Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_21906_v3 Cicer arietinum L. HOM05D007596 ORTHO05D009672 8.8e-122 440.3 217 100.0
Ca_21924_v3 Cicer arietinum L. HOM05D007596 ORTHO05D009672 8.8e-122 440.3 217 100.0
Psat4g056920 Pisum sativum HOM05D007596 ORTHO05D009672 1.9e-79 299.7 173 85.0
TPR.G37562 Trifolium pratense HOM05D007596 ORTHO05D009672 4.1e-79 298.5 169 84.6
Lj4g0018893 Lotus japonicus HOM05D007596 ORTHO05D009672 9.2e-79 297.4 173 84.4
Lalb_Chr13g0297881 Lupinus albus HOM05D007596 ORTHO05D009672 6.0e-78 294.7 169 83.4
VMungo1215G2651 Vigna mungo HOM05D007596 ORTHO05D009672 1.0e-77 293.9 173 81.5
Phvul.003G198900 Phaseolus vulgaris HOM05D007596 ORTHO05D009672 3.9e-77 292.0 173 83.2
Glyma.05G036200 Glycine max HOM05D007596 ORTHO05D009672 2.5e-76 289.3 173 81.5
arahy.Tifrunner.gnm1.ann1.3E9X4W Arachis hypogaea HOM05D007596 ORTHO05D009672 2.3e-74 282.7 173 77.5
arahy.Tifrunner.gnm1.ann1.8F9XT7 Arachis hypogaea HOM05D007596 ORTHO05D009672 4.0e-74 282.0 173 77.5
Medtr4g106630 Medicago truncatula HOM05D007596 ORTHO05D009672 1.6e-70 270.0 173 77.5
CiPaw.11G029100 Carya illinoinensis HOM05D007596 ORTHO05D009672 4.3e-68 261.9 207 61.8
CANSAT80G2510 Cannabis sativa HOM05D007596 ORTHO05D009672 3.4e-65 252.3 211 60.7
Prupe.5G176300 Prunus persica HOM05D007596 ORTHO05D009672 3.4e-65 252.3 169 72.2
FAN08G2413 Fragaria x ananassa HOM05D007596 ORTHO05D009672 9.9e-65 250.8 169 70.4
FAN13G0067 Fragaria x ananassa HOM05D007596 ORTHO05D009672 9.9e-65 250.8 169 70.4
FvH4_5g05110 Fragaria vesca HOM05D007596 ORTHO05D009672 1.3e-64 250.4 169 70.4
FAN18G0106 Fragaria x ananassa HOM05D007596 ORTHO05D009672 1.3e-64 250.4 169 70.4
Dinv20674 Davidia involucrata HOM05D007596 ORTHO05D009672 3.8e-64 248.8 230 57.0
MD06G1177600 Malus domestica HOM05D007596 ORTHO05D009672 3.8e-64 248.8 169 71.6
EL10Ac5g10784 Beta vulgaris HOM05D007596 ORTHO05D009672 4.9e-64 248.4 169 71.6
Eucgr.K02859 Eucalyptus grandis HOM05D007596 ORTHO05D009672 6.4e-64 248.1 177 67.8
PGSC0003DMG400027097 Solanum tuberosum HOM05D007596 ORTHO05D009672 8.4e-64 247.7 207 59.9
Ciclev10021737m.g Citrus clementina HOM05D007596 ORTHO05D009672 1.9e-63 246.5 207 59.4
Lj9A451T97 Lonicera japonica HOM05D007596 ORTHO05D009672 2.4e-63 246.1 173 69.4
Nitab4.5_0000003g0490 Nicotiana tabacum HOM05D007596 ORTHO05D009672 2.4e-63 246.1 207 59.9
Potri.012G078600 Populus trichocarpa HOM05D007596 ORTHO05D009672 5.4e-63 245.0 173 67.6
RcHm_v2.0_Chr7g0193891 Rosa chinensis HOM05D007596 ORTHO05D009672 5.4e-63 245.0 208 60.1
Sopen06g027660 Solanum pennellii HOM05D007596 ORTHO05D009672 7.1e-63 244.6 207 59.4
GSVIVG01007788001 Vitis vinifera HOM05D007596 ORTHO05D009672 1.2e-62 243.8 211 58.8
Nitab4.5_0007803g0020 Nicotiana tabacum HOM05D007596 ORTHO05D009672 2.7e-62 242.7 207 58.9
Solyc06g071380.3 Solanum lycopersicum HOM05D007596 ORTHO05D009672 3.5e-62 242.3 207 58.9
TWI15G1048 Tripterygium wilfordii HOM05D007596 ORTHO05D009672 6.0e-62 241.5 207 58.0
PGR044G0668 Punica granatum HOM05D007596 ORTHO05D009672 7.8e-62 241.1 175 64.6
Rhsim12G0163300 Rhododendron simsii HOM05D007596 ORTHO05D009672 1.3e-61 240.4 173 65.9
Psat4g101560 Pisum sativum HOM05D007596 ORTHO05D009672 1.7e-61 240.0 173 72.3
CsaV3_1G008350 Cucumis sativus L. HOM05D007596 ORTHO05D009672 6.6e-61 238.0 173 65.9
vmacro16599 Vaccinium macrocarpon HOM05D007596 ORTHO05D009672 8.6e-61 237.7 173 65.9
Atru.chr9.2439 Acer truncatum HOM05D007596 ORTHO05D009672 1.1e-60 237.3 173 68.2
Nn4g22825 Nelumbo nucifera HOM05D007596 ORTHO05D009672 3.3e-60 235.7 173 65.3
Gorai.006G187000 Gossypium raimondii HOM05D007596 ORTHO05D009672 9.6e-60 234.2 174 68.4
CSS0015692 Camellia sinensis var. sinensis HOM05D007596 ORTHO05D009672 2.8e-59 232.6 211 55.0
ClCG01G013000 Citrullus lanatus HOM05D007596 ORTHO05D009672 2.8e-59 232.6 173 63.6
Gohir.A09G169500 Gossypium hirsutum HOM05D007596 ORTHO05D009672 3.6e-59 232.3 174 67.8
DCAR_026124 Daucus carota HOM05D007596 ORTHO05D009672 4.7e-59 231.9 173 64.2
Sed0010804 Sechium edule HOM05D007596 ORTHO05D009672 4.7e-59 231.9 173 64.2
Thecc.03G008700 Theobroma cacao HOM05D007596 ORTHO05D009672 8.1e-59 231.1 207 55.6
Cc04_g12800 Coffea canephora HOM05D007596 ORTHO05D009672 1.1e-58 230.7 173 65.3
Duzib205G0154 Durio zibethinus HOM05D007596 ORTHO05D009672 1.1e-58 230.7 207 56.0
Sabra12G0056400 Salix brachista HOM05D007596 ORTHO05D009672 2.4e-58 229.6 215 56.3
Manes.06G103100 Manihot esculenta HOM05D007596 ORTHO05D009672 3.1e-58 229.2 173 63.0
TAR374G1438 Trochodendron aralioides HOM05D007596 ORTHO05D009672 6.9e-58 228.0 169 65.1
SalBow5G3112 Salvia bowleyana HOM05D007596 ORTHO05D009672 8.9e-58 227.6 169 65.7
Aqoxy3G00967 Aquilegia oxysepala HOM05D007596 ORTHO05D009672 1.2e-57 227.3 173 63.6
FAN18G0038 Fragaria x ananassa HOM05D007596 ORTHO05D009672 1.2e-57 227.3 161 67.7
HanXRQChr16g0503661 Helianthus annuus HOM05D007596 ORTHO05D009672 4.4e-57 225.3 173 64.7
Hund02735 Selenicereus undatus HOM05D007596 ORTHO05D009672 7.6e-57 224.6 213 55.4
Hma1.2p1_0701F.1_g205970 Hydrangea macrophylla HOM05D007596 ORTHO05D009672 9.9e-57 224.2 173 65.3
Migut.I00032 Erythranthe guttata HOM05D007596 ORTHO05D009672 2.2e-56 223.0 169 65.7
ECA232G2922 Erigeron canadensis HOM05D007596 ORTHO05D009672 2.9e-56 222.6 169 64.5
SGA_v2.0_scaffold90G27960 Striga asiatica HOM05D007596 ORTHO05D009672 3.8e-56 222.2 169 63.9
Oeu041561.1 Olea europaea HOM05D007596 ORTHO05D009672 6.4e-56 221.5 207 55.6
PSO063G6591 Papaver somniferum HOM05D007596 ORTHO05D009672 1.1e-55 220.7 169 62.7
PSO832G1789 Papaver somniferum HOM05D007596 ORTHO05D009672 1.1e-55 220.7 169 62.7
HPP92_019181 Vanilla planifolia HOM05D007596 ORTHO05D009672 1.1e-55 220.7 208 53.4
Sc04g0001910 Simmondsia chinensis HOM05D007596 ORTHO05D009672 4.2e-55 218.8 173 63.0
MSTRG.11436 Avicennia marina HOM05D007596 ORTHO05D009672 2.7e-54 216.1 169 62.1
MBI15_g31109_MAGBIO Magnolia biondii HOM05D007596 ORTHO05D009672 1.0e-53 214.2 173 60.1
ATR0691G114 Amborella trichopoda HOM05D007596 ORTHO05D009672 1.1e-52 210.7 173 57.8
COL.COLO4_34057 Corchorus olitorius HOM05D007596 ORTHO05D009672 3.6e-51 205.7 212 52.8
QL10p012241 Quercus lobata HOM05D007596 ORTHO05D009672 2.2e-48 196.4 139 70.5
Ah.13g077910 Amaranthus hybridus HOM05D007596 ORTHO05D004562 1.4e-47 193.7 216 51.9
Zm00001eb080350 Zea mays HOM05D007596 ORTHO05D009672 2.4e-47 193.0 209 48.3
Peaxi162Scf00689g00036 Petunia axillaris HOM05D007596 ORTHO05D009672 9.3e-47 191.0 207 49.8
Os04g0465800 Oryza sativa ssp. japonica HOM05D007596 ORTHO05D009672 1.2e-46 190.7 172 54.1
Gohir.D09G165200 Gossypium hirsutum HOM05D007596 ORTHO05D009672 8.1e-43 177.9 174 55.7
Lsat_1_v5_gn_4_73100 Lactuca sativa HOM05D007596 ORTHO05D009672 1.4e-42 177.2 173 52.6
Haze_07490 Corylus avellana HOM05D007596 ORTHO05D009672 7.6e-41 171.4 138 63.8
Cfa019092 Carpinus fangiana HOM05D007596 ORTHO05D009672 2.2e-40 169.9 130 65.4
SMO347G0014 Selaginella moellendorffii HOM05D007596 ORTHO05D009672 4.9e-40 168.7 169 49.1
SGA_v2.0_scaffold90G27962 Striga asiatica HOM05D007596 ORTHO05D009672 8.4e-40 167.9 168 51.2
FAN04G0664 Fragaria x ananassa HOM05D007596 ORTHO05D009672 1.9e-36 156.8 113 67.3
COL.COLO4_33480 Corchorus olitorius HOM05D007596 ORTHO05D009672 2.9e-32 142.9 109 65.1
Cpa.g.c40406 Carica papaya HOM05D007596 ORTHO05D009672 1.1e-26 124.4 116 56.9
unitig_26.g8797 Utricularia gibba HOM05D007596 ORTHO05D009672 2.3e-21 106.7 171 39.8
FvH4_5g16630 Fragaria vesca HOM05D007596 ORTHO05D009672 6.9e-18 95.1 168 38.1
FAN18G2080 Fragaria x ananassa HOM05D007596 ORTHO05D009672 2.0e-17 93.6 168 38.1
Glyma.17G091200 Glycine max HOM05D007596 ORTHO05D009672 4.5e-17 92.4 106 50.0
Sc11g0005570 Simmondsia chinensis HOM05D007596 ORTHO05D009672 1.0e-16 91.3 53 69.8
Sc11g0005890 Simmondsia chinensis HOM05D007596 ORTHO05D009672 3.8e-16 89.4 82 48.8
SGA_v2.0_scaffold90G27974 Striga asiatica HOM05D001155 ORTHO05D001080 2.7e-14 83.2 94 48.9
SGA_v2.0_scaffold90G27967 Striga asiatica HOM05D007596 ORTHO05D009672 1.0e-13 81.3 75 52.0
CBR_g18641 Chara braunii HOM05D007596 ORTHO05D009672 8.8e-13 78.2 61 59.0
EL10Ac4g09605 Beta vulgaris HOM05D004918 ORTHO05D005706 7.4e-12 75.1 66 62.1
CiPaw.11G029000 Carya illinoinensis HOM05D007596 ORTHO05D009672 4.5e-09 65.9 68 44.1
AUR62030990 Chenopodium quinoa HOM05D007596 ORTHO05D009672 3.8e-08 62.8 35 68.6


User provided reference genes

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