Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_21840_v3 Cicer arietinum L. HOM05D005535 ORTHO05D006753 3.7e-173 611.7 366 100.0
TPR.G27376 Trifolium pratense HOM05D005535 ORTHO05D006753 6.4e-117 424.9 402 66.7
Medtr4g108100 Medicago truncatula HOM05D005535 ORTHO05D006753 5.7e-105 385.2 391 65.7
Psat4g052400 Pisum sativum HOM05D005535 ORTHO05D006753 6.9e-103 378.3 347 65.1
Lj4g0008602 Lotus japonicus HOM05D005535 ORTHO05D006753 3.1e-95 352.8 366 59.6
Glyma.17G098100 Glycine max HOM05D005535 ORTHO05D006753 2.1e-91 340.1 401 60.1
Glyma.05G028700 Glycine max HOM05D005535 ORTHO05D006753 6.1e-91 338.6 375 60.5
arahy.Tifrunner.gnm1.ann1.WGP01G Arachis hypogaea HOM05D005535 ORTHO05D006753 4.8e-88 328.9 383 58.0
Lalb_Chr12g0196771 Lupinus albus HOM05D005535 ORTHO05D006753 4.2e-84 315.8 367 55.9
Lalb_Chr13g0303381 Lupinus albus HOM05D005535 ORTHO05D006753 3.0e-82 309.7 367 55.9
VMungo1215G1657 Vigna mungo HOM05D005535 ORTHO05D006753 8.8e-82 308.1 368 53.8
arahy.Tifrunner.gnm1.ann1.G5WMYY Arachis hypogaea HOM05D005535 ORTHO05D006753 2.0e-81 307.0 380 56.6
Glyma.04G173200 Glycine max HOM05D005535 ORTHO05D006753 9.7e-81 304.7 373 53.6
Lj1g0015301 Lotus japonicus HOM05D005535 ORTHO05D006753 6.3e-80 302.0 375 57.3
Duzib084G1387 Durio zibethinus HOM05D005535 ORTHO05D006753 4.1e-79 299.3 373 51.2
Glyma.06G191000 Glycine max HOM05D005535 ORTHO05D006753 2.2e-77 293.5 374 53.2
Duzib205G0302 Durio zibethinus HOM05D005535 ORTHO05D006753 4.2e-76 289.3 360 51.7
Gohir.D12G178800 Gossypium hirsutum HOM05D005535 ORTHO05D006753 4.2e-76 289.3 375 50.9
Thecc.03G081300 Theobroma cacao HOM05D005535 ORTHO05D006753 1.2e-75 287.7 368 51.1
QL10p015851 Quercus lobata HOM05D005535 ORTHO05D006753 1.6e-75 287.3 377 51.5
Phvul.003G191800 Phaseolus vulgaris HOM05D005535 ORTHO05D006753 4.7e-75 285.8 375 52.8
Cfa018977 Carpinus fangiana HOM05D005535 ORTHO05D006753 8.0e-75 285.0 377 52.0
Gohir.A12G175600 Gossypium hirsutum HOM05D005535 ORTHO05D006753 2.3e-74 283.5 371 55.3
Gorai.008G191600 Gossypium raimondii HOM05D005535 ORTHO05D006753 3.3e-73 279.6 384 49.5
CiPaw.12G015700 Carya illinoinensis HOM05D005535 ORTHO05D006753 1.4e-71 274.2 375 50.4
Dinv38677 Davidia involucrata HOM05D005535 ORTHO05D006753 1.4e-71 274.2 373 49.6
Ciclev10020848m.g Citrus clementina HOM05D005535 ORTHO05D006753 4.1e-71 272.7 357 52.1
PGR083G2381 Punica granatum HOM05D005535 ORTHO05D006753 7.0e-71 271.9 371 50.1
Manes.06G095400 Manihot esculenta HOM05D005535 ORTHO05D006753 1.6e-70 270.8 372 49.5
GSVIVG01008044001 Vitis vinifera HOM05D005535 ORTHO05D006753 1.6e-70 270.8 374 49.2
Haze_07363 Corylus avellana HOM05D005535 ORTHO05D006753 2.7e-70 270.0 363 52.6
Eucgr.B00441 Eucalyptus grandis HOM05D005535 ORTHO05D006753 3.5e-70 269.6 369 49.6
Dinv19929 Davidia involucrata HOM05D005535 ORTHO05D006753 5.9e-70 268.9 267 61.8
Actinidia04914 Actinidia chinensis HOM05D005535 ORTHO05D006753 1.3e-69 267.7 362 50.6
Phvul.009G189600 Phaseolus vulgaris HOM05D005535 ORTHO05D006753 1.7e-69 267.3 377 50.1
CSS0007804 Camellia sinensis var. sinensis HOM05D005535 ORTHO05D006753 2.2e-69 266.9 363 50.4
Actinidia37646 Actinidia chinensis HOM05D005535 ORTHO05D006753 6.5e-69 265.4 371 48.8
Atru.chr9.2302 Acer truncatum HOM05D005535 ORTHO05D006753 1.1e-68 264.6 338 51.2
Hma1.2p1_1617F.1_g293810 Hydrangea macrophylla HOM05D005535 ORTHO05D006753 1.1e-68 264.6 320 52.8
CANSAT80G1786 Cannabis sativa HOM05D005535 ORTHO05D006753 2.5e-68 263.5 364 50.5
Lj9A460T58 Lonicera japonica HOM05D005535 ORTHO05D006753 2.5e-68 263.5 261 59.8
Actinidia19054 Actinidia chinensis HOM05D005535 ORTHO05D006753 4.2e-68 262.7 372 48.9
COL.COLO4_14041 Corchorus olitorius HOM05D005535 ORTHO05D006753 9.4e-68 261.5 373 49.1
vmacro16564 Vaccinium macrocarpon HOM05D005535 ORTHO05D006753 1.2e-67 261.2 358 49.2
Rhsim08G0158400 Rhododendron simsii HOM05D005535 ORTHO05D006753 4.7e-67 259.2 361 47.4
TAR371G0260 Trochodendron aralioides HOM05D005535 ORTHO05D006753 6.1e-67 258.8 357 49.0
Hma1.2p1_0104F.1_g050150 Hydrangea macrophylla HOM05D005535 ORTHO05D006753 1.4e-66 257.7 378 48.1
VMungo1309G2126 Vigna mungo HOM05D005535 ORTHO05D006753 1.4e-66 257.7 276 57.6
ClCG06G016340 Citrullus lanatus HOM05D005535 ORTHO05D006753 2.3e-66 256.9 378 48.9
TAR629G1161 Trochodendron aralioides HOM05D005535 ORTHO05D006753 8.8e-66 255.0 341 49.3
CSS0007998 Camellia sinensis var. sinensis HOM05D005535 ORTHO05D006753 1.5e-65 254.2 354 47.5
Sed0009946 Sechium edule HOM05D005535 ORTHO05D006753 4.4e-65 252.7 377 47.7
TWI60G0583 Tripterygium wilfordii HOM05D005535 ORTHO05D006753 5.7e-65 252.3 244 63.5
Actinidia34981 Actinidia chinensis HOM05D005535 ORTHO05D006753 1.3e-64 251.1 376 52.7
Nitab4.5_0004785g0010 Nicotiana tabacum HOM05D005535 ORTHO05D006753 2.2e-64 250.4 358 47.2
Nn3g17153 Nelumbo nucifera HOM05D005535 ORTHO05D006753 3.7e-64 249.6 259 59.1
vmacro17524 Vaccinium macrocarpon HOM05D005535 ORTHO05D006753 8.3e-64 248.4 268 57.5
MELO3C017158.2 Cucumis melo HOM05D005535 ORTHO05D006753 1.4e-63 247.7 378 47.6
RcHm_v2.0_Chr7g0180761 Rosa chinensis HOM05D005535 ORTHO05D006753 1.4e-63 247.7 258 58.9
Nitab4.5_0000785g0140 Nicotiana tabacum HOM05D005535 ORTHO05D006753 1.8e-63 247.3 364 47.3
CsaV3_1G002190 Cucumis sativus L. HOM05D005535 ORTHO05D006753 2.4e-63 246.9 377 47.5
MSTRG.11394 Avicennia marina HOM05D005535 ORTHO05D006753 1.2e-62 244.6 256 55.9
Cc04_g15390 Coffea canephora HOM05D005535 ORTHO05D006753 2.7e-62 243.4 366 47.3
Aqoxy3G00718 Aquilegia oxysepala HOM05D005535 ORTHO05D006753 1.0e-61 241.5 386 45.1
Prupe.5G188200 Prunus persica HOM05D005535 ORTHO05D006753 2.2e-61 240.4 344 49.7
Nitab4.5_0004931g0020 Nicotiana tabacum HOM05D005535 ORTHO05D006753 6.5e-61 238.8 370 45.1
AUR62021726 Chenopodium quinoa HOM05D005535 ORTHO05D006753 1.5e-60 237.7 360 46.4
Migut.I00138 Erythranthe guttata HOM05D005535 ORTHO05D006753 1.9e-60 237.3 351 47.3
Rhsim12G0158200 Rhododendron simsii HOM05D005535 ORTHO05D006753 2.5e-60 236.9 369 45.8
Peaxi162Scf00009g00219 Petunia axillaris HOM05D005535 ORTHO05D006753 7.2e-60 235.3 244 56.6
Hund09363 Selenicereus undatus HOM05D005535 ORTHO05D006753 9.5e-60 235.0 365 44.9
Nitab4.5_0000269g0110 Nicotiana tabacum HOM05D005535 ORTHO05D006753 2.8e-59 233.4 362 45.0
SalBow5G2281 Salvia bowleyana HOM05D005535 ORTHO05D006753 8.0e-59 231.9 366 46.2
Oeu006178.3 Olea europaea HOM05D005535 ORTHO05D006753 1.0e-58 231.5 363 45.2
Oeu022201.1 Olea europaea HOM05D005535 ORTHO05D006753 1.0e-58 231.5 338 47.0
FvH4_5g15300 Fragaria vesca HOM05D005535 ORTHO05D006753 1.4e-58 231.1 371 47.2
SalBow5G0107 Salvia bowleyana HOM05D005535 ORTHO05D006753 1.4e-58 231.1 354 47.2
Solyc03g113090.3 Solanum lycopersicum HOM05D005535 ORTHO05D006753 1.4e-58 231.1 233 57.5
MBI01_g12912_MAGBIO Magnolia biondii HOM05D005535 ORTHO05D006753 2.3e-58 230.3 241 55.6
PGSC0003DMG401018143 Solanum tuberosum HOM05D005535 ORTHO05D006753 6.8e-58 228.8 360 45.3
Solyc06g070970.3 Solanum lycopersicum HOM05D005535 ORTHO05D006753 8.8e-58 228.4 379 46.2
SGA_v2.0_scaffold56G20044 Striga asiatica HOM05D005535 ORTHO05D006753 8.8e-58 228.4 256 56.2
EL10Ac5g10956 Beta vulgaris HOM05D005535 ORTHO05D006753 2.0e-57 227.3 362 44.8
Ah.02g113290 Amaranthus hybridus HOM05D005535 ORTHO05D006753 3.4e-57 226.5 246 56.1
FAN13G1299 Fragaria x ananassa HOM05D005535 ORTHO05D006753 3.4e-57 226.5 373 46.9
FAN08G2745 Fragaria x ananassa HOM05D005535 ORTHO05D006753 5.7e-57 225.7 369 46.1
FAN18G1286 Fragaria x ananassa HOM05D005535 ORTHO05D006753 7.5e-57 225.3 373 46.4
Sopen06g027240 Solanum pennellii HOM05D005535 ORTHO05D006753 7.5e-57 225.3 378 45.2
MD06G1189400 Malus domestica HOM05D005535 ORTHO05D006753 1.1e-55 221.5 258 55.4
CAN.G628.33 Capsicum annuum HOM05D005535 ORTHO05D006753 1.8e-55 220.7 339 44.2
Lj5A114T27 Lonicera japonica HOM05D005535 ORTHO05D006753 2.4e-55 220.3 310 49.0
Sopen03g032160 Solanum pennellii HOM05D005535 ORTHO05D006753 2.4e-55 220.3 350 44.9
AUR62008371 Chenopodium quinoa HOM05D005535 ORTHO05D006753 3.1e-55 219.9 366 44.3
Cpa.g.sc17.224 Carica papaya HOM05D005535 ORTHO05D006753 5.4e-55 219.2 340 45.6
Sed0000211 Sechium edule HOM05D005535 ORTHO05D006753 2.0e-54 217.2 350 46.0
MD14G1196400 Malus domestica HOM05D005535 ORTHO05D006753 2.3e-53 213.8 366 45.9
FAN04G1197 Fragaria x ananassa HOM05D005535 ORTHO05D006753 2.9e-53 213.4 372 45.4
ECA232G4425 Erigeron canadensis HOM05D005535 ORTHO05D006753 2.5e-52 210.3 365 42.7
Sc10g0009960 Simmondsia chinensis HOM05D005535 ORTHO05D006753 1.6e-51 207.6 363 42.1
Peaxi162Scf00013g00129 Petunia axillaris HOM05D005535 ORTHO05D006753 1.0e-50 204.9 325 48.6
Potri.015G063700 Populus trichocarpa HOM05D005535 ORTHO05D006753 4.0e-50 203.0 253 54.2
PSO478G1818 Papaver somniferum HOM05D005535 ORTHO05D006753 2.0e-49 200.7 250 48.0
PSO591G0334 Papaver somniferum HOM05D005535 ORTHO05D006753 2.6e-49 200.3 257 52.1
PSO832G1146 Papaver somniferum HOM05D005535 ORTHO05D006753 2.6e-49 200.3 257 51.4
Aqoxy3G03311 Aquilegia oxysepala HOM05D005535 ORTHO05D006753 2.2e-48 197.2 260 50.4
PSO017G0680 Papaver somniferum HOM05D005535 ORTHO05D006753 2.2e-48 197.2 272 45.2
HanXRQChr09g0271071 Helianthus annuus HOM05D005535 ORTHO05D006753 3.2e-47 193.4 364 42.0
SGA_v2.0_scaffold162G37926 Striga asiatica HOM05D005535 ORTHO05D006753 7.0e-47 192.2 323 46.7
THA.LOC104821430 Tarenaya hassleriana HOM05D005535 ORTHO05D006753 4.6e-46 189.5 259 45.2
Sabra15G0089300 Salix brachista HOM05D005535 ORTHO05D006753 5.9e-46 189.1 332 45.2
ATR1120G167 Amborella trichopoda HOM05D005535 ORTHO05D006753 1.3e-45 188.0 365 40.3
HanXRQChr05g0158021 Helianthus annuus HOM05D005535 ORTHO05D006753 2.3e-45 187.2 221 52.9
Aa31LG11G1090 Aethionema arabicum HOM05D005535 ORTHO05D006753 3.6e-43 179.9 257 47.5
Lsat_1_v5_gn_5_19040 Lactuca sativa HOM05D005535 ORTHO05D006753 2.0e-41 174.1 234 48.7
Sp2g25720 Schrenkiella parvula HOM05D005535 ORTHO05D006753 2.6e-41 173.7 263 45.2
Thhalv10004313m.g Eutrema salsugineum HOM05D005535 ORTHO05D006753 1.3e-40 171.4 263 44.1
PGSC0003DMG400033073 Solanum tuberosum HOM05D005535 ORTHO05D006753 4.9e-40 169.5 376 38.6
A06p29250 Brassica napus HOM05D005535 ORTHO05D006753 1.9e-39 167.5 265 43.8
BraA06t25881Z Brassica rapa HOM05D005535 ORTHO05D006753 7.0e-39 165.6 265 43.8
unitig_26.g9639 Utricularia gibba HOM05D005535 ORTHO05D006753 7.0e-39 165.6 319 39.2
HPP92_024074 Vanilla planifolia HOM05D005535 ORTHO05D006753 1.6e-38 164.5 258 45.3
Os06g0589500 Oryza sativa ssp. japonica HOM05D005535 ORTHO05D006753 1.7e-37 161.0 252 42.1
AT5G62550 Arabidopsis thaliana HOM05D005535 ORTHO05D006753 3.0e-37 160.2 268 43.3
Zm00001eb386190 Zea mays HOM05D005535 ORTHO05D006753 6.6e-37 159.1 250 42.0
AL8G39440 Arabidopsis lyrata HOM05D005535 ORTHO05D006753 1.1e-36 158.3 268 42.9
BcaB02g09657 Brassica carinata HOM05D005535 ORTHO05D006753 1.5e-36 157.9 263 43.0
BcaC01g02485 Brassica carinata HOM05D005535 ORTHO05D006753 2.5e-36 157.1 265 43.0
C03p64280 Brassica napus HOM05D005535 ORTHO05D006753 2.5e-36 157.1 265 43.0
BolC3t18683H Brassica oleracea HOM05D005535 ORTHO05D006753 2.5e-36 157.1 265 43.0
Zm00001eb277070 Zea mays HOM05D005535 ORTHO05D006753 3.3e-36 156.8 251 43.0
Carub.0008s2322 Capsella rubella HOM05D005535 ORTHO05D006753 9.5e-36 155.2 263 44.1
TWI34G0031 Tripterygium wilfordii HOM05D005535 ORTHO05D006753 8.1e-27 125.6 186 48.9
SEGI_01090 Sequoiadendron giganteum HOM05D005535 ORTHO05D006753 7.6e-25 119.0 232 39.2
Nitab4.5_0000650g0050 Nicotiana tabacum HOM05D008415 ORTHO05D010601 2.8e-11 73.9 135 36.3
GSVIVG01025161001 Vitis vinifera HOM05D008415 ORTHO05D010601 3.1e-10 70.5 209 27.8
Actinidia03741 Actinidia chinensis HOM05D008415 ORTHO05D010601 5.3e-10 69.7 139 34.5
Lj3g0013437 Lotus japonicus HOM05D008415 ORTHO05D010601 5.3e-10 69.7 97 39.2
Migut.D02196 Erythranthe guttata HOM05D008415 ORTHO05D010601 6.9e-10 69.3 221 29.9
PGSC0003DMG400008064 Solanum tuberosum HOM05D008415 ORTHO05D010601 1.5e-09 68.2 246 28.9
Peaxi162Scf00351g00214 Petunia axillaris HOM05D008415 ORTHO05D010601 2.6e-09 67.4 206 29.6
Solyc11g069210.2 Solanum lycopersicum HOM05D008415 ORTHO05D010601 2.6e-09 67.4 181 29.8
Sopen11g027940 Solanum pennellii HOM05D008415 ORTHO05D010601 3.4e-09 67.0 209 31.6
SalBow3G0300 Salvia bowleyana HOM05D008415 ORTHO05D010601 4.5e-09 66.6 180 33.3
Eucgr.J00943 Eucalyptus grandis HOM05D008415 ORTHO05D010601 7.6e-09 65.9 88 38.6
SGA_v2.0_scaffold61G21159 Striga asiatica HOM05D008415 ORTHO05D010601 7.6e-09 65.9 158 31.0
VMungo1127G1728 Vigna mungo HOM05D008415 ORTHO05D010601 1.7e-08 64.7 141 31.9
CAN.G631.8 Capsicum annuum HOM05D008415 ORTHO05D010601 2.2e-08 64.3 231 25.1
CANSAT54G1687 Cannabis sativa HOM05D008415 ORTHO05D010601 4.9e-08 63.2 233 30.5
Dinv32770 Davidia involucrata HOM05D008415 ORTHO05D010601 6.4e-08 62.8 76 46.1
Phvul.011G073700 Phaseolus vulgaris HOM05D008415 ORTHO05D010601 6.4e-08 62.8 62 45.2
Rhsim01G0218700 Rhododendron simsii HOM05D008415 ORTHO05D010601 6.4e-08 62.8 105 39.0
MSTRG.18650 Avicennia marina HOM05D008415 ORTHO05D010601 8.4e-08 62.4 192 28.6
MELO3C025762.2 Cucumis melo HOM05D008415 ORTHO05D010601 8.4e-08 62.4 111 35.1
QL01p023166 Quercus lobata HOM05D008415 ORTHO05D010601 8.4e-08 62.4 119 35.3
CsaV3_6G021730 Cucumis sativus L. HOM05D008415 ORTHO05D010601 1.1e-07 62.0 111 35.1
MD01G1041800 Malus domestica HOM05D005535 ORTHO05D006753 1.1e-07 62.0 36 83.3
Medtr4g060050 Medicago truncatula HOM05D008415 ORTHO05D010601 1.1e-07 62.0 81 40.7
Glyma.12G070700 Glycine max HOM05D008415 ORTHO05D010601 1.9e-07 61.2 113 32.7
Hma1.2p1_1931F.1_g307990 Hydrangea macrophylla HOM05D008415 ORTHO05D010601 1.9e-07 61.2 170 27.6
Hma1.2p1_2585F.1_g324920 Hydrangea macrophylla HOM05D008415 ORTHO05D010601 1.9e-07 61.2 170 27.6
unitig_46.g18232 Utricularia gibba HOM05D008415 ORTHO05D010601 1.9e-07 61.2 114 33.3
Oeu059099.1 Olea europaea HOM05D008415 ORTHO05D010601 2.4e-07 60.8 249 26.1
Lalb_Chr19g0137361 Lupinus albus HOM05D008415 ORTHO05D010601 3.2e-07 60.5 74 39.2
Psat7g223880 Pisum sativum HOM05D008415 ORTHO05D010601 3.2e-07 60.5 126 31.0
PGR119G0199 Punica granatum HOM05D008415 ORTHO05D010601 3.2e-07 60.5 121 34.7
Sed0001336 Sechium edule HOM05D008415 ORTHO05D010601 5.4e-07 59.7 203 28.6
Ca_19250_v3 Cicer arietinum L. HOM05D008415 ORTHO05D010601 7.1e-07 59.3 58 44.8
arahy.Tifrunner.gnm1.ann1.TY33PY Arachis hypogaea HOM05D008415 ORTHO05D010601 9.3e-07 58.9 189 28.0
CSS0041118 Camellia sinensis var. sinensis HOM05D008415 ORTHO05D010601 1.2e-06 58.5 59 44.1
Glyma.11G154841 Glycine max HOM05D008415 ORTHO05D010601 1.6e-06 58.2 118 30.5
arahy.Tifrunner.gnm1.ann1.C7LIDW Arachis hypogaea HOM05D008415 ORTHO05D010601 2.7e-06 57.4 178 28.7
Cc01_g11390 Coffea canephora HOM05D008415 ORTHO05D010601 3.5e-06 57.0 213 26.8
vmacro14451 Vaccinium macrocarpon HOM05D008415 ORTHO05D010601 4.6e-06 56.6 210 26.7
Lsat_1_v5_gn_2_98161 Lactuca sativa HOM05D008415 ORTHO05D010601 7.9e-06 55.8 183 30.6
TAR633G1891 Trochodendron aralioides HOM05D008415 ORTHO05D010601 7.9e-06 55.8 255 26.7


User provided reference genes

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