ORTHO05D004499 1.3e-74 284.6 453 44.4
Sopen03g033430 Solanum pennellii HOM05D003929 ORTHO05D004499 1.7e-74 284.3 449 44.1
Sc04g0001820 Simmondsia chinensis HOM05D003929 ORTHO05D004499 2.3e-74 283.9 336 53.0
Actinidia33066 Actinidia chinensis HOM05D003929 ORTHO05D004499 1.5e-73 281.2 437 49.4
AUR62030967 Chenopodium quinoa HOM05D003929 ORTHO05D004499 2.1e-72 277.3 477 45.7
Psat4g209200 Pisum sativum HOM05D003929 ORTHO05D004499 7.1e-68 262.3 284 59.2
CDE11G0983 Ceratophyllum demersum HOM05D003929 ORTHO05D004499 9.2e-68 261.9 453 40.6
CDE05G2632 Ceratophyllum demersum HOM05D003929 ORTHO05D004499 1.2e-67 261.5 453 42.8
AUR62008214 Chenopodium quinoa HOM05D003929 ORTHO05D004499 2.7e-67 260.4 464 40.1
HPP92_021833 Vanilla planifolia HOM05D003929 ORTHO05D004499 6.2e-64 249.2 366 47.0
SEGI_11105 Sequoiadendron giganteum HOM05D003929 ORTHO05D004499 3.1e-63 246.9 574 34.7
CSS0023375 Camellia sinensis var. sinensis HOM05D003929 ORTHO05D004499 1.2e-62 245.0 252 65.5
Atru.chr11.2035 Acer truncatum HOM05D003929 ORTHO05D004499 2.0e-62 244.2 448 37.9
Oeu024692.2 Olea europaea HOM05D003929 ORTHO05D004499 9.9e-62 241.9 253 66.4
arahy.Tifrunner.gnm1.ann1.49JIZL Arachis hypogaea HOM05D003929 ORTHO05D004499 4.2e-52 209.9 233 56.7
Oeu022163.1 Olea europaea HOM05D003929 ORTHO05D004499 1.0e-50 205.3 281 44.8
unitig_749.g13474 Utricularia gibba HOM05D003929 ORTHO05D004499 1.3e-50 204.9 381 35.2
Lj9A449T48 Lonicera japonica HOM05D003929 ORTHO05D004499 8.7e-50 202.2 228 49.6
Thecc.02G250700 Theobroma cacao HOM05D003929 ORTHO05D004499 1.1e-49 201.8 413 35.8
Zm00001eb356320 Zea mays HOM05D003929 ORTHO05D004499 1.6e-43 181.4 455 33.4
COL.COLO4_24172 Corchorus olitorius HOM05D003929 ORTHO05D004499 7.9e-43 179.1 390 36.2
Gohir.D02G162200 Gossypium hirsutum HOM05D003929 ORTHO05D004499 1.0e-42 178.7 403 34.0
Gohir.A03G139300 Gossypium hirsutum HOM05D003929 ORTHO05D004499 1.7e-42 177.9 391 34.0
Gorai.005G182200 Gossypium raimondii HOM05D003929 ORTHO05D004499 8.7e-42 175.6 393 34.1
Zm00001eb267680 Zea mays HOM05D003929 ORTHO05D004499 1.3e-40 171.8 484 33.9
Cfa019127 Carpinus fangiana HOM05D003929 ORTHO05D004499 1.4e-39 168.3 181 54.1
Os05g0101200 Oryza sativa ssp. japonica HOM05D003929 ORTHO05D004499 1.9e-36 157.9 476 31.3
Mapoly0102s0017 Marchantia polymorpha HOM05D003929 ORTHO05D004499 7.4e-33 146.0 527 30.6
FAN24G3310 Fragaria x ananassa HOM05D003929 ORTHO05D004499 1.6e-32 144.8 239 42.7
Hund02741 Selenicereus undatus HOM05D003929 ORTHO05D004499 3.4e-30 137.1 455 30.3
HanXRQChr16g0526511 Helianthus annuus HOM05D004647 ORTHO05D005349 1.0e-29 135.6 233 45.1
Zm00001eb126680 Zea mays HOM05D003929 ORTHO05D004499 1.1e-28 132.1 386 30.8
PSO135G0191 Papaver somniferum HOM05D003929 ORTHO05D004499 2.5e-28 131.0 159 52.2
PGR044G1312 Punica granatum HOM05D003929 ORTHO05D004499 4.2e-28 130.2 165 46.7
Os01g0107000 Oryza sativa ssp. japonica HOM05D003929 ORTHO05D004499 6.7e-26 122.9 204 40.7
Pp3c15_21860 Physcomitrium patens HOM05D003929 ORTHO05D004499 1.8e-23 114.8 223 38.1
Pp3c9_20380 Physcomitrium patens HOM05D003929 ORTHO05D004499 2.4e-23 114.4 223 36.8
AagrBONN_evm.TU.Sc2ySwM_117.2261 Anthoceros agrestis HOM05D003929 ORTHO05D004499 1.5e-22 111.7 146 45.2
CBR_g3508 Chara braunii HOM05D003929 ORTHO05D004499 2.6e-22 110.9 227 33.5
SHI17030 Sapria himalayana HOM05D003929 ORTHO05D004499 2.3e-18 97.8 60 75.0
SHI17029 Sapria himalayana HOM05D003929 ORTHO05D004499 4.3e-17 93.6 143 37.1
Lj9A449G50 Lonicera japonica HOM05D003929 ORTHO05D004499 9.7e-17 92.4 128 47.7
Nitab4.5_0000866g0190 Nicotiana tabacum HOM05D003929 ORTHO05D004499 2.8e-16 90.9 121 43.0
PGSC0003DMG400024502 Solanum tuberosum HOM05D003929 ORTHO05D004499 2.4e-15 87.8 107 47.7
CBR_g10793 Chara braunii HOM05D027206 ORTHO05D004499 1.3e-13 82.0 70 61.4
Actinidia19319 Actinidia chinensis HOM05D003618 ORTHO05D004302 3.2e-12 77.4 191 45.5
ClCG01G013120 Citrullus lanatus HOM05D003929 ORTHO05D004499 2.7e-11 74.3 110 39.1
Cre10.g454025 Chlamydomonas reinhardtii HOM05D003929 ORTHO05D004499 6.7e-10 69.7 101 48.5
Os05g0578000 Oryza sativa ssp. japonica HOM05D003929 ORTHO05D004499 2.5e-09 67.8 49 69.4
MCO04G191 Micromonas commoda HOM05D003929 ORTHO05D004499 1.3e-08 65.5 51 60.8
SHI17025 Sapria himalayana HOM05D003929 ORTHO05D004499 6.3e-08 63.2 44 70.5
Zm00001eb296750 Zea mays HOM05D003929 ORTHO05D004499 1.8e-07 61.6 82 45.1
CBR_g3506 Chara braunii HOM05D003929 ORTHO05D004499 2.0e-06 58.2 249 28.9


User provided reference genes

Program Settings