Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_21726_v3 Cicer arietinum L. HOM05D004479 ORTHO05D005597 8.9e-261 903.3 527 100.0
Medtr5g013930 Medicago truncatula HOM05D004479 ORTHO05D005597 2.5e-215 752.3 545 84.2
TPR.G5557 Trifolium pratense HOM05D004479 ORTHO05D005597 2.1e-214 749.2 537 85.5
arahy.Tifrunner.gnm1.ann1.HYUF3S Arachis hypogaea HOM05D004479 ORTHO05D005597 1.3e-198 696.8 523 81.1
arahy.Tifrunner.gnm1.ann1.SFLF9H Arachis hypogaea HOM05D004479 ORTHO05D005597 1.3e-198 696.8 523 81.1
Glyma.12G188300 Glycine max HOM05D004479 ORTHO05D005597 3.3e-191 672.2 530 74.9
VMungo1080G0276 Vigna mungo HOM05D004479 ORTHO05D005597 6.5e-187 657.9 530 77.7
Ciclev10025265m.g Citrus clementina HOM05D004479 ORTHO05D005597 2.2e-182 642.9 545 72.7
Phvul.005G185100 Phaseolus vulgaris HOM05D004479 ORTHO05D005597 3.2e-178 629.0 527 73.6
Ca_04816_v3 Cicer arietinum L. HOM05D004479 ORTHO05D005597 2.7e-177 625.9 529 77.3
Prupe.1G049400 Prunus persica HOM05D004479 ORTHO05D005597 2.0e-175 619.8 544 71.5
CsaV3_3G030520 Cucumis sativus L. HOM05D004479 ORTHO05D005597 3.7e-174 615.5 531 68.5
Gohir.A01G221776 Gossypium hirsutum HOM05D004479 ORTHO05D005597 3.7e-174 615.5 548 71.0
Dinv09182 Davidia involucrata HOM05D004479 ORTHO05D005597 8.3e-174 614.4 540 72.0
Gorai.010G142700 Gossypium raimondii HOM05D004479 ORTHO05D005597 7.7e-172 607.8 548 70.8
RcHm_v2.0_Chr4g0395701 Rosa chinensis HOM05D004479 ORTHO05D005597 2.2e-171 606.3 541 71.0
MELO3C026710.2 Cucumis melo HOM05D004479 ORTHO05D005597 5.0e-171 605.1 526 69.4
QL05p084035 Quercus lobata HOM05D004479 ORTHO05D005597 1.1e-170 604.0 562 68.1
MD16G1227300 Malus domestica HOM05D004479 ORTHO05D005597 7.2e-170 601.3 545 67.7
TAR626G0959 Trochodendron aralioides HOM05D004479 ORTHO05D005597 6.1e-169 598.2 567 67.7
Manes.06G177300 Manihot esculenta HOM05D004479 ORTHO05D005597 2.3e-168 596.3 541 71.2
Lj3g0018425 Lotus japonicus HOM05D004479 ORTHO05D005597 1.5e-167 593.6 533 73.9
Psat5g288040 Pisum sativum HOM05D004479 ORTHO05D005597 1.1e-165 587.4 435 83.9
Potri.010G253100 Populus trichocarpa HOM05D004479 ORTHO05D005597 1.1e-165 587.4 554 65.3
CANSAT78G0411 Cannabis sativa HOM05D004479 ORTHO05D005597 4.5e-164 582.0 542 67.2
ClCG07G014640 Citrullus lanatus HOM05D004479 ORTHO05D005597 5.9e-164 581.6 533 66.8
Duzib192G0061 Durio zibethinus HOM05D004479 ORTHO05D005597 8.6e-163 577.8 522 69.0
Eucgr.J03177 Eucalyptus grandis HOM05D004479 ORTHO05D005597 1.5e-162 577.0 533 67.2
COL.COLO4_31168 Corchorus olitorius HOM05D004479 ORTHO05D005597 3.6e-161 572.4 520 70.4
Actinidia21882 Actinidia chinensis HOM05D004479 ORTHO05D005597 2.3e-160 569.7 546 65.2
FvH4_4g04880 Fragaria vesca HOM05D004479 ORTHO05D005597 4.0e-160 568.9 540 67.2
Thecc.06G058800 Theobroma cacao HOM05D004479 ORTHO05D005597 1.5e-159 567.0 537 67.8
Sed0022371 Sechium edule HOM05D004479 ORTHO05D005597 8.3e-158 561.2 524 67.6
Cc04_g00200 Coffea canephora HOM05D004479 ORTHO05D005597 1.8e-157 560.1 542 64.9
GSVIVG01029540001 Vitis vinifera HOM05D004479 ORTHO05D005597 2.7e-156 556.2 541 65.1
FAN17G0751 Fragaria x ananassa HOM05D004479 ORTHO05D005597 5.9e-156 555.1 553 62.2
Nitab4.5_0004918g0010 Nicotiana tabacum HOM05D004479 ORTHO05D005597 5.9e-156 555.1 539 66.2
Gohir.A06G118600 Gossypium hirsutum HOM05D004479 ORTHO05D005597 1.7e-155 553.5 550 66.9
Sabra10G0196900 Salix brachista HOM05D004479 ORTHO05D005597 2.3e-155 553.1 648 58.6
PGR119G2289 Punica granatum HOM05D004479 ORTHO05D005597 5.0e-155 552.0 537 67.0
Solyc03g123960.3 Solanum lycopersicum HOM05D004479 ORTHO05D005597 4.3e-154 548.9 543 64.6
Atru.chr1.2695 Acer truncatum HOM05D004479 ORTHO05D005597 3.1e-152 542.7 541 64.5
Nitab4.5_0002664g0040 Nicotiana tabacum HOM05D004479 ORTHO05D005597 2.6e-151 539.7 556 64.2
FAN22G0181 Fragaria x ananassa HOM05D004479 ORTHO05D005597 2.2e-150 536.6 498 65.7
Nn7g37005 Nelumbo nucifera HOM05D004479 ORTHO05D005597 6.4e-150 535.0 553 64.7
Glyma.13G372700 Glycine max HOM05D004479 ORTHO05D005597 1.4e-149 533.9 423 79.0
TWI09G1491 Tripterygium wilfordii HOM05D004479 ORTHO05D005597 7.0e-149 531.6 492 65.0
Sopen03g041690 Solanum pennellii HOM05D004479 ORTHO05D005597 1.2e-148 530.8 577 60.5
MSTRG.10879 Avicennia marina HOM05D004479 ORTHO05D005597 1.3e-147 527.3 547 62.0
CSS0019442 Camellia sinensis var. sinensis HOM05D004479 ORTHO05D005597 1.3e-147 527.3 543 63.5
RcHm_v2.0_Chr4g0395721 Rosa chinensis HOM05D004479 ORTHO05D005597 5.0e-147 525.4 487 69.8
Migut.I01194 Erythranthe guttata HOM05D004479 ORTHO05D005597 1.2e-145 520.8 546 63.0
EL10Ac7g18162 Beta vulgaris HOM05D004479 ORTHO05D005597 2.8e-145 519.6 501 63.3
CAN.G790.12 Capsicum annuum HOM05D004479 ORTHO05D005597 3.6e-145 519.2 529 63.9
Aqoxy7G02788 Aquilegia oxysepala HOM05D004479 ORTHO05D005597 8.3e-142 508.1 562 62.3
Cfa002151 Carpinus fangiana HOM05D004479 ORTHO05D005597 2.4e-141 506.5 484 68.0
HanXRQChr12g0359691 Helianthus annuus HOM05D004479 ORTHO05D005597 2.4e-141 506.5 538 60.6
THA.LOC104800314 Tarenaya hassleriana HOM05D004479 ORTHO05D005597 1.2e-140 504.2 557 59.1
Hma1.2p1_1111F.1_g258400 Hydrangea macrophylla HOM05D004479 ORTHO05D005597 4.6e-140 502.3 455 69.7
Ah.15g094320 Amaranthus hybridus HOM05D004479 ORTHO05D005597 5.1e-139 498.8 525 62.9
MBI13_g34036_MAGBIO Magnolia biondii HOM05D004479 ORTHO05D005597 7.3e-138 495.0 480 64.8
Oeu049641.1 Olea europaea HOM05D004479 ORTHO05D005597 3.1e-136 489.6 579 57.5
Sp2g14070 Schrenkiella parvula HOM05D004479 ORTHO05D005597 5.2e-136 488.8 535 60.2
PSO170G2367 Papaver somniferum HOM05D004479 ORTHO05D005597 2.6e-135 486.5 563 60.6
ECA234G3188 Erigeron canadensis HOM05D001810 ORTHO05D005662 1.7e-134 483.8 480 62.3
Peaxi162Scf00038g02656 Petunia axillaris HOM05D004479 ORTHO05D005597 4.1e-133 479.2 534 55.4
Hund18609 Selenicereus undatus HOM05D004479 ORTHO05D005597 1.2e-132 477.6 555 55.9
Lsat_1_v5_gn_5_137281 Lactuca sativa HOM05D004479 ORTHO05D005597 1.6e-132 477.2 493 64.5
Nitab4.5_0005664g0060 Nicotiana tabacum HOM05D004479 ORTHO05D005597 1.3e-131 474.2 516 55.6
vmacro18747 Vaccinium macrocarpon HOM05D004479 ORTHO05D005597 6.6e-131 471.9 577 52.9
Zm00001eb320420 Zea mays HOM05D004479 ORTHO05D005597 1.5e-130 470.7 526 53.0
PSO384G0383 Papaver somniferum HOM05D004479 ORTHO05D005597 3.6e-129 466.1 567 58.2
MBI13_g01743_MAGBIO Magnolia biondii HOM05D004479 ORTHO05D005597 4.7e-129 465.7 480 62.7
unitig_748.g8028 Utricularia gibba HOM05D004479 ORTHO05D005597 2.4e-128 463.4 568 52.3
PSO063G0217 Papaver somniferum HOM05D004479 ORTHO05D005597 4.4e-127 459.1 568 57.2
CARHR213680 Cardamine hirsuta HOM05D004479 ORTHO05D005597 2.9e-126 456.4 537 59.0
AUR62001343 Chenopodium quinoa HOM05D004479 ORTHO05D005597 1.1e-125 454.5 525 54.5
HPP92_008247 Vanilla planifolia HOM05D004479 ORTHO05D005597 1.1e-125 454.5 524 54.0
AT2G03070 Arabidopsis thaliana HOM05D004479 ORTHO05D005597 1.9e-125 453.8 534 57.1
Rhsim08G0249800 Rhododendron simsii HOM05D004479 ORTHO05D005597 2.4e-125 453.4 543 58.7
ATR0626G211 Amborella trichopoda HOM05D004479 ORTHO05D005597 1.6e-124 450.7 529 52.0
Aa31LG2G7330 Aethionema arabicum HOM05D004479 ORTHO05D005597 2.7e-124 449.9 512 54.3
Carub.0005s0192 Capsella rubella HOM05D004479 ORTHO05D005597 4.6e-124 449.1 529 59.5
Sc12g0011150 Simmondsia chinensis HOM05D004479 ORTHO05D005597 4.6e-124 449.1 535 57.0
Hund18598 Selenicereus undatus HOM05D004479 ORTHO05D005597 8.7e-123 444.9 461 59.7
Thhalv10004003m.g Eutrema salsugineum HOM05D004479 ORTHO05D005597 3.3e-122 443.0 516 60.1
SalBow6G0079 Salvia bowleyana HOM05D004479 ORTHO05D005597 3.4e-119 433.0 543 50.5
CDE02G4004 Ceratophyllum demersum HOM05D004479 ORTHO05D005597 3.2e-117 426.4 553 51.2
AL5G12650 Arabidopsis lyrata HOM05D004479 ORTHO05D005597 9.3e-117 424.9 522 58.4
BcaB07g30687 Brassica carinata HOM05D004479 ORTHO05D005597 1.1e-114 417.9 477 59.3
BcaC04g21507 Brassica carinata HOM05D004479 ORTHO05D005597 3.3e-114 416.4 524 55.0
C09p30960 Brassica napus HOM05D004479 ORTHO05D005597 2.8e-113 413.3 524 54.8
BolC9t55955H Brassica oleracea HOM05D004479 ORTHO05D005597 2.8e-113 413.3 524 54.8
BraA09t38008Z Brassica rapa HOM05D004479 ORTHO05D005597 2.8e-113 413.3 532 56.2
Gohir.D06G122500 Gossypium hirsutum HOM05D004479 ORTHO05D005597 6.2e-113 412.1 433 63.7
A09p24080 Brassica napus HOM05D004479 ORTHO05D005597 1.1e-112 411.4 529 56.0
AUR62025661 Chenopodium quinoa HOM05D004479 ORTHO05D005597 2.2e-110 403.7 479 52.8
Lj6C65T2 Lonicera japonica HOM05D004479 ORTHO05D005597 1.5e-106 391.0 368 67.7
DCAR_030619 Daucus carota HOM05D004479 ORTHO05D005597 3.1e-104 383.3 308 66.9
PGSC0003DMG400009164 Solanum tuberosum HOM05D004479 ORTHO05D005597 3.1e-104 383.3 295 69.2
SGA_v2.0_scaffold122G33268 Striga asiatica HOM05D004479 ORTHO05D005597 1.1e-101 374.8 424 57.1
Haze_16264 Corylus avellana HOM05D004479 ORTHO05D005597 4.2e-85 319.7 210 80.5
PSO836G0001 Papaver somniferum HOM05D004479 ORTHO05D005597 3.3e-82 310.1 477 52.0
Cpa.g.sc1515.2 Carica papaya HOM05D004479 ORTHO05D005597 3.1e-80 303.5 203 76.8
Dinv37783 Davidia involucrata HOM05D004479 ORTHO05D005597 2.2e-78 297.4 206 77.7
Os03g0423800 Oryza sativa ssp. japonica HOM05D004479 ORTHO05D005597 3.8e-78 296.6 232 65.5
Dinv37782 Davidia involucrata HOM05D004479 ORTHO05D005597 2.6e-74 283.9 352 62.8
BcaC06g31203 Brassica carinata HOM05D004479 ORTHO05D005597 1.5e-66 258.1 212 62.7
BraA06t27217Z Brassica rapa HOM05D004479 ORTHO05D005597 5.7e-66 256.1 229 59.8
BolC7t43874H Brassica oleracea HOM05D004479 ORTHO05D005597 6.3e-65 252.7 229 60.3
BcaC06g34021 Brassica carinata HOM05D004479 ORTHO05D005597 8.2e-65 252.3 229 60.3
Pp3c18_4030 Physcomitrium patens HOM05D004479 ORTHO05D005597 1.2e-63 248.4 303 46.9
A06p43310 Brassica napus HOM05D004479 ORTHO05D005597 1.4e-59 235.0 260 51.9
Psat1g118080 Pisum sativum HOM05D004479 ORTHO05D005597 7.5e-58 229.2 167 76.0
Mapoly0029s0023 Marchantia polymorpha HOM05D004479 ORTHO05D005597 3.6e-52 210.3 319 42.0
Oeu062492.1 Olea europaea HOM05D004479 ORTHO05D005597 3.0e-51 207.2 221 51.6
Psat0s1227g0080 Pisum sativum HOM05D000020 ORTHO05D015801 9.2e-48 195.7 136 77.2
C07p33640 Brassica napus HOM05D004479 ORTHO05D005597 5.9e-47 193.0 229 52.4
Aqoxy377s002 Aquilegia oxysepala HOM05D004479 ORTHO05D005597 1.1e-45 188.7 172 62.2
CiPaw.01G090700 Carya illinoinensis HOM05D004479 ORTHO05D005597 3.6e-44 183.7 205 62.4
AagrBONN_evm.TU.Sc2ySwM_117.2251 Anthoceros agrestis HOM05D004479 ORTHO05D005597 6.8e-43 179.5 238 41.2
SMO114G0145 Selaginella moellendorffii HOM05D004479 ORTHO05D005597 7.5e-42 176.0 204 44.6
CBR_g41305 Chara braunii HOM05D004479 ORTHO05D005597 2.0e-39 167.9 206 46.1
AagrBONN_evm.TU.Sc2ySwM_117.1357 Anthoceros agrestis HOM05D004479 ORTHO05D005597 6.6e-38 162.9 205 42.9
Psat0s1762g0040 Pisum sativum HOM05D004479 ORTHO05D005597 6.4e-33 146.4 188 51.6
COL.COLO4_31578 Corchorus olitorius HOM05D001810 ORTHO05D005662 1.1e-32 145.6 181 52.5
CARHR145470 Cardamine hirsuta HOM05D004479 ORTHO05D005597 1.2e-31 142.1 106 68.9
SEGI_11469 Sequoiadendron giganteum HOM05D004479 ORTHO05D005597 3.5e-31 140.6 118 60.2
Psat7g008520 Pisum sativum HOM05D004479 ORTHO05D005597 2.0e-26 124.8 79 81.0
Cpa.g.sc155.18 Carica papaya HOM05D004479 ORTHO05D005597 1.7e-25 121.7 103 68.0
Psat0s2660g0040 Pisum sativum HOM05D000020 ORTHO05D015801 2.4e-24 117.9 76 78.9
Actinidia21652 Actinidia chinensis HOM05D004479 ORTHO05D005597 8.6e-22 109.4 66 75.8
Psat3g045760 Pisum sativum HOM05D004392 ORTHO05D004846 1.2e-20 105.5 69 76.8
FAN12G4029 Fragaria x ananassa HOM05D002474 ORTHO05D007142 2.1e-20 104.8 117 59.0
QL03p033126 Quercus lobata HOM05D004479 ORTHO05D005597 2.1e-20 104.8 69 73.9
SEGI_18721 Sequoiadendron giganteum HOM05D004479 ORTHO05D005597 2.0e-18 98.2 101 53.5
DCAR_030620 Daucus carota HOM05D004479 ORTHO05D005597 1.3e-17 95.5 101 62.4
SHI42840 Sapria himalayana HOM05D004479 ORTHO05D005597 5.4e-16 90.1 133 42.1
SHI24407 Sapria himalayana HOM05D004479 ORTHO05D005597 3.5e-15 87.4 173 40.5
QL05p046913 Quercus lobata HOM05D004479 ORTHO05D005597 7.8e-15 86.3 111 46.8
Psat0s1227g0040 Pisum sativum HOM05D000280 ORTHO05D015801 1.0e-14 85.9 52 80.8
SHI42601 Sapria himalayana HOM05D004479 ORTHO05D005597 3.0e-14 84.3 155 37.4
SHI31116 Sapria himalayana HOM05D004479 ORTHO05D005597 3.3e-13 80.9 46 84.8
Psat3g175600 Pisum sativum HOM05D004479 ORTHO05D005597 3.4e-10 70.9 47 80.9
BcaC04g22058 Brassica carinata HOM05D006908 ORTHO05D008662 2.2e-09 68.2 39 79.5
C09p24010 Brassica napus HOM05D002960 ORTHO05D042139 2.2e-09 68.2 39 79.5
BolC9t55321H Brassica oleracea HOM05D002960 ORTHO05D042139 2.2e-09 68.2 39 79.5
SHI31115 Sapria himalayana HOM05D004479 ORTHO05D005597 6.4e-09 66.6 44 70.5
Haze_16261 Corylus avellana HOM05D004479 ORTHO05D029161 8.4e-09 66.2 68 66.2
Haze_18674 Corylus avellana HOM05D004479 ORTHO05D005597 1.1e-08 65.9 40 77.5
SHI42976 Sapria himalayana HOM05D004479 ORTHO05D005597 1.1e-08 65.9 115 36.5
Peaxi162Scf00038g02640 Petunia axillaris HOM05D004479 ORTHO05D029161 5.4e-08 63.5 42 71.4
Nitab4.5_0005739g0060 Nicotiana tabacum HOM05D004479 ORTHO05D029161 9.3e-08 62.8 103 45.6
SHI50578 Sapria himalayana HOM05D004479 ORTHO05D005597 9.3e-08 62.8 245 27.3
SHI49595 Sapria himalayana HOM05D004479 ORTHO05D005597 2.1e-07 61.6 113 37.2
SHI36675 Sapria himalayana HOM05D004479 ORTHO05D005597 3.5e-07 60.8 54 59.3
Hma1.2p1_0370F.1_g138010 Hydrangea macrophylla HOM05D004479 ORTHO05D005597 6.0e-07 60.1 46 71.7
SHI34972 Sapria himalayana HOM05D004479 ORTHO05D005597 6.0e-07 60.1 107 36.4
SHI13126 Sapria himalayana HOM05D000105 ORTHO05D000023 1.3e-06 58.9 54 66.7
COL.COLO4_18371 Corchorus olitorius HOM05D004479 ORTHO05D005597 2.3e-06 58.2 54 53.7
BcaC02g11491 Brassica carinata HOM05D019637 ORTHO05D018695 3.0e-06 57.8 40 75.0
C04p14790 Brassica napus HOM05D004479 ORTHO05D018695 3.0e-06 57.8 40 75.0
BolC4t23053H Brassica oleracea HOM05D004479 ORTHO05D018695 3.0e-06 57.8 40 75.0
QL08p038027 Quercus lobata HOM05D004479 ORTHO05D337893 8.7e-06 56.2 196 28.1


User provided reference genes

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