Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_21785_v3 Cicer arietinum L. HOM05D005448 ORTHO05D006405 4.1e-108 394.8 210 100.0
TPR.G2023 Trifolium pratense HOM05D005448 ORTHO05D006405 3.4e-86 322.0 202 85.1
Psat4g047920 Pisum sativum HOM05D005448 ORTHO05D006405 3.3e-81 305.4 195 83.1
Medtr4g109400 Medicago truncatula HOM05D005448 ORTHO05D006405 2.1e-80 302.8 195 83.6
Glyma.05G022400 Glycine max HOM05D005448 ORTHO05D006405 4.1e-76 288.5 204 74.0
Lj4g0022538 Lotus japonicus HOM05D005448 ORTHO05D006405 4.9e-69 265.0 195 73.8
Phvul.003G185700 Phaseolus vulgaris HOM05D005448 ORTHO05D006405 2.7e-67 259.2 195 69.7
Lalb_Chr07g0178271 Lupinus albus HOM05D005448 ORTHO05D006405 6.2e-64 248.1 175 73.1
Eucgr.F03643 Eucalyptus grandis HOM05D005448 ORTHO05D006405 2.1e-56 223.0 190 61.6
Haze_07701 Corylus avellana HOM05D005448 ORTHO05D006405 3.6e-56 222.2 203 59.6
Dinv10698 Davidia involucrata HOM05D005448 ORTHO05D006405 3.6e-56 222.2 170 68.2
Atru.chr12.1057 Acer truncatum HOM05D005448 ORTHO05D006405 8.1e-56 221.1 189 64.0
Actinidia38176 Actinidia chinensis HOM05D005448 ORTHO05D006405 8.1e-56 221.1 208 61.5
Cpa.g.sc94.25 Carica papaya HOM05D005448 ORTHO05D006405 1.1e-55 220.7 199 59.8
Manes.06G086000 Manihot esculenta HOM05D005448 ORTHO05D006405 5.3e-55 218.4 190 62.1
QL10p019149 Quercus lobata HOM05D005448 ORTHO05D006405 2.0e-54 216.5 203 61.6
Ciclev10020839m.g Citrus clementina HOM05D005448 ORTHO05D006405 2.6e-54 216.1 191 60.2
PGR044G0604 Punica granatum HOM05D005448 ORTHO05D006405 4.9e-53 211.8 204 58.8
CiPaw.11G051600 Carya illinoinensis HOM05D005448 ORTHO05D006405 8.4e-53 211.1 203 58.1
Duzib205G1002 Durio zibethinus HOM05D005448 ORTHO05D006405 8.4e-53 211.1 177 63.3
MD17G1029400 Malus domestica HOM05D005448 ORTHO05D006405 2.4e-52 209.5 175 64.0
GSVIVG01007888001 Vitis vinifera HOM05D005448 ORTHO05D006405 2.4e-52 209.5 197 60.4
GSVIVG01007889001 Vitis vinifera HOM05D005448 ORTHO05D006405 5.4e-52 208.4 197 59.9
RcHm_v2.0_Chr7g0182771 Rosa chinensis HOM05D005448 ORTHO05D006405 1.2e-51 207.2 196 60.7
arahy.Tifrunner.gnm1.ann1.6AQ98N Arachis hypogaea HOM05D005448 ORTHO05D006405 1.6e-51 206.8 180 60.6
Potri.018G051500 Populus trichocarpa HOM05D005448 ORTHO05D006405 2.7e-51 206.1 191 59.7
Sabra18G0047800 Salix brachista HOM05D005448 ORTHO05D006405 6.0e-51 204.9 191 58.6
Sc25g0001780 Simmondsia chinensis HOM05D005448 ORTHO05D006405 6.0e-51 204.9 206 57.8
HanXRQChr05g0157251 Helianthus annuus HOM05D005448 ORTHO05D006405 7.8e-51 204.5 196 57.1
Gohir.A11G033100 Gossypium hirsutum HOM05D005448 ORTHO05D006405 1.0e-50 204.1 191 58.6
arahy.Tifrunner.gnm1.ann1.VF11UZ Arachis hypogaea HOM05D005448 ORTHO05D006405 1.7e-50 203.4 180 60.6
Gohir.D11G036400 Gossypium hirsutum HOM05D005448 ORTHO05D006405 3.0e-50 202.6 195 57.4
Gorai.007G039200 Gossypium raimondii HOM05D005448 ORTHO05D006405 3.0e-50 202.6 195 57.4
Oeu001027.1 Olea europaea HOM05D005448 ORTHO05D006405 5.1e-50 201.8 186 60.8
ECA246G3555 Erigeron canadensis HOM05D005448 ORTHO05D006405 8.7e-50 201.1 170 61.2
Nitab4.5_0001688g0100 Nicotiana tabacum HOM05D005448 ORTHO05D006405 8.7e-50 201.1 196 59.2
Prupe.7G041400 Prunus persica HOM05D005448 ORTHO05D006405 8.7e-50 201.1 176 60.2
CANSAT11G2386 Cannabis sativa HOM05D005448 ORTHO05D006405 1.5e-49 200.3 192 57.8
MSTRG.11359 Avicennia marina HOM05D005448 ORTHO05D006405 1.9e-49 199.9 194 56.7
Lj5A104G41 Lonicera japonica HOM05D005448 ORTHO05D006405 3.3e-49 199.1 201 56.7
Migut.E01012 Erythranthe guttata HOM05D005448 ORTHO05D006405 5.6e-49 198.4 174 59.8
SHI27027 Sapria himalayana HOM05D005448 ORTHO05D006405 5.6e-49 198.4 190 55.8
CsaV3_6G039380 Cucumis sativus L. HOM05D005448 ORTHO05D006405 1.3e-48 197.2 195 55.9
Hund02597 Selenicereus undatus HOM05D005448 ORTHO05D006405 1.3e-48 197.2 201 57.7
TWI53G0232 Tripterygium wilfordii HOM05D005448 ORTHO05D006405 2.1e-48 196.4 170 58.8
MELO3C014255.2 Cucumis melo HOM05D005448 ORTHO05D006405 8.1e-48 194.5 195 55.4
PSO541G3212 Papaver somniferum HOM05D005448 ORTHO05D006405 8.1e-48 194.5 202 54.5
RcHm_v2.0_Chr4g0399581 Rosa chinensis HOM05D005448 ORTHO05D006405 3.1e-47 192.6 196 58.2
MD14G1210300 Malus domestica HOM05D005448 ORTHO05D006405 6.9e-47 191.4 192 57.3
FvH4_5g14050 Fragaria vesca HOM05D005448 ORTHO05D006405 9.0e-47 191.0 192 56.8
CANSAT01G1259 Cannabis sativa HOM05D005448 ORTHO05D006405 2.0e-46 189.9 181 56.9
FAN08G1797 Fragaria x ananassa HOM05D005448 ORTHO05D006405 2.0e-46 189.9 192 56.2
Thecc.03G099500 Theobroma cacao HOM05D005448 ORTHO05D006405 2.0e-46 189.9 192 57.3
FAN13G0193 Fragaria x ananassa HOM05D005448 ORTHO05D006405 9.9e-46 187.6 192 56.2
SGA_v2.0_scaffold313G48306 Striga asiatica HOM05D005448 ORTHO05D006405 9.9e-46 187.6 187 55.6
FAN18G0267 Fragaria x ananassa HOM05D005448 ORTHO05D006405 2.9e-45 186.0 192 55.7
Nn3g17421 Nelumbo nucifera HOM05D005448 ORTHO05D006405 3.8e-45 185.7 205 52.2
Aqoxy3G03610 Aquilegia oxysepala HOM05D005448 ORTHO05D006405 4.9e-45 185.3 167 61.1
Cc04_g16850 Coffea canephora HOM05D005448 ORTHO05D006405 4.9e-45 185.3 209 52.2
Solyc06g069510.3 Solanum lycopersicum HOM05D005448 ORTHO05D006405 4.9e-45 185.3 198 55.6
CAN.G587.40 Capsicum annuum HOM05D005448 ORTHO05D006405 6.4e-45 184.9 205 52.7
Cc04_g13190 Coffea canephora HOM05D005448 ORTHO05D006405 8.4e-45 184.5 209 52.2
Nitab4.5_0000361g0060 Nicotiana tabacum HOM05D005448 ORTHO05D006405 1.4e-44 183.7 210 52.4
PGSC0003DMG400033055 Solanum tuberosum HOM05D005448 ORTHO05D006405 1.9e-44 183.3 198 54.5
AUR62008511 Chenopodium quinoa HOM05D005448 ORTHO05D006405 2.4e-44 183.0 191 55.5
TAR636G2978 Trochodendron aralioides HOM05D005448 ORTHO05D006405 7.1e-44 181.4 202 55.9
Rhsim12G0151600 Rhododendron simsii HOM05D005448 ORTHO05D006405 1.2e-43 180.6 170 60.6
MBI17_g24520_MAGBIO Magnolia biondii HOM05D005448 ORTHO05D006405 1.6e-43 180.3 202 52.0
Sopen06g026800 Solanum pennellii HOM05D005448 ORTHO05D006405 4.6e-43 178.7 198 54.5
TWI73G0142 Tripterygium wilfordii HOM05D005448 ORTHO05D006405 4.6e-43 178.7 201 49.3
Aa31LG3G18560 Aethionema arabicum HOM05D005448 ORTHO05D006405 6.0e-43 178.3 171 56.1
BraA10t44915Z Brassica rapa HOM05D001913 ORTHO05D006405 7.9e-43 177.9 176 55.1
CARHR205240 Cardamine hirsuta HOM05D005448 ORTHO05D006405 1.0e-42 177.6 194 53.1
TAR371G1280 Trochodendron aralioides HOM05D005448 ORTHO05D006405 8.7e-42 174.5 193 52.8
AT5G07950 Arabidopsis thaliana HOM05D005448 ORTHO05D006405 1.5e-41 173.7 194 54.1
Sp6g34990 Schrenkiella parvula HOM05D005448 ORTHO05D006405 1.5e-41 173.7 171 56.7
C09p68980 Brassica napus HOM05D006409 ORTHO05D006405 1.9e-41 173.3 176 54.0
THA.LOC104801284 Tarenaya hassleriana HOM05D005448 ORTHO05D006405 1.9e-41 173.3 177 54.2
CSS0038496 Camellia sinensis var. sinensis HOM05D005448 ORTHO05D006405 4.3e-41 172.2 206 52.4
vmacro16506 Vaccinium macrocarpon HOM05D005448 ORTHO05D006405 4.3e-41 172.2 260 46.2
AL6G18290 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 2.8e-40 169.5 179 54.2
PSO675G8542 Papaver somniferum HOM05D005448 ORTHO05D006405 2.8e-40 169.5 199 52.3
A10p28660 Brassica napus HOM05D006409 ORTHO05D008250 3.7e-40 169.1 185 53.0
Sed0024402 Sechium edule HOM05D005448 ORTHO05D006405 4.8e-40 168.7 175 53.1
BcaC06g32511 Brassica carinata HOM05D001913 ORTHO05D008250 8.1e-40 167.9 175 52.6
BcaB05g21593 Brassica carinata HOM05D005448 ORTHO05D006405 1.8e-39 166.8 190 50.5
Carub.0006s0685 Capsella rubella HOM05D005448 ORTHO05D006405 9.0e-39 164.5 202 49.0
Thhalv10014193m.g Eutrema salsugineum HOM05D005448 ORTHO05D006405 1.2e-38 164.1 168 53.6
BraA02t04938Z Brassica rapa HOM05D005448 ORTHO05D006405 2.0e-38 163.3 168 52.4
C02p03370 Brassica napus HOM05D005448 ORTHO05D006405 4.5e-38 162.2 168 52.4
BolC2t06299H Brassica oleracea HOM05D005448 ORTHO05D006405 4.5e-38 162.2 168 52.4
Os03g0213200 Oryza sativa ssp. japonica HOM05D005448 ORTHO05D006405 7.6e-38 161.4 191 47.1
ATR0064G115 Amborella trichopoda HOM05D005448 ORTHO05D006405 1.7e-37 160.2 191 48.7
Dinv17396 Davidia involucrata HOM05D005448 ORTHO05D006405 1.1e-36 157.5 119 68.1
ClCG04G008840 Citrullus lanatus HOM05D005448 ORTHO05D006405 4.2e-36 155.6 195 49.2
Zm00001eb400320 Zea mays HOM05D005448 ORTHO05D006405 1.2e-35 154.1 195 47.2
Peaxi162Scf00013g00627 Petunia axillaris HOM05D005448 ORTHO05D006405 2.1e-35 153.3 202 47.0
BcaC03g13203 Brassica carinata HOM05D005448 ORTHO05D006405 3.9e-34 149.1 190 45.8
AUR62021579 Chenopodium quinoa HOM05D005448 ORTHO05D006405 5.1e-34 148.7 208 47.1
Zm00001eb400290 Zea mays HOM05D005448 ORTHO05D006405 6.7e-34 148.3 170 48.8
VMungo1215G1798 Vigna mungo HOM05D005448 ORTHO05D006405 1.9e-33 146.7 103 75.7
DCAR_011598 Daucus carota HOM05D005448 ORTHO05D006405 3.3e-33 146.0 154 52.6
Ah.02g113960 Amaranthus hybridus HOM05D005448 ORTHO05D006405 5.3e-31 138.7 214 42.5
VMungo1215G2784 Vigna mungo HOM05D005448 ORTHO05D006405 5.5e-28 128.6 79 77.2
unitig_22.g5417 Utricularia gibba HOM05D005448 ORTHO05D006405 6.1e-27 125.2 215 40.9
DCAR_024881 Daucus carota HOM05D005448 ORTHO05D006405 3.9e-26 122.5 114 56.1
Mapoly0011s0155 Marchantia polymorpha HOM05D005448 ORTHO05D006405 4.3e-25 119.0 166 42.8
SEGI_17550 Sequoiadendron giganteum HOM05D005448 ORTHO05D006405 2.8e-24 116.3 161 42.2
AL3G46610 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 5.3e-23 112.1 123 51.2
SMO356G0523 Selaginella moellendorffii HOM05D005448 ORTHO05D006405 1.5e-22 110.5 166 39.2
HPP92_004716 Vanilla planifolia HOM05D005448 ORTHO05D006405 2.2e-21 106.7 119 47.9
Lsat_1_v5_gn_5_23221 Lactuca sativa HOM05D005448 ORTHO05D006405 1.1e-20 104.4 137 43.1
BolC4t27763H Brassica oleracea HOM05D005448 ORTHO05D006405 1.0e-18 97.8 192 37.5
BcaC02g07836 Brassica carinata HOM05D005448 ORTHO05D006405 3.0e-18 96.3 189 38.1
AL1G28800 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 5.1e-18 95.5 102 53.9
Prupe.1G213800 Prunus persica HOM05D005448 ORTHO05D006405 2.5e-17 93.2 93 53.8
C04p62800 Brassica napus HOM05D005448 ORTHO05D006405 4.3e-17 92.4 170 35.9
AL3G43910 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 1.3e-16 90.9 120 47.5
GSVIVG01007746001 Vitis vinifera HOM05D005448 ORTHO05D006405 7.7e-14 81.6 62 66.1
Pp3c17_6410 Physcomitrium patens HOM05D005448 ORTHO05D006405 5.5e-12 75.5 115 40.9
CBR_g39231 Chara braunii HOM05D005448 ORTHO05D006405 9.4e-12 74.7 171 33.9
SEGI_09353 Sequoiadendron giganteum HOM05D005448 ORTHO05D006405 9.4e-12 74.7 94 45.7
AL1G43330 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 1.2e-11 74.3 88 50.0
AL4G20140 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 1.2e-11 74.3 88 50.0
AL3G19900 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 7.9e-11 71.6 61 60.7
AL7G18100 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 7.9e-11 71.6 61 60.7
VMungo0464G0610 Vigna mungo HOM05D005448 ORTHO05D006405 1.0e-10 71.2 43 76.7
FvH4_5g14150 Fragaria vesca HOM05D005448 ORTHO05D006405 3.9e-10 69.3 65 55.4
VMungo0647G2219 Vigna mungo HOM05D005448 ORTHO05D006405 5.7e-09 65.5 169 30.8
A04p25650 Brassica napus HOM05D005448 ORTHO05D006405 1.3e-08 64.3 71 46.5
BraA04t18069Z Brassica rapa HOM05D005448 ORTHO05D006405 1.3e-08 64.3 71 46.5
BolC9t59642H Brassica oleracea HOM05D005448 ORTHO05D006405 2.2e-08 63.5 65 49.2


User provided reference genes

Program Settings