Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_21888_v3 Cicer arietinum L. HOM05D002759 ORTHO05D003290 6.1e-140 500.7 240 100.0
FvH4_5g29930 Fragaria vesca HOM05D002759 ORTHO05D003290 4.1e-27 125.9 163 42.3
FvH4_3g35420 Fragaria vesca HOM05D002759 ORTHO05D003290 9.0e-27 124.8 162 43.2
FAN11G2638 Fragaria x ananassa HOM05D002759 ORTHO05D003290 9.0e-27 124.8 162 43.2
FAN16G3014 Fragaria x ananassa HOM05D002759 ORTHO05D003290 9.0e-27 124.8 162 43.2
RcHm_v2.0_Chr7g0222331 Rosa chinensis HOM05D002759 ORTHO05D003290 1.0e-25 121.3 173 38.7
FAN04G1156 Fragaria x ananassa HOM05D002759 ORTHO05D003290 2.2e-25 120.2 163 40.5
SGA_v2.0_scaffold110G31284 Striga asiatica HOM05D002759 ORTHO05D003290 9.3e-24 114.8 170 37.6
Lalb_Chr20g0123401 Lupinus albus HOM05D002759 ORTHO05D003290 6.1e-23 112.1 191 38.2
Migut.B00666 Erythranthe guttata HOM05D002759 ORTHO05D003290 7.9e-23 111.7 167 38.9
Ca_00091_v3 Cicer arietinum L. HOM05D002759 ORTHO05D003290 1.0e-22 111.3 193 35.8
Ca_29930_v3 Cicer arietinum L. HOM05D002759 ORTHO05D003290 1.0e-22 111.3 193 35.8
Psat1g219920 Pisum sativum HOM05D002759 ORTHO05D003290 1.3e-22 110.9 193 35.8
Manes.07G013200 Manihot esculenta HOM05D002759 ORTHO05D003290 1.8e-22 110.5 193 36.3
Oeu037466.1 Olea europaea HOM05D002759 ORTHO05D003290 1.8e-22 110.5 166 36.7
EL10Ac3g05252 Beta vulgaris HOM05D002759 ORTHO05D003290 2.3e-22 110.2 194 36.6
Medtr2g007790 Medicago truncatula HOM05D002759 ORTHO05D003290 2.3e-22 110.2 193 37.3
FAN08G3490 Fragaria x ananassa HOM05D002759 ORTHO05D003290 3.0e-22 109.8 159 39.6
SalBow5G5260 Salvia bowleyana HOM05D002759 ORTHO05D003290 3.9e-22 109.4 163 37.4
TPR.G2149 Trifolium pratense HOM05D002759 ORTHO05D003290 3.9e-22 109.4 193 36.8
Medtr7g023120 Medicago truncatula HOM05D002759 ORTHO05D003290 5.1e-22 109.0 193 36.3
TWI59G0497 Tripterygium wilfordii HOM05D002759 ORTHO05D003290 6.7e-22 108.6 187 36.4
Ciclev10000008m.g Citrus clementina HOM05D002759 ORTHO05D003290 8.7e-22 108.2 188 35.6
MSTRG.16534 Avicennia marina HOM05D002759 ORTHO05D003290 1.1e-21 107.8 171 36.3
Sopen01g046990 Solanum pennellii HOM05D002759 ORTHO05D003290 1.1e-21 107.8 190 33.7
arahy.Tifrunner.gnm1.ann1.JK8JKR Arachis hypogaea HOM05D002759 ORTHO05D003290 1.5e-21 107.5 152 38.8
BcaNung01007 Brassica carinata HOM05D002759 ORTHO05D003290 1.5e-21 107.5 209 34.9
Solyc01g104490.3 Solanum lycopersicum HOM05D002759 ORTHO05D003290 1.5e-21 107.5 190 34.7
Ah.07g205400 Amaranthus hybridus HOM05D002759 ORTHO05D003290 1.9e-21 107.1 193 34.7
QL02p098685 Quercus lobata HOM05D002759 ORTHO05D003290 1.9e-21 107.1 192 35.4
CAN.G1352.21 Capsicum annuum HOM05D002759 ORTHO05D003290 2.5e-21 106.7 193 33.2
Phvul.006G212401 Phaseolus vulgaris HOM05D002759 ORTHO05D003290 2.5e-21 106.7 191 36.1
PGR042G2027 Punica granatum HOM05D002759 ORTHO05D003290 2.5e-21 106.7 199 36.2
Sp7g21060 Schrenkiella parvula HOM05D002759 ORTHO05D003290 2.5e-21 106.7 200 35.5
CiPaw.05G042600 Carya illinoinensis HOM05D002759 ORTHO05D003290 3.3e-21 106.3 193 34.7
PSO528G0214 Papaver somniferum HOM05D002759 ORTHO05D003290 3.3e-21 106.3 193 34.2
ECA234G1843 Erigeron canadensis HOM05D002759 ORTHO05D003290 4.3e-21 105.9 190 34.2
HanXRQChr10g0290421 Helianthus annuus HOM05D002759 ORTHO05D003290 4.3e-21 105.9 190 34.2
Nitab4.5_0004005g0050 Nicotiana tabacum HOM05D002759 ORTHO05D003290 4.3e-21 105.9 193 33.7
Sabra03G0013600 Salix brachista HOM05D002759 ORTHO05D003290 4.3e-21 105.9 193 36.8
arahy.Tifrunner.gnm1.ann1.YVTC7U Arachis hypogaea HOM05D002759 ORTHO05D003290 5.7e-21 105.5 190 35.8
A01p14240 Brassica napus HOM05D002759 ORTHO05D003290 5.7e-21 105.5 202 35.1
C01p17510 Brassica napus HOM05D002759 ORTHO05D003290 5.7e-21 105.5 202 35.1
C07p52320 Brassica napus HOM05D002759 ORTHO05D003290 5.7e-21 105.5 203 36.0
AUR62035559 Chenopodium quinoa HOM05D002759 ORTHO05D003290 5.7e-21 105.5 194 35.6
Potri.003G021700 Populus trichocarpa HOM05D002759 ORTHO05D003290 5.7e-21 105.5 193 36.3
unitig_26.g9017 Utricularia gibba HOM05D002759 ORTHO05D003290 5.7e-21 105.5 158 36.1
BcaC09g51048 Brassica carinata HOM05D002759 ORTHO05D003290 7.4e-21 105.1 202 35.1
A03p53910 Brassica napus HOM05D002759 ORTHO05D003290 7.4e-21 105.1 203 36.0
BolC1t01691H Brassica oleracea HOM05D002759 ORTHO05D003290 7.4e-21 105.1 202 35.1
BraA03t14460Z Brassica rapa HOM05D002759 ORTHO05D003290 7.4e-21 105.1 203 36.0
Lj6g0007416 Lotus japonicus HOM05D002759 ORTHO05D003290 7.4e-21 105.1 193 35.8
arahy.Tifrunner.gnm1.ann1.VDG0KY Arachis hypogaea HOM05D002759 ORTHO05D003290 1.3e-20 104.4 189 36.0
Nn5g28049 Nelumbo nucifera HOM05D002759 ORTHO05D003290 1.3e-20 104.4 192 35.9
PSO170G2118 Papaver somniferum HOM05D002759 ORTHO05D003290 1.3e-20 104.4 193 34.2
BraA01t01371Z Brassica rapa HOM05D002759 ORTHO05D003290 1.7e-20 104.0 200 34.5
CsaV3_6G032190 Cucumis sativus L. HOM05D002759 ORTHO05D003290 1.7e-20 104.0 190 35.3
Glyma.15G048100 Glycine max HOM05D002759 ORTHO05D003290 1.7e-20 104.0 192 35.4
CARHR230000 Cardamine hirsuta HOM05D002759 ORTHO05D003290 2.2e-20 103.6 200 35.0
Cfa017189 Carpinus fangiana HOM05D002759 ORTHO05D003290 2.2e-20 103.6 192 33.9
AUR62006068 Chenopodium quinoa HOM05D002759 ORTHO05D003290 2.2e-20 103.6 193 34.7
MELO3C011463.2 Cucumis melo HOM05D002759 ORTHO05D003290 2.2e-20 103.6 194 34.5
Gohir.A01G176651 Gossypium hirsutum HOM05D002759 ORTHO05D003290 2.2e-20 103.6 193 34.2
Thhalv10024187m.g Eutrema salsugineum HOM05D002759 ORTHO05D003290 2.8e-20 103.2 204 34.3
Aa31LG6G5020 Aethionema arabicum HOM05D002759 ORTHO05D003290 3.7e-20 102.8 197 33.5
Cc02_g22260 Coffea canephora HOM05D002759 ORTHO05D003290 3.7e-20 102.8 191 35.6
Glyma.08G184200 Glycine max HOM05D002759 ORTHO05D003290 3.7e-20 102.8 191 35.6
Lj1g0017629 Lotus japonicus HOM05D002759 ORTHO05D003290 3.7e-20 102.8 193 35.2
AT4G22970 Arabidopsis thaliana HOM05D002759 ORTHO05D003290 4.8e-20 102.4 197 34.0
Haze_21022 Corylus avellana HOM05D002759 ORTHO05D003290 4.8e-20 102.4 192 33.9
Gohir.D01G167432 Gossypium hirsutum HOM05D002759 ORTHO05D003290 4.8e-20 102.4 193 33.7
Gorai.002G207900 Gossypium raimondii HOM05D002759 ORTHO05D003290 4.8e-20 102.4 193 33.7
Nitab4.5_0005539g0020 Nicotiana tabacum HOM05D002759 ORTHO05D003290 6.3e-20 102.1 193 32.6
COL.COLO4_08439 Corchorus olitorius HOM05D002759 ORTHO05D003290 1.8e-19 100.5 177 37.3
TAR381G0620 Trochodendron aralioides HOM05D002759 ORTHO05D003290 1.8e-19 100.5 192 34.9
Actinidia39057 Actinidia chinensis HOM05D002759 ORTHO05D003290 2.4e-19 100.1 190 34.7
Prupe.1G563000 Prunus persica HOM05D002759 ORTHO05D003290 2.4e-19 100.1 197 34.0
RcHm_v2.0_Chr7g0177921 Rosa chinensis HOM05D002759 ORTHO05D003290 2.4e-19 100.1 158 38.0
THA.LOC104814230 Tarenaya hassleriana HOM05D002759 ORTHO05D003290 2.4e-19 100.1 201 33.8
CANSAT11G0811 Cannabis sativa HOM05D002759 ORTHO05D003290 3.1e-19 99.8 192 34.9
Carub.0007s1830 Capsella rubella HOM05D002759 ORTHO05D003290 4.1e-19 99.4 199 33.2
ClCG08G010020 Citrullus lanatus HOM05D002759 ORTHO05D003290 4.1e-19 99.4 192 34.4
MD15G1419000 Malus domestica HOM05D002759 ORTHO05D003290 4.1e-19 99.4 194 33.0
Rhsim11G0131800 Rhododendron simsii HOM05D002759 ORTHO05D003290 5.3e-19 99.0 193 32.6
Aqoxy3G00692 Aquilegia oxysepala HOM05D002759 ORTHO05D003290 6.9e-19 98.6 194 32.5
AL7G30550 Arabidopsis lyrata HOM05D002759 ORTHO05D003290 9.1e-19 98.2 200 32.5
Thecc.02G041500 Theobroma cacao HOM05D002759 ORTHO05D003290 9.1e-19 98.2 194 34.0
AagrBONN_evm.TU.Sc2ySwM_117.1581 Anthoceros agrestis HOM05D002759 ORTHO05D003290 1.2e-18 97.8 168 35.7
BolC7t45725H Brassica oleracea HOM05D002759 ORTHO05D003290 1.2e-18 97.8 212 34.4
Lsat_1_v5_gn_5_109460 Lactuca sativa HOM05D002759 ORTHO05D003290 1.2e-18 97.8 196 33.2
SMO356G0583 Selaginella moellendorffii HOM05D002759 ORTHO05D003290 1.2e-18 97.8 183 32.8
CDE09G0711 Ceratophyllum demersum HOM05D002759 ORTHO05D003290 1.5e-18 97.4 201 33.3
HPP92_009112 Vanilla planifolia HOM05D002759 ORTHO05D003290 1.5e-18 97.4 191 30.4
Atru.chr6.1027 Acer truncatum HOM05D002759 ORTHO05D003290 2.0e-18 97.1 191 32.5
CSS0015736 Camellia sinensis var. sinensis HOM05D002759 ORTHO05D003290 2.0e-18 97.1 107 43.9
Zm00001eb193470 Zea mays HOM05D002759 ORTHO05D003290 2.0e-18 97.1 199 31.7
Atru.chr6.1078 Acer truncatum HOM05D002759 ORTHO05D003290 2.6e-18 96.7 191 32.5
Peaxi162Scf00011g00138 Petunia axillaris HOM05D002759 ORTHO05D003290 2.6e-18 96.7 106 45.3
Lj9A311T56 Lonicera japonica HOM05D002759 ORTHO05D003290 4.5e-18 95.9 202 33.7
Hund11642 Selenicereus undatus HOM05D002759 ORTHO05D003290 5.9e-18 95.5 191 34.6
Duzib052G0069 Durio zibethinus HOM05D002759 ORTHO05D003290 1.0e-17 94.7 192 32.3
FAN25G1732 Fragaria x ananassa HOM05D002759 ORTHO05D003290 1.0e-17 94.7 94 47.9
Hund21015 Selenicereus undatus HOM05D002759 ORTHO05D003290 1.3e-17 94.4 104 45.2
Eucgr.G00634 Eucalyptus grandis HOM05D002759 ORTHO05D003290 3.8e-17 92.8 104 45.2
Sed0002146 Sechium edule HOM05D002759 ORTHO05D003290 6.5e-17 92.0 192 32.8
GSVIVG01023021001 Vitis vinifera HOM05D002759 ORTHO05D003290 1.1e-16 91.3 103 43.7
Aqoxy7G02142 Aquilegia oxysepala HOM05D002759 ORTHO05D003290 1.4e-16 90.9 188 34.0
Sc19g0000800 Simmondsia chinensis HOM05D002759 ORTHO05D003290 1.9e-16 90.5 104 42.3
Pp3c8_2900 Physcomitrium patens HOM05D002759 ORTHO05D003290 2.5e-16 90.1 201 29.4
BcaC02g11623 Brassica carinata HOM05D002759 ORTHO05D003290 3.2e-16 89.7 171 33.9
C04p12980 Brassica napus HOM05D002759 ORTHO05D003290 3.2e-16 89.7 171 33.9
C04p13080 Brassica napus HOM05D002759 ORTHO05D003290 3.2e-16 89.7 171 33.9
BolC4t22942H Brassica oleracea HOM05D002759 ORTHO05D003290 3.2e-16 89.7 171 33.9
DCAR_005626 Daucus carota HOM05D002759 ORTHO05D003290 3.2e-16 89.7 103 42.7
vmacro01782 Vaccinium macrocarpon HOM05D002759 ORTHO05D003290 3.2e-16 89.7 102 42.2
ATR0661G182 Amborella trichopoda HOM05D002759 ORTHO05D003290 4.2e-16 89.4 197 31.0
Os02g0770700 Oryza sativa ssp. japonica HOM05D002759 ORTHO05D003290 5.5e-16 89.0 192 31.2
BolC4t22359H Brassica oleracea HOM05D002759 ORTHO05D003290 1.2e-15 87.8 171 33.9
SEGI_09006 Sequoiadendron giganteum HOM05D002759 ORTHO05D003290 2.7e-15 86.7 114 36.8
Aqoxy3G00697 Aquilegia oxysepala HOM05D002759 ORTHO05D003290 3.6e-15 86.3 183 32.8
Cre01.g029200 Chlamydomonas reinhardtii HOM05D002759 ORTHO05D003290 6.1e-15 85.5 164 32.3
CARHR073260 Cardamine hirsuta HOM05D002759 ORTHO05D003290 1.0e-14 84.7 168 35.1
C04p07370 Brassica napus HOM05D002759 ORTHO05D003290 1.4e-14 84.3 155 34.2
Thhalv10029518m.g Eutrema salsugineum HOM05D002759 ORTHO05D003290 1.4e-14 84.3 132 35.6
GSVIVG01013912001 Vitis vinifera HOM05D003578 ORTHO05D004021 2.3e-14 83.6 103 41.7
Oeu043988.1 Olea europaea HOM05D002759 ORTHO05D003290 3.9e-14 82.8 127 40.9
Mapoly0118s0005 Marchantia polymorpha HOM05D002759 ORTHO05D003290 1.7e-12 77.4 191 27.2
vmacro01786 Vaccinium macrocarpon HOM05D002759 ORTHO05D003290 2.2e-12 77.0 78 44.9
Cpa.g.sc148.32 Carica papaya HOM05D002759 ORTHO05D003290 2.8e-12 76.6 102 38.2
CBR_g18638 Chara braunii HOM05D002759 ORTHO05D003290 3.7e-12 76.3 105 36.2
CARHR254490 Cardamine hirsuta HOM05D002759 ORTHO05D003290 4.8e-12 75.9 120 37.5
C04p13010 Brassica napus HOM05D002759 ORTHO05D003290 1.1e-11 74.7 123 36.6
C04p13060 Brassica napus HOM05D002759 ORTHO05D003290 1.1e-11 74.7 123 36.6
Atru.chr12.1442 Acer truncatum HOM05D002759 ORTHO05D003290 2.4e-11 73.6 166 29.5
Actinidia00221 Actinidia chinensis HOM05D002759 ORTHO05D003290 4.5e-10 69.3 151 32.5
SEGI_36881 Sequoiadendron giganteum HOM05D002759 ORTHO05D003290 3.2e-08 63.2 81 39.5
RcHm_v2.0_Chr7g0223761 Rosa chinensis HOM05D002759 ORTHO05D003290 3.0e-06 56.6 125 28.8


User provided reference genes

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